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shiyu1994 commited on
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8476273
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1 Parent(s): f1b92b6

add protein dataset

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Files changed (14) hide show
  1. Distributional-Graphormer/protein/{checkpoint-520k.pth → checkpoints/checkpoint-520k.pth} +0 -0
  2. Distributional-Graphormer/protein/dataset/1ake.fasta +2 -0
  3. Distributional-Graphormer/protein/dataset/1ake.pkl +3 -0
  4. Distributional-Graphormer/protein/dataset/1urp.fasta +2 -0
  5. Distributional-Graphormer/protein/dataset/1urp.pkl +3 -0
  6. Distributional-Graphormer/protein/dataset/2ahm.fasta +2 -0
  7. Distributional-Graphormer/protein/dataset/2ahm.pkl +3 -0
  8. Distributional-Graphormer/protein/dataset/3skc.fasta +2 -0
  9. Distributional-Graphormer/protein/dataset/3skc.pkl +3 -0
  10. Distributional-Graphormer/protein/dataset/6lu7.fasta +2 -0
  11. Distributional-Graphormer/protein/dataset/6lu7.pkl +3 -0
  12. Distributional-Graphormer/protein/dataset/6t1z.fasta +2 -0
  13. Distributional-Graphormer/protein/dataset/6t1z.pkl +3 -0
  14. Distributional-Graphormer/protein/dataset/protein-dataset.tar.gz +3 -0
Distributional-Graphormer/protein/{checkpoint-520k.pth → checkpoints/checkpoint-520k.pth} RENAMED
File without changes
Distributional-Graphormer/protein/dataset/1ake.fasta ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ >1ake Chains A, B|ADENYLATE KINASE|Escherichia coli (562)
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+ MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG
Distributional-Graphormer/protein/dataset/1ake.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:556a5ed11d6d59bf98543728ab28a9e01565170f23cb4e57fb48b95a158583ec
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+ size 23776505
Distributional-Graphormer/protein/dataset/1urp.fasta ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ >1urp Chains A, B, C, D|D-RIBOSE-BINDING PROTEIN|Escherichia coli K12 (83333)
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+ KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ
Distributional-Graphormer/protein/dataset/1urp.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:dcd52744cbf2509ac9c529bdb347eadc375e56c9701af265b8e85b6cf86c491f
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+ size 38018300
Distributional-Graphormer/protein/dataset/2ahm.fasta ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ >2ahm 6m0j_w_gly|Folding@home-2ahm|Folding@home-6m0j_w_gly
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+ TNLCPFGEVFLATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG
Distributional-Graphormer/protein/dataset/2ahm.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:921b59d6e361a743caf1fc28f7d777b645565ce24664993374897e478200f783
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+ size 19567865
Distributional-Graphormer/protein/dataset/3skc.fasta ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ >3skc 3skc_A and 3skc_B is off-state|6uan_C and 6uan_D is on state
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+ SEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPKIHR
Distributional-Graphormer/protein/dataset/3skc.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:c18cb9d38a5bb30946861c1fc6a8ad169d97f6c7a6b2e979cba7b600db109e87
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+ size 45010172
Distributional-Graphormer/protein/dataset/6lu7.fasta ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ >6lu7 6y2e|Folding@home-6lu7|Folding@home-6y2e
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+ SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Distributional-Graphormer/protein/dataset/6lu7.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:4e8379939065cb938ca7dd29691a54e2c0cb307e42424d0cc3a8e1bdc110787a
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+ size 48411900
Distributional-Graphormer/protein/dataset/6t1z.fasta ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ >6t1z Chain A|LmrP integral membrane protein|Lactococcus lactis (1358)
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+ GKEFWNLDKNLQLRLGIVFLGAFSYGTVFSSMTIYYNQYLGSAITGILLALSAVATFVAGILAGFFADRNGRKPVMVFGTIIQLLGAALAIASNLPGHVNPWSTFIAFLLISFGYNFVITAGNAMIIDASNAENRKVVFMLDYWAQNLSVILGAALGAWLFRPAFEALLVILLLTVLVSFFLTTFVMTETFKPTVKVDNIFQAYKTVLQDKTYMIFMGANIATTFIIMQFDNFLPVHLSNSFKTITFWGFEIYGQRMLTIYLILACVLVVLLMTTLNRLTKDWSHQKGFIWGSLFMAIGMIFSFLTTTFTPIFIAGIVYTLGEIVYTPSVQTLGADLMNPEKIGSYNGVAAIKMPIASILAGLLVSISPMIKAIGVSLVLALTEVLAIILVLVAVNRHQKTKLNLEVLFQG
Distributional-Graphormer/protein/dataset/6t1z.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:67589bde83e2cd7cf149a10e6c65267b45fcf7ed2a383c9b192c2c4e7ad83cc8
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+ size 87119100
Distributional-Graphormer/protein/dataset/protein-dataset.tar.gz ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:83a5386684a9a57206865b36da743c9dc2c038b022a91a1c124e95f4f630ea6a
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