Spaces:
Sleeping
Sleeping
nice
Browse files- Symptom2Disease.csv +0 -0
- a.py +7 -0
- app.py +201 -0
- model.py +17 -0
- nltk_u.py +24 -0
- pretrained_symtom_to_disease_model.pth +3 -0
Symptom2Disease.csv
ADDED
The diff for this file is too large to render.
See raw diff
|
|
a.py
ADDED
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
import gradio as gr
|
2 |
+
|
3 |
+
def greet(name):
|
4 |
+
return "Hello " + name + "!!"
|
5 |
+
|
6 |
+
iface = gr.Interface(fn=greet, inputs="text", outputs="text")
|
7 |
+
iface.launch()
|
app.py
ADDED
@@ -0,0 +1,201 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
# Import and class names setup
|
2 |
+
import gradio as gr
|
3 |
+
import os
|
4 |
+
import torch
|
5 |
+
import random
|
6 |
+
#import nltk_utils
|
7 |
+
import pandas as pd
|
8 |
+
from sklearn.model_selection import train_test_split
|
9 |
+
import time
|
10 |
+
|
11 |
+
#from model import RNN_model
|
12 |
+
from timeit import default_timer as timer
|
13 |
+
from typing import Tuple, Dict
|
14 |
+
|
15 |
+
# Import data
|
16 |
+
df= pd.read_csv('Symptom2Disease.csv')
|
17 |
+
df.drop('Unnamed: 0', axis= 1, inplace= True)
|
18 |
+
|
19 |
+
# Preprocess data
|
20 |
+
df.drop_duplicates(inplace= True)
|
21 |
+
train_data, test_data= train_test_split(df, test_size=0.15, random_state=42 )
|
22 |
+
|
23 |
+
# Setup class names
|
24 |
+
class_names= {0: 'Acne',
|
25 |
+
1: 'Arthritis',
|
26 |
+
2: 'Bronchial Asthma',
|
27 |
+
3: 'Cervical spondylosis',
|
28 |
+
4: 'Chicken pox',
|
29 |
+
5: 'Common Cold',
|
30 |
+
6: 'Dengue',
|
31 |
+
7: 'Dimorphic Hemorrhoids',
|
32 |
+
8: 'Fungal infection',
|
33 |
+
9: 'Hypertension',
|
34 |
+
10: 'Impetigo',
|
35 |
+
11: 'Jaundice',
|
36 |
+
12: 'Malaria',
|
37 |
+
13: 'Migraine',
|
38 |
+
14: 'Pneumonia',
|
39 |
+
15: 'Psoriasis',
|
40 |
+
16: 'Typhoid',
|
41 |
+
17: 'Varicose Veins',
|
42 |
+
18: 'allergy',
|
43 |
+
19: 'diabetes',
|
44 |
+
20: 'drug reaction',
|
45 |
+
21: 'gastroesophageal reflux disease',
|
46 |
+
22: 'peptic ulcer disease',
|
47 |
+
23: 'urinary tract infection'
|
48 |
+
}
|
49 |
+
|
50 |
+
#vectorizer= nltk_utils.vectorizer()
|
51 |
+
#vectorizer.fit(train_data.text)
|
52 |
+
|
53 |
+
|
54 |
+
|
55 |
+
# Model and transforms preparation
|
56 |
+
#model= RNN_model()
|
57 |
+
# Load state dict
|
58 |
+
#model.load_state_dict(torch.load(
|
59 |
+
# f= 'pretrained_symtom_to_disease_model.pth',
|
60 |
+
# map_location= torch.device('cpu'))
|
61 |
+
# Disease Advice
|
62 |
+
disease_advice = {
|
63 |
+
'Acne': "Maintain a proper skincare routine, avoid excessive touching of the affected areas, and consider using over-the-counter topical treatments. If severe, consult a dermatologist.",
|
64 |
+
'Arthritis': "Stay active with gentle exercises, manage weight, and consider pain-relief strategies like hot/cold therapy. Consult a rheumatologist for tailored guidance.",
|
65 |
+
'Bronchial Asthma': "Follow prescribed inhaler and medication regimen, avoid triggers like smoke and allergens, and have an asthma action plan. Regular check-ups with a pulmonologist are important.",
|
66 |
+
'Cervical spondylosis': "Maintain good posture, do neck exercises, and use ergonomic support. Physical therapy and pain management techniques might be helpful.",
|
67 |
+
'Chicken pox': "Rest, maintain hygiene, and avoid scratching. Consult a doctor for appropriate antiviral treatment.",
|
68 |
+
'Common Cold': "Get plenty of rest, stay hydrated, and consider over-the-counter remedies for symptom relief. Seek medical attention if symptoms worsen or last long.",
