oneformer/evaluation/coco_evaluator.py

# ------------------------------------------------------------------------------
# Reference: https://github.com/facebookresearch/detectron2/blob/main/detectron2/evaluation/coco_evaluation.py
# Modified by Jitesh Jain (https://github.com/praeclarumjj3)
# ------------------------------------------------------------------------------

import contextlib
import copy
import io
import itertools
import json
import logging
import numpy as np
import os
import pickle
from collections import OrderedDict
import pycocotools.mask as mask_util
import torch
from pycocotools.coco import COCO
from pycocotools.cocoeval import COCOeval
from tabulate import tabulate

import detectron2.utils.comm as comm
from detectron2.config import CfgNode
from detectron2.data import MetadataCatalog
from detectron2.data.datasets.coco import convert_to_coco_json
from detectron2.structures import Boxes, BoxMode, pairwise_iou
from detectron2.utils.file_io import PathManager
from detectron2.utils.logger import create_small_table

from .evaluator import DatasetEvaluator

try:
    from detectron2.evaluation.fast_eval_api import COCOeval_opt
except ImportError:
    COCOeval_opt = COCOeval


class COCOEvaluator(DatasetEvaluator):
    """
    Evaluate AP for instance detection/segmentation, AP
    for keypoint detection outputs using COCO's metrics.
    See http://cocodataset.org/#detection-eval and
    http://cocodataset.org/#keypoints-eval to understand its metrics.
    The metrics range from 0 to 100 (instead of 0 to 1), where a -1 or NaN means
    the metric cannot be computed (e.g. due to no predictions made).

    In addition to COCO, this evaluator is able to support any bounding box detection,
    instance segmentation, or keypoint detection dataset.
    """

    def __init__(
        self,
        dataset_name,
        tasks=None,
        distributed=True,
        output_dir=None,
        *,
        max_dets_per_image=None,
        use_fast_impl=True,
        kpt_oks_sigmas=(),
        allow_cached_coco=True,
    ):
        """
        Args:
            dataset_name (str): name of the dataset to be evaluated.
                It must have either the following corresponding metadata:

                    "json_file": the path to the COCO format annotation

                Or it must be in detectron2's standard dataset format
                so it can be converted to COCO format automatically.
            tasks (tuple[str]): tasks that can be evaluated under the given
                configuration. A task is one of "bbox", "segm", "keypoints".
                By default, will infer this automatically from predictions.
            distributed (True): if True, will collect results from all ranks and run evaluation
                in the main process.
                Otherwise, will only evaluate the results in the current process.
            output_dir (str): optional, an output directory to dump all
                results predicted on the dataset. The dump contains two files:

                1. "instances_predictions.pth" a file that can be loaded with `torch.load` and
                   contains all the results in the format they are produced by the model.
                2. "coco_instances_results.json" a json file in COCO's result format.
            max_dets_per_image (int): limit on the maximum number of detections per image.
                By default in COCO, this limit is to 100, but this can be customized
                to be greater, as is needed in evaluation metrics AP fixed and AP pool
                (see https://arxiv.org/pdf/2102.01066.pdf)
                This doesn't affect keypoint evaluation.
            use_fast_impl (bool): use a fast but **unofficial** implementation to compute AP.
                Although the results should be very close to the official implementation in COCO
                API, it is still recommended to compute results with the official API for use in
                papers. The faster implementation also uses more RAM.
            kpt_oks_sigmas (list[float]): The sigmas used to calculate keypoint OKS.
                See http://cocodataset.org/#keypoints-eval
                When empty, it will use the defaults in COCO.
                Otherwise it should be the same length as ROI_KEYPOINT_HEAD.NUM_KEYPOINTS.
            allow_cached_coco (bool): Whether to use cached coco json from previous validation
                runs. You should set this to False if you need to use different validation data.
                Defaults to True.
        """
        self._logger = logging.getLogger(__name__)
        self._distributed = distributed
        self._output_dir = output_dir

        if use_fast_impl and (COCOeval_opt is COCOeval):
            self._logger.info("Fast COCO eval is not built. Falling back to official COCO eval.")
            use_fast_impl = False
        self._use_fast_impl = use_fast_impl

