Convert dataset to Parquet (#3)

- Convert dataset to Parquet (e1fd07fec1b9190f481b820d4f1c838f4d3c3bc7)

README.md

@@ -1,20 +1,79 @@
-
 ---
-language: 
+language:
 - en
-bigbio_language: 
-- English
 license: other
 multilinguality: monolingual
-bigbio_license_shortname: PUBLIC_DOMAIN_MARK_1p0
 pretty_name: BC5CDR
+bigbio_language:
+- English
+bigbio_license_shortname: PUBLIC_DOMAIN_MARK_1p0
 homepage: http://www.biocreative.org/tasks/biocreative-v/track-3-cdr/
-bigbio_pubmed: True
-bigbio_public: True
-bigbio_tasks: 
+bigbio_pubmed: true
+bigbio_public: true
+bigbio_tasks:
 - NAMED_ENTITY_RECOGNITION
 - NAMED_ENTITY_DISAMBIGUATION
 - RELATION_EXTRACTION
+dataset_info:
+  config_name: bc5cdr_source
+  features:
+  - name: passages
+    list:
+    - name: document_id
+      dtype: string
+    - name: type
+      dtype: string
+    - name: text
+      dtype: string
+    - name: entities
+      list:
+      - name: id
+        dtype: string
+      - name: offsets
+        list:
+          list: int32
+      - name: text
+        list: string
+      - name: type
+        dtype: string
+      - name: normalized
+        list:
+        - name: db_name
+          dtype: string
+        - name: db_id
+          dtype: string
+    - name: relations
+      list:
+      - name: id
+        dtype: string
+      - name: type
+        dtype: string
+      - name: arg1_id
+        dtype: string
+      - name: arg2_id
+        dtype: string
+  splits:
+  - name: train
+    num_bytes: 1488733
+    num_examples: 500
+  - name: test
+    num_bytes: 1535335
+    num_examples: 500
+  - name: validation
+    num_bytes: 1492464
+    num_examples: 500
+  download_size: 1516417
+  dataset_size: 4516532
+configs:
+- config_name: bc5cdr_source
+  data_files:
+  - split: train
+    path: bc5cdr_source/train-*
+  - split: test
+    path: bc5cdr_source/test-*
+  - split: validation
+    path: bc5cdr_source/validation-*
+  default: true
 ---
 
 

bc5cdr_source/test-00000-of-00001.parquet

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e0968f2fb0399cb8b07d50d534dd75f2b124b5eb86e34e041c7c80cfdf0a5e0d
+size 515058

bc5cdr_source/train-00000-of-00001.parquet

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bd4932703b4eb9a1bc79e24e34c3a43812d7e9db7f6cb45434529c5624a9d286
+size 502664

bc5cdr_source/validation-00000-of-00001.parquet

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bfc38d25edcfa8376b6829b96a3528fc9e35c8a15f02c67de01f07c24036fe7d
+size 498695