/* --------------------------------- chapter -------------------------------- */
Example:
\chapter{Further implemented dynamical systems}
\label{ch_Ap_Dyna}

regex:
\\chapter\{(.*?)\}
\\label\{(.*?)\}

replace with:
# $1 {#sec-$2}

/* --------------------------------- section -------------------------------- */
search:
\\section\{(.*)\}
\\label\{(.*?)\}

replace:
## $1 {#sec-$2}

/* ------------------------------- subsection ------------------------------- */
search:
\\subsection\{(.*)\}
\\label\{(.*?)\}

replace:
### $1 {#sec-$2}

/* -------------------------------- sections -------------------------------- */
[-@sec{chapers, sections, subsections}] --> without Quatroos Chapters, sections, Subsection.. see: https://quarto.org/docs/authoring/cross-references.html

regex:
(@sec-[\w\d]+)

replace
[-$1]

/* ------------------------------ ref sections ------------------------------ */
syntax
## Introduction {#sec-introduction}
See @sec-introduction for additional context.

latex syntax:
\ref{subsec_1_1_1_Principles}

search
make search non greedy
\\ref\{(.*?)\}

replace:
@sec-$1

/* ------------------ ref fig,eq,chapter and more with dot ------------------ */
example:
@eq-eq_1_1_MPV. --> @eq-eq_1_1_MPV .

search:
@([\w+\d+\.-]+)\.

replace
@$1 .

/* ---------------------------- ref sections dot ---------------------------- */
@sec-(.*?)\.

@sec-$1 .
/* ----------------------------- boldsymbol math ---------------------------- */
\\bm
\boldsymbol

/* -------------------------- equation Equation jb -------------------------- */



/* ------------------------------- equations_0 ------------------------------ */
match all that do not start with $$ like:
$$
\begin{equation}
    F = \dot{\vec{x}}(t) = \frac{\vec{x}(t)}{dt} = f(\vec{x}(t))^
    \label{eq_1_0_DGL}
\end{equation}
$${#eq-eq_1_0_DGL_}

match like:
\begin{equation}
    \boldsymbol A_{3\times 3}\,(\vec{\beta}) = 
    \begin{bmatrix}
     \beta_{1,1} & \beta_{1,2} & \beta_{1,3}\\
      \beta_{2,1}  &\beta_{2,2} & \beta_{2,3}\\
      \beta_{3,1} & \beta_{3,2} &\beta_{3,3}
    \end{bmatrix}
    \label{eq_17_Dist_A}
  \end{equation}


serach:
^(?!\$\$)
(\\begin\{equation\}
(.|\n)*?\\label\{(.*?)\}(.|\n)*?\\end\{equation\})

replace with:
$$$$
$1
$$$$ {#eq-$3}


/* ---------------------------------- eqref --------------------------------- */
\\eqref\{(.*?)\}

replace:
@eq-$1


/* ------------------------------ math sings_0 ------------------------------ */


/* -------------------------------- bold word ------------------------------- */
\\textbf\{(.*?)\}

replace:
**$1**


/* ---------------------------------- tags ---------------------------------- */
repeat label see:
$$
\begin{equation}
    \boldsymbol {A_{i \mu}} \approx \boldsymbol A^{\prime}_{i \mu}  = (\boldsymbol W  \boldsymbol H)_{i \mu}  = \sum_{a = 1}^{r} 
    \boldsymbol W_{ia} \boldsymbol H_{a \mu}
\end{equation}
$$

2_Task/7_QT.md

/* --------------------------------- italic --------------------------------- */
\\emph\{(.*?)\}
*$1*

/* -------------------------------- comments -------------------------------- */
tripple comment
search for
(%.*)
(%.*)
(%.*)

<!-- $1 -->
<!-- $2 -->
<!-- $3 -->

single advanced comment, includes tripple comment
(^%.*|^\s%.*|^\s+%.*)
<!--$1-->

/* ---------------------------------- cite ---------------------------------- */
single cite
\\cite\{([\d\s\w:-]+)\}
[@$1]

double cite
find: 
\\cite\{([\d\s\w,]+)\}

replace manually --> see example 
[@Silva2020; @Kaptanoglu2022] 

regex abailites:
should not start with:[ --> negative look behind
should not coninue with: negative look ahead
(?<!\[)@(?!sec|eq)

