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del_model/config.json

@@ -1,5 +1,4 @@
 {
-  "_name_or_path": "/home/ljw/sdc1/CRISPR_results/Lindel/SX_spcas9_Lindel_del",
   "architectures": [
     "LindelModel"
   ],

del_model/model.py

@@ -35,13 +35,16 @@ class LindelModel(PreTrainedModel):
         self.reg_mode = config.reg_mode
         self.reg_const = config.reg_const
         if config.model == "indel":
+            # onehotencoder(ref[cut-17:cut+3])
             feature_dim = 20 * 4 + 19 * 16
             class_dim = 2
         elif config.model == "ins":
+            # onehotencoder(ref[cut-3:cut+3])
             feature_dim = 6 * 4 + 5 * 16
             class_dim = 21
         elif config.model == "del":
             class_dim = (4 + 1 + 4 + config.dlen - 1) * (config.dlen - 1) // 2
+            # concatenate get_feature and onehotencoder(ref[cut-17:cut+3])
             feature_dim = class_dim * (config.mh_len + 1) + 20 * 4 + 19 * 16
         self.linear = nn.Linear(in_features=feature_dim, out_features=class_dim)
         self.initialize_weights()

del_model/runs/Oct28_11-56-12_ljw-System-Product-Name/events.out.tfevents.1730089618.ljw-System-Product-Name.78325.2

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a37ce0dddba65b512a012df13456b11aa4ea45a455673c9ca4d82e8e0354eae4
+size 19399

del_model/training_args.bin

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:8895d7b66ec05ca687db7d5fca663ef08078c7efdefb0610fcfd4e798228e643
+oid sha256:1a192fcff5cbab26e3e72f8ab6b025c0fff02741b1fbcbd4a51c4125f2c691ee
 size 5304