from torch.jit import Final import torch.nn.functional as F from itertools import repeat import collections.abc import torch import torch.nn as nn class Attention(nn.Module): fast_attn: Final[bool] def __init__( self, dim, num_heads=8, qkv_bias=False, qk_norm=False, attn_drop=0, proj_drop=0, norm_layer=nn.LayerNorm, ): super().__init__() assert dim % num_heads == 0, "dim should be divisible by num_heads" self.num_heads = num_heads self.head_dim = dim // num_heads self.scale = self.head_dim**-0.5 self.fast_attn = hasattr( torch.nn.functional, "scaled_dot_product_attention" ) # FIXME assert self.fast_attn, "scaled_dot_product_attention Not implemented" self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias) self.q_norm = norm_layer(self.head_dim) if qk_norm else nn.Identity() self.k_norm = norm_layer(self.head_dim) if qk_norm else nn.Identity() self.attn_drop = nn.Dropout(attn_drop) self.proj = nn.Linear(dim, dim) self.proj_drop = nn.Dropout(proj_drop) def forward(self, x, node_mask): B, N, D = x.shape # B, head, N, head_dim qkv = ( self.qkv(x) .reshape(B, N, 3, self.num_heads, self.head_dim) .permute(2, 0, 3, 1, 4) ) q, k, v = qkv.unbind(0) # B, head, N, head_dim q, k = self.q_norm(q), self.k_norm(k) attn_mask = (node_mask[:, None, :, None] & node_mask[:, None, None, :]).expand( -1, self.num_heads, N, N ) extended_nodes = (attn_mask.sum(dim=-1) == 0) attn_mask = attn_mask.clone() attn_mask[extended_nodes] = True x = F.scaled_dot_product_attention( q, k, v, dropout_p=self.attn_drop.p, attn_mask=attn_mask, ) x = x.transpose(1, 2).reshape(B, N, -1) # if no extended nodes, set the output to 0 # x[~node_mask] = 0 x = self.proj(x) x = self.proj_drop(x) return x class MLP(nn.Module): def __init__( self, in_features, hidden_features=None, out_features=None, act_layer=nn.GELU, bias=True, drop=0.0, ): super().__init__() out_features = out_features or in_features hidden_features = hidden_features or in_features bias = to_2tuple(bias) linear_layer = nn.Linear self.fc1 = linear_layer(in_features, hidden_features, bias=bias[0]) self.act = act_layer() self.drop1 = nn.Dropout(drop) self.fc2 = linear_layer(hidden_features, out_features, bias=bias[1]) def forward(self, x): x = self.fc1(x) x = self.act(x) x = self.drop1(x) x = self.fc2(x) return x # From PyTorch internals def _ntuple(n): def parse(x): if isinstance(x, collections.abc.Iterable) and not isinstance(x, str): return tuple(x) return tuple(repeat(x, n)) return parse to_2tuple = _ntuple(2)