Hugo Symbol Entrez Gene ID GRCh37 Isoform GRCh37 RefSeq GRCh38 Isoform GRCh38 RefSeq Is Oncogene Is Tumor Suppressor Gene # of occurrence within resources (Column J-P) OncoKB Annotated MSK-IMPACT MSK-HEME FOUNDATION ONE FOUNDATION ONE HEME Vogelstein COSMIC CGC (v99) Gene Aliases ABL1 25 ENST00000318560 NM_005157.4 ENST00000318560 NM_005157.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes ABL, JTK7, c-ABL AKT1 207 ENST00000349310 NM_001014431.1 ENST00000349310 NM_001014431.1 Yes No 7 Yes Yes Yes Yes Yes Yes Yes AKT, PKB, PRKBA, RAC, RAC-alpha ALK 238 ENST00000389048 NM_004304.4 ENST00000389048 NM_004304.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes CD246 AMER1 139285 ENST00000330258 NM_152424.3 ENST00000374869 NM_152424.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes FAM123B, FLJ39827, RP11-403E24.2, WTX APC 324 ENST00000257430 NM_000038.5 ENST00000257430 NM_000038.5 No Yes 7 Yes Yes Yes Yes Yes Yes Yes DP2.5, PPP1R46 AR 367 ENST00000374690 NM_000044.3 ENST00000374690 NM_000044.3 Yes No 7 Yes Yes Yes Yes Yes Yes Yes AIS, DHTR, HUMARA, NR3C4, SBMA, SMAX1 ARID1A 8289 ENST00000324856 NM_006015.4 ENST00000324856 NM_006015.4 No Yes 7 Yes Yes Yes Yes Yes Yes Yes B120, BAF250, BAF250a, C10rf4, C1orf4, P270, SMARCF1 ASXL1 171023 ENST00000375687 NM_015338.5 ENST00000375687 NM_015338.5 No Yes 7 Yes Yes Yes Yes Yes Yes Yes KIAA0978 ATM 472 ENST00000278616 NM_000051.3 ENST00000278616 NM_000051.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes ATA, ATC, ATD, ATDC, TEL1, TELO1 ATRX 546 ENST00000373344 NM_000489.3 ENST00000373344 NM_000489.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes JMS, MRX52, RAD54, XH2, XNP AXIN1 8312 ENST00000262320 NM_003502.3 ENST00000262320 NM_003502.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes PPP1R49 BAP1 8314 ENST00000460680 NM_004656.3 ENST00000460680 NM_004656.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes KIAA0272, UCHL2, hucep-6 BCL2 596 ENST00000333681 NM_000633.2 ENST00000333681 NM_000633.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes Bcl-2, PPP1R50 BCOR 54880 ENST00000378444 NM_001123385.1 ENST00000378444 NM_001123385.1 No Yes 7 Yes Yes Yes Yes Yes Yes Yes FLJ20285, KIAA1575 BRAF 673 ENST00000288602 NM_004333.4 ENST00000646891 NM_004333.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes BRAF1 BRCA1 672 ENST00000357654 NM_007294.3 ENST00000357654 NM_007294.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes FANCS, PPP1R53, RNF53 BRCA2 675 ENST00000380152 NM_000059.3 ENST00000380152 NM_000059.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes FAD1, FANCD1, XRCC11 CARD11 84433 ENST00000396946 NM_032415.4 ENST00000396946 NM_032415.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes BIMP3, CARMA1 CBL 867 ENST00000264033 NM_005188.3 ENST00000264033 NM_005188.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes CBL2, RNF55, c-Cbl CDC73 79577 ENST00000367435 NM_024529.4 ENST00000367435 NM_024529.4 No Yes 7 Yes Yes Yes Yes Yes Yes Yes C1orf28, FIHP, HRPT1, HRPT2, parafibromin CDH1 999 ENST00000261769 NM_004360.3 ENST00000261769 NM_004360.