|
69 |
+
'Dengue': "Stay hydrated, rest, and manage fever with acetaminophen. Seek medical care promptly, as dengue can escalate quickly.",
|
70 |
+
'Dimorphic Hemorrhoids': "Follow a high-fiber diet, maintain good hygiene, and consider stool softeners. Consult a doctor if symptoms persist.",
|
71 |
+
'Fungal infection': "Keep the affected area clean and dry, use antifungal creams, and avoid sharing personal items. Consult a dermatologist if it persists.",
|
72 |
+
'Hypertension': "Follow a balanced diet, exercise regularly, reduce salt intake, and take prescribed medications. Regular check-ups with a healthcare provider are important.",
|
73 |
+
'Impetigo': "Keep the affected area clean, use prescribed antibiotics, and avoid close contact. Consult a doctor for proper treatment.",
|
74 |
+
'Jaundice': "Get plenty of rest, maintain hydration, and follow a doctor's advice for diet and medications. Regular monitoring is important.",
|
75 |
+
'Malaria': "Take prescribed antimalarial medications, rest, and manage fever. Seek medical attention for severe cases.",
|
76 |
+
'Migraine': "Identify triggers, manage stress, and consider pain-relief medications. Consult a neurologist for personalized management.",
|
77 |
+
'Pneumonia': "Follow prescribed antibiotics, rest, stay hydrated, and monitor symptoms. Seek immediate medical attention for severe cases.",
|
78 |
+
'Psoriasis': "Moisturize, use prescribed creams, and avoid triggers. Consult a dermatologist for effective management.",
|
79 |
+
'Typhoid': "Take prescribed antibiotics, rest, and stay hydrated. Dietary precautions are important. Consult a doctor for proper treatment.",
|
80 |
+
'Varicose Veins': "Elevate legs, exercise regularly, and wear compression stockings. Consult a vascular specialist for evaluation and treatment options.",
|
81 |
+
'allergy': "Identify triggers, manage exposure, and consider antihistamines. Consult an allergist for comprehensive management.",
|
82 |
+
'diabetes': "Follow a balanced diet, exercise, monitor blood sugar levels, and take prescribed medications. Regular visits to an endocrinologist are essential.",
|
83 |
+
'drug reaction': "Discontinue the suspected medication, seek medical attention if symptoms are severe, and inform healthcare providers about the reaction.",
|
84 |
+
'gastroesophageal reflux disease': "Follow dietary changes, avoid large meals, and consider medications. Consult a doctor for personalized management.",
|
85 |
+
'peptic ulcer disease': "Avoid spicy and acidic foods, take prescribed medications, and manage stress. Consult a gastroenterologist for guidance.",
|
86 |
+
'urinary tract infection': "Stay hydrated, take prescribed antibiotics, and maintain good hygiene. Consult a doctor for appropriate treatment."
|
87 |
+
}
|
88 |
+
|
89 |
+
howto= """Welcome to the <b>Medical Chatbot</b>, powered by Gradio.
|
90 |
+
Currently, the chatbot can WELCOME YOU, PREDICT DISEASE based on your symptoms and SUGGEST POSSIBLE SOLUTIONS AND RECOMENDATIONS, and BID YOU FAREWELL.
|
91 |
+
<br><br>
|
92 |
+
Here's a quick guide to get you started:<br><br>
|
93 |
+
<b>How to Start:</b> Simply type your messages in the textbox to chat with the Chatbot and press enter!<br><br>
|
94 |
+
The bot will respond based on the best possible answers to your messages. For now, let's keep it SIMPLE as I'm working hard to enhance its capabilities in the future.