        # COCOeval requires the limit on the number of detections per image (maxDets) to be a list
        # with at least 3 elements. The default maxDets in COCOeval is [1, 10, 100], in which the
        # 3rd element (100) is used as the limit on the number of detections per image when
        # evaluating AP. COCOEvaluator expects an integer for max_dets_per_image, so for COCOeval,
        # we reformat max_dets_per_image into [1, 10, max_dets_per_image], based on the defaults.
        if max_dets_per_image is None:
            max_dets_per_image = [1, 10, 100]
        else:
            max_dets_per_image = [1, 10, max_dets_per_image]
        self._max_dets_per_image = max_dets_per_image

        if tasks is not None and isinstance(tasks, CfgNode):
            kpt_oks_sigmas = (
                tasks.TEST.KEYPOINT_OKS_SIGMAS if not kpt_oks_sigmas else kpt_oks_sigmas
            )
            self._logger.warn(
                "COCO Evaluator instantiated using config, this is deprecated behavior."
                " Please pass in explicit arguments instead."
            )
            self._tasks = None  # Infering it from predictions should be better
        else:
            self._tasks = tasks

        self._cpu_device = torch.device("cpu")

        self._metadata = MetadataCatalog.get(dataset_name)
        if not hasattr(self._metadata, "json_file"):
            if output_dir is None:
                raise ValueError(
                    "output_dir must be provided to COCOEvaluator "
                    "for datasets not in COCO format."
                )
            self._logger.info(f"Trying to convert '{dataset_name}' to COCO format ...")

            cache_path = os.path.join(output_dir, f"{dataset_name}_coco_format.json")
            self._metadata.json_file = cache_path
            convert_to_coco_json(dataset_name, cache_path, allow_cached=allow_cached_coco)

        json_file = PathManager.get_local_path(self._metadata.json_file)
        with contextlib.redirect_stdout(io.StringIO()):
            self._coco_api = COCO(json_file)

        # Test set json files do not contain annotations (evaluation must be
        # performed using the COCO evaluation server).
        self._do_evaluation = "annotations" in self._coco_api.dataset
        if self._do_evaluation:
            self._kpt_oks_sigmas = kpt_oks_sigmas

    def reset(self):
        self._predictions = []

    def process(self, inputs, outputs):
        """
        Args:
            inputs: the inputs to a COCO model (e.g., GeneralizedRCNN).
                It is a list of dict. Each dict corresponds to an image and
                contains keys like "height", "width", "file_name", "image_id".
            outputs: the outputs of a COCO model. It is a list of dicts with key
                "instances" that contains :class:`Instances`.
        """
        for input, output in zip(inputs, outputs):
            prediction = {"image_id": input["image_id"]}

            if "instances" in output:
                instances = output["instances"].to(self._cpu_device)
                prediction["instances"] = instances_to_coco_json(instances, input["image_id"])
            if len(prediction) > 1:
                self._predictions.append(prediction)

    def evaluate(self, img_ids=None):
        """
        Args:
            img_ids: a list of image IDs to evaluate on. Default to None for the whole dataset
        """
        if self._distributed:
            comm.synchronize()
            predictions = comm.gather(self._predictions, dst=0)
            predictions = list(itertools.chain(*predictions))

            if not comm.is_main_process():
                return {}
        else:
            predictions = self._predictions

        if len(predictions) == 0:
            self._logger.warning("[COCOEvaluator] Did not receive valid predictions.")
            return {}

        if self._output_dir:
            PathManager.mkdirs(self._output_dir)
            file_path = os.path.join(self._output_dir, "instances_predictions.pth")
            with PathManager.open(file_path, "wb") as f:
                torch.save(predictions, f)

        self._results = OrderedDict()
        if "instances" in predictions[0]:
            self._eval_predictions(predictions, img_ids=img_ids)
        # Copy so the caller can do whatever with results
        return copy.deepcopy(self._results)

    def _tasks_from_predictions(self, predictions):
        """
        Get COCO API "tasks" (i.e. iou_type) from COCO-format predictions.
        """
        for pred in predictions:
            if "segmentation" in pred:
                tasks = {"segm"}
            if "keypoints" in pred:
                tasks.add("keypoints")
        return sorted(tasks)

    def _eval_predictions(self, predictions, img_ids=None):
        """
        Evaluate predictions. Fill self._results with the metrics of the tasks.
        """
        self._logger.info("Preparing results for COCO format ...")
        coco_results = list(itertools.chain(*[x["instances"] for x in predictions]))
        tasks = self._tasks or self._tasks_from_predictions(coco_results)