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes CD324, UVO, uvomorulin CDKN2A 1029 ENST00000304494 NM_000077.4 ENST00000304494 NM_000077.4 No Yes 7 Yes Yes Yes Yes Yes Yes Yes ARF, CDKN2, CMM2, INK4, INK4a, MLM, p14, p14ARF, p16, p16INK4a, p19Arf CEBPA 1050 ENST00000498907 NM_004364.3 ENST00000498907 NM_004364.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes C/EBP-alpha, CEBP CIC 23152 ENST00000575354 NM_015125.3 ENST00000575354 NM_015125.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes KIAA0306 CREBBP 1387 ENST00000262367 NM_004380.2 ENST00000262367 NM_004380.2 No Yes 7 Yes Yes Yes Yes Yes Yes Yes KAT3A, RSTS, RTS CTNNB1 1499 ENST00000349496 NM_001904.3 ENST00000349496 NM_001904.3 Yes No 7 Yes Yes Yes Yes Yes Yes Yes CTNNB, armadillo, beta-catenin DAXX 1616 ENST00000374542 NM_001141970.1 ENST00000266000 NM_001141970.1 No Yes 7 Yes Yes Yes Yes Yes Yes Yes DAP6 DNMT3A 1788 ENST00000264709 NM_022552.4 ENST00000264709 NM_022552.4 No Yes 7 Yes Yes Yes Yes Yes Yes Yes EGFR 1956 ENST00000275493 NM_005228.3 ENST00000275493 NM_005228.3 Yes No 7 Yes Yes Yes Yes Yes Yes Yes ERBB, ERBB1, ERRP EP300 2033 ENST00000263253 NM_001429.3 ENST00000263253 NM_001429.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes KAT3B, p300 ERBB2 2064 ENST00000269571 NM_004448.2 ENST00000269571 NM_004448.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes CD340, HER-2, HER2, NGL EZH2 2146 ENST00000320356 NM_004456.4 ENST00000320356 NM_004456.4 Yes Yes 7 Yes Yes Yes Yes Yes Yes Yes ENX-1, KMT6, KMT6A FBXW7 55294 ENST00000281708 NM_033632.3 ENST00000281708 NM_033632.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes AGO, CDC4, FBW7, FBX30, FBXW6, FLJ11071, SEL-10, SEL10 FGFR2 2263 ENST00000358487 NM_000141.4 ENST00000358487 NM_000141.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes BEK, CD332, CEK3, CFD1, ECT1, JWS, K-SAM, KGFR, TK14, TK25 FGFR3 2261 ENST00000260795 NM_000142.4 ENST00000440486 NM_000142.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes ACH, CD333, CEK2, JTK4 FLT3 2322 ENST00000241453 NM_004119.2 ENST00000241453 NM_004119.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes CD135, FLK2, STK1 FOXL2 668 ENST00000330315 NM_023067.3 ENST00000648323 NM_023067.3 Yes Yes 7 Yes Yes Yes Yes Yes Yes Yes BPES, BPES1 GATA3 2625 ENST00000346208 NM_002051.2 ENST00000346208 NM_002051.2 Yes Yes 7 Yes Yes Yes Yes Yes Yes Yes HDR GNA11 2767 ENST00000078429 NM_002067.2 ENST00000078429 NM_002067.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes FBH, FBH2, FHH2, HHC2 GNAQ 2776 ENST00000286548 NM_002072.3 ENST00000286548 NM_002072.3 Yes No 7 Yes Yes Yes Yes Yes Yes Yes G-ALPHA-q, GAQ GNAS 2778 ENST00000371085 NM_000516.4 ENST00000371085 NM_000516.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes GNAS1, GNASXL, GPSA, NESP, NESP55, SCG6, SgVI HNF1A 6927 ENST00000257555 NM_000545.5 ENST00000257555 NM_000545.5 No Yes 7 Yes Yes Yes Yes Yes Yes Yes HNF1, LFB1, MODY3, TCF1 HRAS 3265 ENST00000451590 NM_005343.2 ENST00000451590 NM_005343.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes HRAS1 IDH1 3417 ENST00000345146 NM_005896.2 ENST00000345146 NM_005896.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes IDH2 3418 ENST00000330062 NM_002168.2 ENST00000330062 NM_002168.