Datasets:
ReaKal
/
hg38.trf.short

Dataset card Viewer Files Community
2
chromosome
stringclasses
1 value
start_position
int64
10k
6.9M
end_position
int64
10.5k
6.9M
computational_method
stringclasses
1 value
period_size
int64
1
12
copy_number
float64
2.1
884
consensus_size
int64
1
14
percent_matches
int64
61
100
percent_indels
int64
0
33
score
int64
50
1.2k
A
int64
0
100
C
int64
0
81
G
int64
0
84
T
int64
0
100
entropy_0-2
float64
0
2
sequence
stringlengths
1
14
chr1
6,255,642
6,255,670
trf
1
28
1
100
0
56
0
0
0
100
0
T
chr1
6,267,461
6,267,487
trf
4
6.5
4
100
0
52
0
46
26
26
1.53
TGCC
chr1
6,275,716
6,275,741
trf
1
25
1
100
0
50
100
0
0
0
0
A
chr1
6,292,661
6,292,696
trf
11
3.3
11
84
8
54
0
0
11
88
0.51
TTTGTTTTTTT
chr1
6,299,665
6,299,691
trf
2
13
2
100
0
52
0
0
50
50
1
GT
chr1
6,315,753
6,315,779
trf
1
26
1
100
0
52
100
0
0
0
0
A
chr1
6,323,737
6,323,770
trf
2
16.5
2
100
0
66
51
0
0
48
1
AT
chr1
6,330,053
6,330,088
trf
2
18
2
88
5
54
0
2
51
45
1.16
GT
chr1
6,332,820
6,332,852
trf
10
3.3
10
91
8
57
90
9
0
0
0.45
AAAAAAACAA
chr1
6,332,820
6,332,852
trf
9
3.4
9
95
4
55
90
9
0
0
0.45
AAAAAAACA
chr1
6,333,703
6,333,735
trf
8
4.1
8
92
8
57
25
62
12
0
1.3
GCCCCCAA
chr1
6,335,327
6,335,352
trf
1
25
1
100
0
50
100
0
0
0
0
A
chr1
6,336,333
6,336,358
trf
1
25
1
100
0
50
100
0
0
0
0
A
chr1
6,344,763
6,344,795
trf
1
32
1
93
0
55
96
0
3
0
0.2
A
chr1
6,354,603
6,354,655
trf
12
5
11
72
27
51
9
46
19
25
1.8
TGGCCTCTCAC
chr1
6,356,391
6,356,473
trf
9
8.7
9
72
25
55
18
54
15
10
1.69
CTCAGCCCG
chr1
6,364,846
6,364,873
trf
1
27
1
100
0
54
100
0
0
0
0
A
chr1
6,368,804
6,368,845
trf
12
3.4
12
93
0
64
9
43
21
24
1.83
CTGCTGCCACTG
chr1
6,370,457
6,370,506
trf
3
16.3
3
100
0
98
32
0
0
67
0.91
TAT
chr1
6,378,067
6,378,097
trf
4
7.5
4
100
0
60
76
23
0
0
0.78
AAAC
chr1
6,399,636
6,399,674
trf
11
3.6
11
82
13
53
42
13
0
44
1.43
CTTTAAACTAT
chr1
6,404,707
6,404,758
trf
4
12.8
4
100
0
102
76
0
0
23
0.79
AAAT
chr1
6,410,005
6,410,035
trf
1
30
1
100
0
60
0
0
0
100
0
T
chr1
6,413,949
6,413,981
trf
5
6.4
5
100
0
64
0
0
21
78
0.76
TGTTT
chr1
6,431,628
6,431,653
trf
1
25
1
100
0
50
100
0
0
0
0
A
chr1
6,431,663
6,431,705
trf
9
4.8
9
82
2
50
71
0
28
0
0.86
AAAGAAAGA
chr1
6,436,482
6,436,520
trf
4
9.5
4
100
0
76
23
0
0
76
0.79
TTAT
chr1
6,463,725
6,463,753
trf
1
28
1
100
0
56
100
0
0
0
0
A
chr1
6,463,929
6,463,974
trf
7
5.9
7
80
19
54
42
0
4
53
1.21
TATTTAA
chr1
6,469,122
