required packages for a simple RAG

requirements.txt

@@ -1 +1,174 @@
-huggingface_hub==0.25.2
+# This file may be used to create an environment using:
+# $ conda create --name mneuroRAG --file requirements.txt
+# platform: linux-64
+# created-by: conda 24.9.1
+_libgcc_mutex=0.1=conda_forge
+_openmp_mutex=4.5=2_gnu
+aiohappyeyeballs=2.4.3=pypi_0
+aiohttp=3.10.10=pypi_0
+aiosignal=1.3.1=pypi_0
+annotated-types=0.7.0=pypi_0
+anyio=4.6.0=pypi_0
+asttokens=2.4.1=pyhd8ed1ab_0
+attrs=24.2.0=pypi_0
+beautifulsoup4=4.12.3=pypi_0
+bzip2=1.0.8=h5eee18b_6
+ca-certificates=2024.9.24=h06a4308_0
+certifi=2024.8.30=pypi_0
+charset-normalizer=3.4.0=pypi_0
+click=8.1.7=pypi_0
+comm=0.2.2=pyhd8ed1ab_0
+contourpy=1.3.0=pypi_0
+cycler=0.12.1=pypi_0
+dataclasses-json=0.6.7=pypi_0
+debugpy=1.8.7=py311hfdbb021_0
+decorator=5.1.1=pyhd8ed1ab_0
+deprecated=1.2.14=pypi_0
+dirtyjson=1.0.8=pypi_0
+diskcache=5.6.3=pypi_0
+distro=1.9.0=pypi_0
+dnspython=2.7.0=pypi_0
+exceptiongroup=1.2.2=pyhd8ed1ab_0
+executing=2.1.0=pyhd8ed1ab_0
+filelock=3.16.1=pypi_0
+fonttools=4.54.1=pypi_0
+frozenlist=1.4.1=pypi_0
+fsspec=2024.9.0=pypi_0
+greenlet=3.1.1=pypi_0
+h11=0.14.0=pypi_0
+httpcore=1.0.6=pypi_0
+httpx=0.27.2=pypi_0
+huggingface-hub=0.25.2=pypi_0
+idna=3.10=pypi_0
+importlib-metadata=8.5.0=pyha770c72_0
+ipykernel=6.29.5=pyh3099207_0
+ipython=8.28.0=pyh707e725_0
+jedi=0.19.1=pyhd8ed1ab_0
+jinja2=3.1.4=pypi_0
+jiter=0.6.1=pypi_0
+joblib=1.4.2=pypi_0
+jupyter_client=8.6.3=pyhd8ed1ab_0
+jupyter_core=5.7.2=pyh31011fe_1
+kiwisolver=1.4.7=pypi_0
+krb5=1.21.3=h143b758_0
+ld_impl_linux-64=2.40=h12ee557_0
+libedit=3.1.20230828=h5eee18b_0
+libffi=3.4.4=h6a678d5_1
+libgcc=14.1.0=h77fa898_1
+libgcc-ng=14.1.0=h69a702a_1
+libgomp=14.1.0=h77fa898_1
+libsodium=1.0.20=h4ab18f5_0
+libstdcxx=14.1.0=hc0a3c3a_1
+libstdcxx-ng=11.2.0=h1234567_1
+libuuid=1.41.5=h5eee18b_0
+llama-cloud=0.1.2=pypi_0
+llama-cpp-python=0.2.90=pypi_0
+llama-index=0.11.0=pypi_0
+llama-index-agent-openai=0.3.3=pypi_0
+llama-index-cli=0.3.1=pypi_0
+llama-index-core=0.11.0.post1=pypi_0
+llama-index-embeddings-huggingface=0.3.1=pypi_0
+llama-index-embeddings-openai=0.2.5=pypi_0
+llama-index-indices-managed-llama-cloud=0.3.1=pypi_0
+llama-index-legacy=0.9.48.post3=pypi_0
+llama-index-llms-llama-cpp=0.2.3=pypi_0
+llama-index-llms-openai=0.2.2=pypi_0
+llama-index-multi-modal-llms-openai=0.2.1=pypi_0
+llama-index-program-openai=0.2.0=pypi_0
+llama-index-question-gen-openai=0.2.0=pypi_0
+llama-index-readers-file=0.2.2=pypi_0
+llama-index-readers-llama-parse=0.3.0=pypi_0
+llama-index-vector-stores-mongodb=0.3.2=pypi_0
