Use of biomedical model to allign vocab

#2
by surrealarmada - opened

Is there a model that has been trained to convert in the biodemical literature the name of a generic drug to its commercial name. For example, sometimes the same molecule is referred to as 'pembrolizumab' or 'Keytruda'.

It's called entity normalization

This is very useful. Thanks Patrick. Can you kindly point me in the right direction a model that does this entity normalisation?

I don't do entity normalization. You can try prompting an LLM to suggest alternative names that it knows, but there's no guarantee on accuracy.
You can also check out this toolkit https://github.com/hpi-dhc/xmen

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