        # unmap the category ids for COCO
        if hasattr(self._metadata, "thing_dataset_id_to_contiguous_id"):
            dataset_id_to_contiguous_id = self._metadata.thing_dataset_id_to_contiguous_id
            all_contiguous_ids = list(dataset_id_to_contiguous_id.values())
            num_classes = len(all_contiguous_ids)
            assert min(all_contiguous_ids) == 0 and max(all_contiguous_ids) == num_classes - 1

            reverse_id_mapping = {v: k for k, v in dataset_id_to_contiguous_id.items()}
            for result in coco_results:
                category_id = result["category_id"]
                assert category_id < num_classes, (
                    f"A prediction has class={category_id}, "
                    f"but the dataset only has {num_classes} classes and "
                    f"predicted class id should be in [0, {num_classes - 1}]."
                )
                result["category_id"] = reverse_id_mapping[category_id]

        if self._output_dir:
            file_path = os.path.join(self._output_dir, "coco_instances_results.json")
            self._logger.info("Saving results to {}".format(file_path))
            with PathManager.open(file_path, "w") as f:
                f.write(json.dumps(coco_results))
                f.flush()

        if not self._do_evaluation:
            self._logger.info("Annotations are not available for evaluation.")
            return

        self._logger.info(
            "Evaluating predictions with {} COCO API...".format(
                "unofficial" if self._use_fast_impl else "official"
            )
        )
        for task in sorted(tasks):
            assert task in {"segm", "keypoints"}, f"Got unknown task: {task}!"
            coco_eval = (
                _evaluate_predictions_on_coco(
                    self._coco_api,
                    coco_results,
                    task,
                    kpt_oks_sigmas=self._kpt_oks_sigmas,
                    use_fast_impl=self._use_fast_impl,
                    img_ids=img_ids,
                    max_dets_per_image=self._max_dets_per_image,
                )
                if len(coco_results) > 0
                else None  # cocoapi does not handle empty results very well
            )

            res = self._derive_coco_results(
                coco_eval, task, class_names=self._metadata.get("thing_classes")
            )
            self._results[task] = res

    def _derive_coco_results(self, coco_eval, iou_type, class_names=None):
        """
        Derive the desired score numbers from summarized COCOeval.

        Args:
            coco_eval (None or COCOEval): None represents no predictions from model.
            iou_type (str):
            class_names (None or list[str]): if provided, will use it to predict
                per-category AP.

        Returns:
            a dict of {metric name: score}
        """

        metrics = {
            "segm": ["AP", "AP50", "AP75", "APs", "APm", "APl"],
            "keypoints": ["AP", "AP50", "AP75", "APm", "APl"],
        }[iou_type]

        if coco_eval is None:
            self._logger.warn("No predictions from the model!")
            return {metric: float("nan") for metric in metrics}

        # the standard metrics
        results = {
            metric: float(coco_eval.stats[idx] * 100 if coco_eval.stats[idx] >= 0 else "nan")
            for idx, metric in enumerate(metrics)
        }
        self._logger.info(
            "Evaluation results for {}: \n".format(iou_type) + create_small_table(results)
        )
        if not np.isfinite(sum(results.values())):
            self._logger.info("Some metrics cannot be computed and is shown as NaN.")

        if class_names is None or len(class_names) <= 1:
            return results
        # Compute per-category AP
        # from https://github.com/facebookresearch/Detectron/blob/a6a835f5b8208c45d0dce217ce9bbda915f44df7/detectron/datasets/json_dataset_evaluator.py#L222-L252 # noqa
        precisions = coco_eval.eval["precision"]
        # precision has dims (iou, recall, cls, area range, max dets)
        assert len(class_names) == precisions.shape[2]

        results_per_category = []
        for idx, name in enumerate(class_names):
            # area range index 0: all area ranges
            # max dets index -1: typically 100 per image
            precision = precisions[:, :, idx, 0, -1]
            precision = precision[precision > -1]
            ap = np.mean(precision) if precision.size else float("nan")
            results_per_category.append(("{}".format(name), float(ap * 100)))

        # tabulate it
        N_COLS = min(6, len(results_per_category) * 2)
        results_flatten = list(itertools.chain(*results_per_category))
        results_2d = itertools.zip_longest(*[results_flatten[i::N_COLS] for i in range(N_COLS)])
        table = tabulate(
            results_2d,
            tablefmt="pipe",
            floatfmt=".3f",
            headers=["category", "AP"] * (N_COLS // 2),
            numalign="left",
        )
        self._logger.info("Per-category {} AP: \n".format(iou_type) + table)

        results.update({"AP-" + name: ap for name, ap in results_per_category})
        return results


def instances_to_coco_json(instances, img_id):
    """
    Dump an "Instances" object to a COCO-format json that's used for evaluation.

