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--- |
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language: |
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- protein sequences |
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datasets: |
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- Swissprot |
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tags: |
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- Protein |
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- Enzyme Commission |
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--- |
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# Dataset |
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Swissprot is a high quality manually annotated protein database. The dataset contains annotations with the functional properties of the proteins. Here we extract proteins with Enzyme Commission labels. |
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The dataset is ported from Protinfer: https://github.com/google-research/proteinfer. |
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The leaf level EC-labels are extracted and indexed, the mapping is provided in `idx_mapping.json`. Proteins without leaf-level-EC tags are removed. |
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## Example |
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The protein Q87BZ2 have the following EC tags. |
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EC:2.-.-.- (Transferases) |
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EC:2.7.-.- (Transferring phosphorus-containing groups) |
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EC:2.7.1.- (Phosphotransferases with an alcohol group as acceptor) |
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EC:2.7.1.30 (Glycerol kinase) |
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We only extract the leaf level labels, here EC:2.7.1.30, corresponding to glycerol kinase. |
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