ProdicusII/ZeroShotBioNER
Token Classification
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Updated
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Error code: ConfigNamesError Exception: ImportError Message: To be able to use bigbio/bc5cdr, you need to install the following dependency: bioc. Please install it using 'pip install bioc' for instance. Traceback: Traceback (most recent call last): File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response config_names = get_dataset_config_names( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names dataset_module = dataset_module_factory( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory raise e1 from None File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory return HubDatasetModuleFactoryWithScript( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module local_imports = _download_additional_modules( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules raise ImportError( ImportError: To be able to use bigbio/bc5cdr, you need to install the following dependency: bioc. Please install it using 'pip install bioc' for instance.
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The BioCreative V Chemical Disease Relation (CDR) dataset is a large annotated text corpus of human annotations of all chemicals, diseases and their interactions in 1,500 PubMed articles.
@article{DBLP:journals/biodb/LiSJSWLDMWL16,
author = {Jiao Li and
Yueping Sun and
Robin J. Johnson and
Daniela Sciaky and
Chih{-}Hsuan Wei and
Robert Leaman and
Allan Peter Davis and
Carolyn J. Mattingly and
Thomas C. Wiegers and
Zhiyong Lu},
title = {BioCreative {V} {CDR} task corpus: a resource for chemical disease
relation extraction},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw068},
doi = {10.1093/database/baw068},
timestamp = {Thu, 13 Aug 2020 12:41:41 +0200},
biburl = {https://dblp.org/rec/journals/biodb/LiSJSWLDMWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}