|
--- |
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language: |
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- en |
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license: other |
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multilinguality: monolingual |
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pretty_name: BC5CDR |
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bigbio_language: |
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- English |
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bigbio_license_shortname: PUBLIC_DOMAIN_MARK_1p0 |
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homepage: http://www.biocreative.org/tasks/biocreative-v/track-3-cdr/ |
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bigbio_pubmed: true |
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bigbio_public: true |
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bigbio_tasks: |
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- NAMED_ENTITY_RECOGNITION |
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- NAMED_ENTITY_DISAMBIGUATION |
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- RELATION_EXTRACTION |
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dataset_info: |
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config_name: bc5cdr_source |
|
features: |
|
- name: passages |
|
list: |
|
- name: document_id |
|
dtype: string |
|
- name: type |
|
dtype: string |
|
- name: text |
|
dtype: string |
|
- name: entities |
|
list: |
|
- name: id |
|
dtype: string |
|
- name: offsets |
|
list: |
|
list: int32 |
|
- name: text |
|
list: string |
|
- name: type |
|
dtype: string |
|
- name: normalized |
|
list: |
|
- name: db_name |
|
dtype: string |
|
- name: db_id |
|
dtype: string |
|
- name: relations |
|
list: |
|
- name: id |
|
dtype: string |
|
- name: type |
|
dtype: string |
|
- name: arg1_id |
|
dtype: string |
|
- name: arg2_id |
|
dtype: string |
|
splits: |
|
- name: train |
|
num_bytes: 1488733 |
|
num_examples: 500 |
|
- name: test |
|
num_bytes: 1535335 |
|
num_examples: 500 |
|
- name: validation |
|
num_bytes: 1492464 |
|
num_examples: 500 |
|
download_size: 1516417 |
|
dataset_size: 4516532 |
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configs: |
|
- config_name: bc5cdr_source |
|
data_files: |
|
- split: train |
|
path: bc5cdr_source/train-* |
|
- split: test |
|
path: bc5cdr_source/test-* |
|
- split: validation |
|
path: bc5cdr_source/validation-* |
|
default: true |
|
--- |
|
|
|
|
|
# Dataset Card for BC5CDR |
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|
|
## Dataset Description |
|
|
|
- **Homepage:** http://www.biocreative.org/tasks/biocreative-v/track-3-cdr/ |
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- **Pubmed:** True |
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- **Public:** True |
|
- **Tasks:** NER,NED,RE |
|
|
|
|
|
The BioCreative V Chemical Disease Relation (CDR) dataset is a large annotated text corpus of human annotations of all chemicals, diseases and their interactions in 1,500 PubMed articles. |
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|
|
|
|
|
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## Citation Information |
|
|
|
``` |
|
@article{DBLP:journals/biodb/LiSJSWLDMWL16, |
|
author = {Jiao Li and |
|
Yueping Sun and |
|
Robin J. Johnson and |
|
Daniela Sciaky and |
|
Chih{-}Hsuan Wei and |
|
Robert Leaman and |
|
Allan Peter Davis and |
|
Carolyn J. Mattingly and |
|
Thomas C. Wiegers and |
|
Zhiyong Lu}, |
|
title = {BioCreative {V} {CDR} task corpus: a resource for chemical disease |
|
relation extraction}, |
|
journal = {Database J. Biol. Databases Curation}, |
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volume = {2016}, |
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year = {2016}, |
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url = {https://doi.org/10.1093/database/baw068}, |
|
doi = {10.1093/database/baw068}, |
|
timestamp = {Thu, 13 Aug 2020 12:41:41 +0200}, |
|
biburl = {https://dblp.org/rec/journals/biodb/LiSJSWLDMWL16.bib}, |
|
bibsource = {dblp computer science bibliography, https://dblp.org} |
|
} |
|
|
|
``` |
|
|
