DanielHesslow
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Create README.md
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README.md
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---
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language:
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- protein sequences
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datasets:
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- Swissprot
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tags:
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- Protein
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- Enzyme Commission
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---
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# Dataset
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Swissprot is a high quality manually annotated protein database. The dataset contains annotations with the functional properties of the proteins. Here we extract proteins with Enzyme Commission labels.
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The dataset is ported from Protinfer: https://github.com/google-research/proteinfer.
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The leaf level EC-labels are extracted and indexed, the mapping is provided in `idx_mapping.json`. Proteins without leaf-level-EC tags are removed.
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## Example
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The protein Q87BZ2 have the following EC tags.
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EC:2.-.-.- (Transferases)
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EC:2.7.-.- (Transferring phosphorus-containing groups)
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EC:2.7.1.- (Phosphotransferases with an alcohol group as acceptor)
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EC:2.7.1.30 (Glycerol kinase)
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We only extract the leaf level labels, here EC:2.7.1.30, corresponding to glycerol kinase.
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