/* ========================================================================== */
/* ================================= figures ================================ */
/* ========================================================================== */
/* ---------------------------------- fig 1 --------------------------------- */
\\begin\{figure\}\[.*\]
.*
\s+?\\includegraphics.*?\{(.*?)\}
\s+?\\caption\{(.*?)\}
\s+?\\label\{(.*?)\}
[\s+]?\\end\{figure\}

![$2](../../$1){#fig-$3}

/* ---------------------------------- fig 2 --------------------------------- */
fig Paths
../../2_Figures/(.*).pdf
../../3_Figs_Pyth/$1.svg

/* ------------------------------- fig naming ------------------------------- */
instead of @sec-fig_label get to fig-fig:Label
@sec-(fig.*?)\s

# make sure to add one spacing 
@fig-$1 

/* ------------------------ figure refering with dot ------------------------ */
exaomple:
depicted in figure @sec-fig_2_Lorenz_Example.\newline

search for:
@sec-(fig.*?)\.

replace with
@fig-$1 .

/* --------------------- minipages figures - be careful --------------------- */
\\begin\{figure\}\[.*?\]
\s+?\\begin\{minipage\}(\[.*?\])?.*
\s+?\\centering
\s+?\\includegraphics.*?\{(.*?)\}
\s+?\\caption.*?\{(.*?)\}
\s+?\\label.*?\{(.*?)\}.*?
\s+?\\end\{minipage\}.*?
\s+?\\hfill
\s+?\\begin\{minipage\}(\[.*?\])?.*
\s+?\\centering
\s+?\\includegraphics.*?\{(.*?)\}
\s+?\\caption.*?\{(.*?)\}
\s+?\\label.*?\{(.*?)\}.*?
\s+?\\end\{minipage\}.*?
(\s+)?\\end\{figure\}

replace with:
::: {layout-ncol=2}

![$3](../../$2){#fig-$4}

![$7](../../$6){#fig-$8}
:::


/* ------------------------------- subfigures ------------------------------- */
(\s+)?\\begin\{subfigure\}.*?
((\s+)?\\centering)?.*?
((\s+)?\\caption)\{(.*)\}.*?
\s+\\includegraphics.*?
\s+\{2_Figures/(.*?)\}
\s+\\label\{(.*?)\}.*?
\s+\\end\{subfigure\}

replace with:
\n![$6](../../3_Figs_Pyth/$7){#fig-$8}\n

next part:
\s+\\smallskip
\s+\\centering
\s+\\begin\{subfigure\}.*?
\s+\\caption\{(.*?)\}.*?
\s+\\includegraphics.*?\{2_Figures(.*?)\}
\s+\\label\{(.*?)\}.*?
\s+\\end\{subfigure\}.*?
\s+\\vspace\{.*?\}.*?
\s+\\caption\{(.)


/* ------------------------------- six figures ------------------------------ */
(\s+)?\\begin\{subfigure\}.*?
((\s+)?\\centering)?.*?
((\s+)?\\caption)\{(.*)\}.*?
\s+\\includegraphics.*?
\s+\{2_Figures/(.*?)\}
\s+\\end\{subfigure\}

replace:
\n![$6](../../3_Figs_Pyth/$7)\n

/* ------------------------------- subfigure_2 ------------------------------ */
(\s+)?\\begin\{subfigure\}.*?
((\s+)?\\centering)?.*?
((\s+)?\\caption)\{(.*)\}.*?
\s+\\includegraphics.*?\{2_Figures/(.*?)\}.*
.*?
\s+\\label\{(.*?)\}.*?
\s+\\end\{subfigure\}

replace with:
\n![$6](../../3_Figs_Pyth/$7){#fig-$8}\n

/* ------------------------------- subfigure_3 ------------------------------ */
(\s+)?\\begin\{subfigure\}.*?
((\s+)?\\centering)?.*?
((\s+)?\\caption)\{(.*)\}.*?
\s+\\includegraphics.*?\{2_Figures/(.*?)\}.*
.*?
\s+\\end\{subfigure\}

replace with:
\n![$6](../../3_Figs_Pyth/$7)\n