|
95 |
+
|
96 |
+
"""
|
97 |
+
|
98 |
+
|
99 |
+
# Create the gradio demo
|
100 |
+
with gr.Blocks(css = """#col_container { margin-left: auto; margin-right: auto;} #chatbot {height: 520px; overflow: auto;}""") as demo:
|
101 |
+
gr.HTML('<h1 align="center">Medical Chatbot: Your Virtual Health Guide 🌟🏥🤖"</h1>')
|
102 |
+
gr.HTML('<h3 align="center">To know more about this project click, <a href="https://github.com/Monsurat-Onabajo/Medical_chatbot" target="_blank">Here</a>')
|
103 |
+
with gr.Accordion("Follow these Steps to use the Gradio WebUI", open=True):
|
104 |
+
gr.HTML(howto)
|
105 |
+
chatbot = gr.Chatbot()
|
106 |
+
msg = gr.Textbox()
|
107 |
+
clear = gr.ClearButton([msg, chatbot])
|
108 |
+
|
109 |
+
def respond(message, chat_history):
|
110 |
+
# Random greetings in list format
|
111 |
+
greetings = [
|
112 |
+
"hello!",'hello', 'hii !', 'hi', "hi there!", "hi there!", "heyy", 'good morning', 'good afternoon', 'good evening'
|
113 |
+
"hey", "how are you", "how are you?", "how is it going", "how is it going?",
|
114 |
+
"what's up?", "how are you?",
|
115 |
+
"hey, how are you?", "what is popping"
|
116 |
+
"good to see you!", "howdy!",
|
117 |
+
"hi, nice to meet you.", "hiya!",
|
118 |
+
"hi", "hi, what's new?",
|
119 |
+
"hey, how's your day?", "hi, how have you been?", "greetings",
|
120 |
+
]
|
121 |
+
# Random Greetings responses
|
122 |
+
responses = [
|
123 |
+
"Thank you for using our medical chatbot. Please provide the symptoms you're experiencing, and I'll do my best to predict the possible disease.",
|
124 |
+
"Hello! I'm here to help you with medical predictions based on your symptoms. Please describe your symptoms in as much detail as possible.",
|
125 |
+
"Greetings! I am a specialized medical chatbot trained to predict potential diseases based on the symptoms you provide. Kindly list your symptoms explicitly.",
|
126 |
+
"Welcome to the medical chatbot. To assist you accurately, please share your symptoms in explicit detail.",
|
127 |
+
"Hi there! I'm a medical chatbot specialized in analyzing symptoms to suggest possible diseases. Please provide your symptoms explicitly.",
|
128 |
+
"Hey! I'm your medical chatbot. Describe your symptoms with as much detail as you can, and I'll generate potential disease predictions.",
|
129 |
+
"How can I assist you today? I'm a medical chatbot trained to predict diseases based on symptoms. Please be explicit while describing your symptoms.",
|
130 |
+
"Hello! I'm a medical chatbot capable of predicting diseases based on the symptoms you provide. Your explicit symptom description will help me assist you better.",
|
131 |
+
"Greetings! I'm here to help with medical predictions. Describe your symptoms explicitly, and I'll offer insights into potential diseases.",
|
132 |
+
"Hi, I'm the medical chatbot. I've been trained to predict diseases from symptoms. The more explicit you are about your symptoms, the better I can assist you.",
|
133 |
+
"Hi, I specialize in medical predictions based on symptoms. Kindly provide detailed symptoms for accurate disease predictions.",
|
134 |
+
"Hello! I'm a medical chatbot with expertise in predicting diseases from symptoms. Please describe your symptoms explicitly to receive accurate insights.",
|
135 |
+
]
|
136 |
+
# Random goodbyes
|
137 |
+
goodbyes = [
|
138 |
+
"farewell!",'bye', 'goodbye','good-bye', 'good bye', 'bye', 'thank you', 'later', "take care!",
|
139 |
+
"see you later!", 'see you', 'see ya', 'see-you', 'thanks', 'thank', 'bye bye', 'byebye'
|
140 |
+
"catch you on the flip side!", "adios!",
|
141 |
+
"goodbye for now!", "till we meet again!",
|
142 |
+
"so long!", "hasta la vista!",
|
143 |
+
"bye-bye!", "keep in touch!",
|
144 |
+
"toodles!", "ciao!",
|
145 |
+
"later, gator!", "stay safe and goodbye!",
|
146 |
+
"peace out!", "until next time!", "off I go!",
|
147 |
+
]
|
148 |
+
# Random Goodbyes responses
|
149 |
+
goodbye_replies = [
|
150 |
+
"Take care of yourself! If you have more questions, don't hesitate to reach out.",
|
151 |
+
"Stay well! Remember, I'm here if you need further medical advice.",
|
152 |
+
"Goodbye for now! Don't hesitate to return if you need more information in the future.",
|
153 |
+
"Wishing you good health ahead! Feel free to come back if you have more concerns.",
|
154 |
+
"Farewell! If you have more symptoms or questions, don't hesitate to consult again.",
|
155 |
+
"Take care and stay informed about your health. Feel free to chat anytime.",