6,469,175
trf
3
17.7
3
88
0
79
1
60
1
35
1.19
TCC
chr1
6,475,182
6,475,286
trf
12
8.5
12
88
4
145
9
68
0
21
1.24
CCCTCCTTCCCA
chr1
6,481,524
6,481,579
trf
4
13.8
4
92
0
92
72
0
1
25
0.94
AAAT
chr1
6,482,691
6,482,721
trf
12
2.5
12
94
0
51
23
0
6
70
1.11
TTATGTATTTAT
chr1
6,494,118
6,494,148
trf
1
30
1
100
0
60
0
0
0
100
0
T
chr1
6,516,723
6,516,875
trf
12
13.6
12
70
14
101
28
0
21
50
1.49
TATATATGTGTG
chr1
6,516,786
6,516,906
trf
2
60
2
88
0
69
35
1
14
48
1.54
TA
chr1
6,529,590
6,529,637
trf
12
3.5
13
91
8
69
80
0
0
19
0.7
AAAAAATAAAAAT
chr1
6,529,590
6,529,637
trf
7
7
7
79
16
55
80
0
0
19
0.7
AAAAAAT
chr1
6,536,345
6,536,381
trf
5
7.6
5
87
12
58
83
0
0
16
0.65
AAATA
chr1
6,548,138
6,548,163
trf
1
25
1
100
0
50
0
0
0
100
0
T
chr1
6,549,265
6,549,291
trf
4
6.5
4
100
0
52
53
46
0
0
1
AACC
chr1
6,556,385
6,556,410
trf
4
6.2
4
100
0
50
24
24
0
52
1.48
TCTA
chr1
6,569,996
6,570,051
trf
10
5.2
11
82
10
53
38
0
61
0
0.96
AGGGAGGAGAG
chr1
6,570,024
6,570,051
trf
2
13.5
2
100
0
54
48
0
51
0
1
GA
chr1
6,573,652
6,573,679
trf
6
4.5
6
100
0
54
14
0
0
85
0.61
TTTATT
chr1
6,586,899
6,586,925
trf
9
2.9
9
100
0
52
0
53
11
34
1.37
CCTGCCTTC
chr1
6,608,523
6,608,554
trf
7
4.6
7
92
8
55
87
12
0
0
0.55
AAAAAAC
chr1
6,609,124
6,609,185
trf
8
8.6
7
87
8
72
83
0
0
16
0.64
AAAAATA
chr1
6,609,141
6,609,183
trf
4
11
4
90
10
70
78
0
0
21
0.75
TAAA
chr1
6,613,201
6,613,226
trf
7
3.6
7
100
0
50
16
16
68
0
1.22
AGCGGGG
chr1
6,617,046
6,617,075
trf
12
2.3
13
94
5
51
48
13
17
20
1.81
AAAACTCTGGTAG
chr1
6,620,581
6,620,606
trf
12
2.1
12
100
0
50
32
24
28
16
1.96
GTAAGCATCCAG
chr1
6,641,406
6,641,433
trf
2
13.5
2
100
0
54
51
48
0
0
1
AC
chr1
6,649,932
6,649,958
trf
10
2.6
10
100
0
52
23
11
19
46
1.82
TGTACATGTT
chr1
6,662,118
6,662,149
trf
7
4.6
7
92
8
55
0
0
12
87
0.55
TTGTTTT
chr1
6,669,513
6,669,577
trf
5
12.8
5
100
0
128
79
0
20
0
0.73
AGAAA
chr1
6,686,239
6,686,265
trf
11
2.4
11
100
0
52
53
7
11
26
1.63
GAATAACTTAA
chr1
6,695,627
6,695,658
trf
1
31
1
100
0
62
100
0
0
0
0
A
chr1
6,698,932
6,698,971
trf
10
3.9
10
82
0
51
51
0
0
48
1
ATATATATAA
chr1
6,703,837
6,703,868
trf
7
4.6
7
96
4
55
0
9
0
90
0.46
TTTTTTC
chr1
6,708,960
6,709,001
trf
2
20.5
2
100
0
82
0
48
0
51
1
TC
chr1
6,716,267
6,716,332
trf
6
11.2
6
73
6
62
27
6
63
3
1.33
GAGAGG
chr1
6,719,725
6,719,753
trf
1
28
1
100
0
56
100
0
0
0
0
A
chr1
6,723,051
6,723,076
trf
1
25
1
100
0
50
0
0
0
100
0
T
chr1
6,728,817
