(Kidney) Papillary, Clear Cell and Chromophobe Renal Cell Carcinoma
This model can additionally be run on our pathology reports platform
Credits: Dr. Vincent Castillo & Dr. Rola Saleeb (University of Toronto, Canada)
Introduction
This H&E kidney renal cell carcinoma tissue classifier was developed using transfer learning on a histology optimized version of the VGG19 CNN (DOI: 10.1038/s42256-019-0068-6) and trained to recognize kidney clear, papillary, and chromophobe renal cell carcinoma and other surrounding tissue elements.
Annotations were carried out on batches of image tiles (dimensions: 512 x 512 px) grouped using image-based clustering (HAVOC, DOI: 10.1126/sciadv.adg1894) from 55 local H&E-stained whole slide images. Validation testing was carried out on non-overlapping image tiles from the same cases.
Classes
- Blood Vessel
- Chromophobe Renal Cell Carcinoma
- Clear Cell Renal Cell Carcinoma
- Cyst Fluid
- Fibrocollagenous Tissue
- Hemorrhage
- Hemosiderin
- Necrosis
- Papillary Renal Cell Carcinoma
- Renal Parenchyma
- Renal Pelvis
- Blank space
This information can be found in the inference.json file
Evaluation Metrics
Classifier validation can be found on the pathology reports platform
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