|
156 |
+
"Bye for now! Remember, your well-being is a priority. Don't hesitate to ask if needed.",
|
157 |
+
"Have a great day ahead! If you need medical guidance later on, I'll be here.",
|
158 |
+
"Stay well and take it easy! Reach out if you need more medical insights.",
|
159 |
+
"Until next time! Prioritize your health and reach out if you need assistance.",
|
160 |
+
"Goodbye! Your health matters. Feel free to return if you have more health-related queries.",
|
161 |
+
"Stay healthy and stay curious about your health! If you need more info, just ask.",
|
162 |
+
"Wishing you wellness on your journey! If you have more questions, I'm here to help.",
|
163 |
+
"Take care and remember, your health is important. Don't hesitate to reach out if needed.",
|
164 |
+
"Goodbye for now! Stay informed and feel free to consult if you require medical advice.",
|
165 |
+
"Stay well and stay proactive about your health! If you have more queries, feel free to ask.",
|
166 |
+
"Farewell! Remember, I'm here whenever you need reliable medical information.",
|
167 |
+
"Bye for now! Stay vigilant about your health and don't hesitate to return if necessary.",
|
168 |
+
"Take care and keep your well-being a priority! Reach out if you have more health questions.",
|
169 |
+
"Wishing you good health ahead! Don't hesitate to chat if you need medical insights.",
|
170 |
+
"Goodbye! Stay well and remember, I'm here to assist you with medical queries.",
|
171 |
+
]
|
172 |
+
|
173 |
+
# Create couple of if-else statements to capture/mimick peoples's Interaction
|
174 |
+
|
175 |
+
if message.lower() in greetings:
|
176 |
+
bot_message= random.choice(responses)
|
177 |
+
elif message.lower() in goodbyes:
|
178 |
+
bot_message= random.choice(goodbye_replies)
|
179 |
+
else:
|
180 |
+
bot_message= random.choice(goodbye_replies)
|
181 |
+
'''
|
182 |
+
else:
|
183 |
+
transform_text= vectorizer.transform([message])
|
184 |
+
transform_text= torch.tensor(transform_text.toarray()).to(torch.float32)
|
185 |
+
model.eval()
|
186 |
+
with torch.inference_mode():
|
187 |
+
y_logits=model(transform_text)
|
188 |
+
pred_prob= torch.argmax(torch.softmax(y_logits, dim=1), dim=1)
|
189 |
+
|
190 |
+
test_pred= class_names[pred_prob.item()]
|
191 |
+
bot_message = f' Based on your symptoms, I believe you are having {test_pred} and I would advice you {disease_advice[test_pred]}'
|
192 |
+
chat_history.append((message, bot_message))
|
193 |
+
time.sleep(2)
|
194 |
+
return "", chat_history
|
195 |
+
'''
|
196 |
+
msg.submit(respond, [msg, chatbot], [msg, chatbot])
|
197 |
+
|
198 |
+
|
199 |
+
# Launch the demo
|
200 |
+
demo.launch()
|
201 |
+
|
model.py
ADDED
@@ -0,0 +1,17 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
import torch
|
2 |
+
from torch import nn
|
3 |
+
|
4 |
+
class RNN_model(nn.Module):
|
5 |
+
def __init__(self):
|
6 |
+
super().__init__()
|
7 |
+
|
8 |
+
self.rnn= nn.RNN(input_size=1080, hidden_size=240,num_layers=1, nonlinearity= 'relu', bias= True)
|
9 |
+
self.output= nn.Linear(in_features=240, out_features=24)
|
10 |
+
|
11 |
+
def forward(self, x):
|
12 |
+
y, hidden= self.rnn(x)
|
13 |
+
#print(y.shape)
|
14 |
+
#print(hidden.shape)
|
15 |
+
x= self.output(y)
|
16 |
+
|
17 |
+
return(x)
|
nltk_u.py
ADDED
@@ -0,0 +1,24 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
# Import Libraries
|
2 |
+
import nltk
|
3 |
+
from nltk.tokenize import word_tokenize
|
4 |
+
nltk.download('punkt')
|
5 |
+
from sklearn.feature_extraction.text import TfidfVectorizer
|
6 |
+
from nltk.stem import SnowballStemmer
|
7 |
+
stemmer= SnowballStemmer(language= 'english')
|
8 |
+
from nltk.corpus import stopwords
|
9 |
+
nltk.download('stopwords')
|
10 |
+
|
11 |
+
# Tokenize text i.e make all text be in a list format e.g "I am sick" = ['i', 'am', 'sick']
|
12 |
+
def tokenize(text):
|
13 |
+
return [stemmer.stem(token) for token in word_tokenize(text)]
|
14 |
+
|
15 |
+
# Create stopwords to reduce noise in data
|
16 |
+
english_stopwords= stopwords.words('english')
|
17 |
+
|
18 |
+
# Create a vectosizer to learn all words in order to convert them into numbers
|
19 |
+
def vectorizer():
|
20 |
+
vectorizer= TfidfVectorizer(tokenizer=tokenize,
|
21 |
+
stop_words=english_stopwords,
|
22 |
+
)
|
23 |
+
return vectorizer
|
24 |
+
|
pretrained_symtom_to_disease_model.pth
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:d182949722a706bed0e7c6319bb893eccc31f8d2b502d023750e0beafd5da8fe
|
3 |
+
size 1294703
|