    Args:
        instances (Instances):
        img_id (int): the image id

    Returns:
        list[dict]: list of json annotations in COCO format.
    """
    num_instance = len(instances)
    if num_instance == 0:
        return []

    scores = instances.scores.tolist()
    classes = instances.pred_classes.tolist()

    has_mask = instances.has("pred_masks")
    if has_mask:
        # use RLE to encode the masks, because they are too large and takes memory
        # since this evaluator stores outputs of the entire dataset
        rles = [
            mask_util.encode(np.array(mask[:, :, None], order="F", dtype="uint8"))[0]
            for mask in instances.pred_masks
        ]
        for rle in rles:
            # "counts" is an array encoded by mask_util as a byte-stream. Python3's
            # json writer which always produces strings cannot serialize a bytestream
            # unless you decode it. Thankfully, utf-8 works out (which is also what
            # the pycocotools/_mask.pyx does).
            rle["counts"] = rle["counts"].decode("utf-8")

    has_keypoints = instances.has("pred_keypoints")
    if has_keypoints:
        keypoints = instances.pred_keypoints

    results = []
    for k in range(num_instance):
        result = {
            "image_id": img_id,
            "category_id": classes[k],
            "score": scores[k],
        }
        if has_mask:
            result["segmentation"] = rles[k]
        if has_keypoints:
            # In COCO annotations,
            # keypoints coordinates are pixel indices.
            # However our predictions are floating point coordinates.
            # Therefore we subtract 0.5 to be consistent with the annotation format.
            # This is the inverse of data loading logic in `datasets/coco.py`.
            keypoints[k][:, :2] -= 0.5
            result["keypoints"] = keypoints[k].flatten().tolist()
        results.append(result)
    return results

def _evaluate_predictions_on_coco(
    coco_gt,
    coco_results,
    iou_type,
    kpt_oks_sigmas=None,
    use_fast_impl=True,
    img_ids=None,
    max_dets_per_image=None,
):
    """
    Evaluate the coco results using COCOEval API.
    """
    assert len(coco_results) > 0

    if iou_type == "segm":
        coco_results = copy.deepcopy(coco_results)
        # When evaluating mask AP, if the results contain bbox, cocoapi will
        # use the box area as the area of the instance, instead of the mask area.
        # This leads to a different definition of small/medium/large.
        # We remove the bbox field to let mask AP use mask area.
        for c in coco_results:
            c.pop("bbox", None)

    coco_dt = coco_gt.loadRes(coco_results)
    coco_eval = (COCOeval_opt if use_fast_impl else COCOeval)(coco_gt, coco_dt, iou_type)
    # For COCO, the default max_dets_per_image is [1, 10, 100].
    if max_dets_per_image is None:
        max_dets_per_image = [1, 10, 100]  # Default from COCOEval
    else:
        assert (
            len(max_dets_per_image) >= 3
        ), "COCOeval requires maxDets (and max_dets_per_image) to have length at least 3"
        # In the case that user supplies a custom input for max_dets_per_image,
        # apply COCOevalMaxDets to evaluate AP with the custom input.
        if max_dets_per_image[2] != 100:
            coco_eval = COCOevalMaxDets(coco_gt, coco_dt, iou_type)
    if iou_type != "keypoints":
        coco_eval.params.maxDets = max_dets_per_image

    if img_ids is not None:
        coco_eval.params.imgIds = img_ids

    if iou_type == "keypoints":
        # Use the COCO default keypoint OKS sigmas unless overrides are specified
        if kpt_oks_sigmas:
            assert hasattr(coco_eval.params, "kpt_oks_sigmas"), "pycocotools is too old!"
            coco_eval.params.kpt_oks_sigmas = np.array(kpt_oks_sigmas)
        # COCOAPI requires every detection and every gt to have keypoints, so
        # we just take the first entry from both
        num_keypoints_dt = len(coco_results[0]["keypoints"]) // 3
        num_keypoints_gt = len(next(iter(coco_gt.anns.values()))["keypoints"]) // 3
        num_keypoints_oks = len(coco_eval.params.kpt_oks_sigmas)
        assert num_keypoints_oks == num_keypoints_dt == num_keypoints_gt, (
            f"[COCOEvaluator] Prediction contain {num_keypoints_dt} keypoints. "
            f"Ground truth contains {num_keypoints_gt} keypoints. "
            f"The length of cfg.TEST.KEYPOINT_OKS_SIGMAS is {num_keypoints_oks}. "
            "They have to agree with each other. For meaning of OKS, please refer to "
            "http://cocodataset.org/#keypoints-eval."
        )