6,729,075
trf
2
128
2
76
1
75
40
9
9
40
1.7
AT
chr1
6,732,366
6,732,447
trf
4
19.8
4
98
1
144
0
23
0
76
0.79
TTTC
chr1
6,733,190
6,733,220
trf
2
15
2
100
0
60
50
50
0
0
1
CA
chr1
6,733,599
6,733,628
trf
1
29
1
100
0
58
0
0
0
100
0
T
chr1
6,735,643
6,735,687
trf
1
44
1
86
0
61
93
0
6
0
0.36
A
chr1
6,736,252
6,736,304
trf
4
11.2
5
86
10
51
0
13
0
86
0.57
TCTTT
chr1
6,736,254
6,736,305
trf
9
5.1
10
84
11
61
0
11
0
88
0.52
TTTTCTTTTT
chr1
6,739,034
6,739,188
trf
4
38.5
4
80
0
128
38
49
11
0
1.44
CACA
chr1
6,740,541
6,740,585
trf
2
22
2
100
0
88
0
0
50
50
1
TG
chr1
6,742,487
6,742,518
trf
12
2.6
12
94
0
53
58
0
0
41
0.98
ATATAAATATAT
chr1
6,742,542
6,742,774
trf
2
126
2
65
18
103
45
1
1
51
1.17
TA
chr1
6,748,676
6,748,729
trf
3
17.7
3
80
7
54
0
58
0
41
0.98
CTC
chr1
6,749,404
6,749,491
trf
9
10.1
9
71
12
58
0
43
2
54
1.13
TCCTTCTTC
chr1
6,751,740
6,751,787
trf
2
23.5
2
95
0
85
0
2
46
51
1.13
TG
chr1
6,763,384
6,763,423
trf
5
7.8
5
86
8
53
0
20
0
79
0.73
TTTTC
chr1
6,770,093
6,770,125
trf
1
32
1
100
0
64
100
0
0
0
0
A
chr1
6,777,435
6,777,469
trf
10
3.4
10
92
8
52
88
11
0
0
0.52
AAAACAAAAA
chr1
6,777,984
6,778,011
trf
12
2.2
12
100
0
54
18
18
48
14
1.82
CAGGCTGGAGTG
chr1
6,782,902
6,782,944
trf
12
3.4
12
84
15
59
83
16
0
0
0.65
AAAAAACAAAAC
chr1
6,782,903
6,782,946
trf
11
3.6
11
79
14
50
81
18
0
0
0.69
AAAAACAAAAC
chr1
6,788,158
6,788,184
trf
4
6.5
4
100
0
52
0
73
0
26
0.84
CTCC
chr1
6,790,375
6,790,409
trf
2
17
2
100
0
68
0
0
50
50
1
GT
chr1
6,793,066
6,793,091
trf
11
2.3
11
100
0
50
32
12
0
56
1.36
TCTTATATATA
chr1
6,794,882
6,794,921
trf
8
4.8
8
96
3
69
0
0
10
89
0.48
TTTTTTTG
chr1
6,796,132
6,796,158
trf
1
26
1
100
0
52
0
0
0
100
0
T
chr1
6,822,794
6,822,845
trf
2
25.5
2
91
0
84
49
49
1
0
1.12
CA
chr1
6,836,572
6,836,602
trf
10
3
10
100
0
60
10
0
40
50
1.36
ATGTGTGTGT
chr1
6,839,380
6,839,408
trf
7
4
7
100
0
56
85
14
0
0
0.59
AAAAAAC
chr1
6,858,433
6,858,472
trf
3
13
3
89
10
62
0
0
64
35
0.94
GTG
chr1
6,868,319
6,868,353
trf
5
6.8
5
100
0
68
82
17
0
0
0.67
AAAAC
chr1
6,872,227
6,872,263
trf
3
12
3
93
0
63
33
63
0
2
1.08
CAC
chr1
6,883,434
6,883,462
trf
10
2.8
10
100
0
56
28
10
60
0
1.3
AGGGCAGGAG
chr1
6,884,291
6,884,336
trf
2
22.5
2
100
0
90
51
48
0
0
1
AC
chr1
6,899,554
6,899,594
trf
2
20
2
100
0
80
50
50
0
0
1
CA
chr1
6,902,039
6,902,073
trf
2
17
2
100
0
68
50
50
0
0
1
CA
chr1
6,904,733
6,904,765
trf
1
32
1
100
0
64
0
0
0
100
0
T