+llama-parse=0.5.7=pypi_0
+markupsafe=3.0.1=pypi_0
+marshmallow=3.22.0=pypi_0
+matplotlib=3.9.2=pypi_0
+matplotlib-inline=0.1.7=pyhd8ed1ab_0
+minijinja=2.2.0=pypi_0
+mpmath=1.3.0=pypi_0
+multidict=6.1.0=pypi_0
+mypy-extensions=1.0.0=pypi_0
+ncurses=6.4=h6a678d5_0
+nest-asyncio=1.6.0=pyhd8ed1ab_0
+networkx=3.4=pypi_0
+nltk=3.9.1=pypi_0
+numpy=1.26.4=pypi_0
+nvidia-cublas-cu12=12.1.3.1=pypi_0
+nvidia-cuda-cupti-cu12=12.1.105=pypi_0
+nvidia-cuda-nvrtc-cu12=12.1.105=pypi_0
+nvidia-cuda-runtime-cu12=12.1.105=pypi_0
+nvidia-cudnn-cu12=9.1.0.70=pypi_0
+nvidia-cufft-cu12=11.0.2.54=pypi_0
+nvidia-curand-cu12=10.3.2.106=pypi_0
+nvidia-cusolver-cu12=11.4.5.107=pypi_0
+nvidia-cusparse-cu12=12.1.0.106=pypi_0
+nvidia-nccl-cu12=2.20.5=pypi_0
+nvidia-nvjitlink-cu12=12.6.77=pypi_0
+nvidia-nvtx-cu12=12.1.105=pypi_0
+openai=1.51.2=pypi_0
+openssl=3.3.2=hb9d3cd8_0
+packaging=24.1=pyhd8ed1ab_0
+pandas=2.2.3=pypi_0
+parso=0.8.4=pyhd8ed1ab_0
+pexpect=4.9.0=pyhd8ed1ab_0
+pickleshare=0.7.5=py_1003
+pillow=10.4.0=pypi_0
+pip=24.2=py311h06a4308_0
+platformdirs=4.3.6=pyhd8ed1ab_0
+prompt-toolkit=3.0.48=pyha770c72_0
+propcache=0.2.0=pypi_0
+psutil=6.0.0=py311h9ecbd09_1
+ptyprocess=0.7.0=pyhd3deb0d_0
+pure_eval=0.2.3=pyhd8ed1ab_0
+pydantic=2.9.2=pypi_0
+pydantic-core=2.23.4=pypi_0
+pygments=2.18.0=pyhd8ed1ab_0
+pymongo=4.10.1=pypi_0
+pymupdf=1.24.11=pypi_0
+pyparsing=3.1.4=pypi_0
+pypdf=4.3.1=pypi_0
+python=3.11.5=h955ad1f_0
+python-dateutil=2.9.0=pyhd8ed1ab_0
+python_abi=3.11=2_cp311
+pytz=2024.2=pypi_0
+pyyaml=6.0.2=pypi_0
+pyzmq=26.2.0=py311h7deb3e3_3
+readline=8.2=h5eee18b_0
+regex=2024.9.11=pypi_0
+requests=2.32.3=pypi_0
+safetensors=0.4.5=pypi_0
+scikit-learn=1.5.2=pypi_0
+scipy=1.14.1=pypi_0
+sentence-transformers=3.2.0=pypi_0
+setuptools=75.1.0=py311h06a4308_0
+six=1.16.0=pyh6c4a22f_0
+sniffio=1.3.1=pypi_0
+soupsieve=2.6=pypi_0
+sqlalchemy=2.0.35=pypi_0
+sqlite=3.45.3=h5eee18b_0
+stack_data=0.6.2=pyhd8ed1ab_0
+striprtf=0.0.26=pypi_0
+sympy=1.13.3=pypi_0
+tenacity=8.5.0=pypi_0
+threadpoolctl=3.5.0=pypi_0
+tiktoken=0.8.0=pypi_0
+tk=8.6.14=h39e8969_0
+tokenizers=0.20.1=pypi_0
+torch=2.4.1=pypi_0
+tornado=6.4.1=py311h9ecbd09_1
+tqdm=4.66.5=pypi_0
+traitlets=5.14.3=pyhd8ed1ab_0
+transformers=4.45.2=pypi_0
+triton=3.0.0=pypi_0
+typing-inspect=0.9.0=pypi_0
+typing_extensions=4.12.2=pyha770c72_0
+tzdata=2024.2=pypi_0
+urllib3=2.2.3=pypi_0
+wcwidth=0.2.13=pyhd8ed1ab_0
+wheel=0.44.0=py311h06a4308_0
+wrapt=1.16.0=pypi_0
+xz=5.4.6=h5eee18b_1
+yarl=1.14.0=pypi_0
+zeromq=4.3.5=h3b0a872_6
+zipp=3.20.2=pyhd8ed1ab_0
+zlib=1.2.13=h5eee18b_1