    coco_eval.evaluate()
    coco_eval.accumulate()
    coco_eval.summarize()

    return coco_eval


class COCOevalMaxDets(COCOeval):
    """
    Modified version of COCOeval for evaluating AP with a custom
    maxDets (by default for COCO, maxDets is 100)
    """

    def summarize(self):
        """
        Compute and display summary metrics for evaluation results given
        a custom value for  max_dets_per_image
        """

        def _summarize(ap=1, iouThr=None, areaRng="all", maxDets=100):
            p = self.params
            iStr = " {:<18} {} @[ IoU={:<9} | area={:>6s} | maxDets={:>3d} ] = {:0.3f}"
            titleStr = "Average Precision" if ap == 1 else "Average Recall"
            typeStr = "(AP)" if ap == 1 else "(AR)"
            iouStr = (
                "{:0.2f}:{:0.2f}".format(p.iouThrs[0], p.iouThrs[-1])
                if iouThr is None
                else "{:0.2f}".format(iouThr)
            )

            aind = [i for i, aRng in enumerate(p.areaRngLbl) if aRng == areaRng]
            mind = [i for i, mDet in enumerate(p.maxDets) if mDet == maxDets]
            if ap == 1:
                # dimension of precision: [TxRxKxAxM]
                s = self.eval["precision"]
                # IoU
                if iouThr is not None:
                    t = np.where(iouThr == p.iouThrs)[0]
                    s = s[t]
                s = s[:, :, :, aind, mind]
            else:
                # dimension of recall: [TxKxAxM]
                s = self.eval["recall"]
                if iouThr is not None:
                    t = np.where(iouThr == p.iouThrs)[0]
                    s = s[t]
                s = s[:, :, aind, mind]
            if len(s[s > -1]) == 0:
                mean_s = -1
            else:
                mean_s = np.mean(s[s > -1])
            print(iStr.format(titleStr, typeStr, iouStr, areaRng, maxDets, mean_s))
            return mean_s

        def _summarizeDets():
            stats = np.zeros((12,))
            # Evaluate AP using the custom limit on maximum detections per image
            stats[0] = _summarize(1, maxDets=self.params.maxDets[2])
            stats[1] = _summarize(1, iouThr=0.5, maxDets=self.params.maxDets[2])
            stats[2] = _summarize(1, iouThr=0.75, maxDets=self.params.maxDets[2])
            stats[3] = _summarize(1, areaRng="small", maxDets=self.params.maxDets[2])
            stats[4] = _summarize(1, areaRng="medium", maxDets=self.params.maxDets[2])
            stats[5] = _summarize(1, areaRng="large", maxDets=self.params.maxDets[2])
            stats[6] = _summarize(0, maxDets=self.params.maxDets[0])
            stats[7] = _summarize(0, maxDets=self.params.maxDets[1])
            stats[8] = _summarize(0, maxDets=self.params.maxDets[2])
            stats[9] = _summarize(0, areaRng="small", maxDets=self.params.maxDets[2])
            stats[10] = _summarize(0, areaRng="medium", maxDets=self.params.maxDets[2])
            stats[11] = _summarize(0, areaRng="large", maxDets=self.params.maxDets[2])
            return stats

        def _summarizeKps():
            stats = np.zeros((10,))
            stats[0] = _summarize(1, maxDets=20)
            stats[1] = _summarize(1, maxDets=20, iouThr=0.5)
            stats[2] = _summarize(1, maxDets=20, iouThr=0.75)
            stats[3] = _summarize(1, maxDets=20, areaRng="medium")
            stats[4] = _summarize(1, maxDets=20, areaRng="large")
            stats[5] = _summarize(0, maxDets=20)
            stats[6] = _summarize(0, maxDets=20, iouThr=0.5)
            stats[7] = _summarize(0, maxDets=20, iouThr=0.75)
            stats[8] = _summarize(0, maxDets=20, areaRng="medium")
            stats[9] = _summarize(0, maxDets=20, areaRng="large")
            return stats

        if not self.eval:
            raise Exception("Please run accumulate() first")
        iouType = self.params.iouType
        if iouType == "segm":
            summarize = _summarizeDets
        elif iouType == "keypoints":
            summarize = _summarizeKps
        self.stats = summarize()

    def __str__(self):
        self.summarize()