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes JAK1 3716 ENST00000342505 NM_002227.2 ENST00000342505 NM_002227.2 Yes Yes 7 Yes Yes Yes Yes Yes Yes Yes JAK1A, JAK1B, JTK3 JAK2 3717 ENST00000381652 NM_004972.3 ENST00000381652 NM_004972.3 Yes No 7 Yes Yes Yes Yes Yes Yes Yes JTK10 JAK3 3718 ENST00000458235 NM_000215.3 ENST00000458235 NM_000215.3 Yes No 7 Yes Yes Yes Yes Yes Yes Yes JAK-3, JAK3_HUMAN, JAKL, L-JAK, LJAK KDM5C 8242 ENST00000375401 NM_004187.3 ENST00000375401 NM_004187.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes DXS1272E, JARID1C, MRX13, SMCX, XE169 KDM6A 7403 ENST00000377967 NM_021140.2 ENST00000377967 NM_021140.2 No Yes 7 Yes Yes Yes Yes Yes Yes Yes UTX KIT 3815 ENST00000288135 NM_000222.2 ENST00000288135 NM_000222.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes C-Kit, CD117, PBT, SCFR KMT2D 8085 ENST00000301067 NM_003482.3 ENST00000301067 NM_003482.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes ALR, CAGL114, MLL2, TNRC21 KRAS 3845 ENST00000311936 NM_004985.3 ENST00000311936 NM_004985.3 Yes No 7 Yes Yes Yes Yes Yes Yes Yes K-Ras4B, KRAS1, KRAS2 MAP2K1 5604 ENST00000307102 NM_002755.3 ENST00000307102 NM_002755.3 Yes No 7 Yes Yes Yes Yes Yes Yes Yes MAPKK1, MEK1, PRKMK1 MAP3K1 4214 ENST00000399503 NM_005921.1 ENST00000399503 NM_005921.1 No Yes 7 Yes Yes Yes Yes Yes Yes Yes MAPKKK1, MEKK, MEKK1 MED12 9968 ENST00000374080 NM_005120.2 ENST00000374080 NM_005120.2 Yes Yes 7 Yes Yes Yes Yes Yes Yes Yes ARC240, CAGH45, FGS1, HOPA, KIAA0192, Kto, OKS, TNRC11, TRAP230 MEN1 4221 ENST00000312049 NM_130799.2 ENST00000312049 NM_130799.2 No Yes 7 Yes Yes Yes Yes Yes Yes Yes MET 4233 ENST00000397752 NM_000245.2 ENST00000397752 NM_000245.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes DFNB97, HGFR, RCCP2 MLH1 4292 ENST00000231790 NM_000249.3 ENST00000231790 NM_000249.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes COCA2, FCC2, HNPCC, HNPCC2 MPL 4352 ENST00000372470 NM_005373.2 ENST00000372470 NM_005373.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes CD110, THPOR, TPOR MSH2 4436 ENST00000233146 NM_000251.2 ENST00000233146 NM_000251.2 No Yes 7 Yes Yes Yes Yes Yes Yes Yes COCA1, HNPCC1 MSH6 2956 ENST00000234420 NM_000179.2 ENST00000234420 NM_000179.2 No Yes 7 Yes Yes Yes Yes Yes Yes Yes GTBP MYD88 4615 ENST00000396334 NM_002468.4 ENST00000396334 NM_002468.5 Yes No 7 Yes Yes Yes Yes Yes Yes Yes NF1 4763 ENST00000356175 NM_000267.3 ENST00000356175 NM_000267.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes NF2 4771 ENST00000338641 NM_000268.3 ENST00000338641 NM_000268.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes ACN, BANF, SCH, merlin, merlin-1 NFE2L2 4780 ENST00000397062 NM_006164.4 ENST00000397062 NM_006164.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes NOTCH1 4851 ENST00000277541 NM_017617.3 ENST00000651671 NM_017617.5 Yes Yes 7 Yes Yes Yes Yes Yes Yes Yes TAN1 NOTCH2 4853 ENST00000256646 NM_024408.3 ENST00000256646 NM_024408.3 Yes Yes 7 Yes Yes Yes Yes Yes Yes Yes NPM1 4869 ENST00000296930 NM_002520.6 ENST00000296930 NM_002520.6 No Yes 7 Yes Yes Yes Yes Yes Yes Yes B23, NPM NRAS 4893 ENST00000369535 NM_002524.4 ENST00000369535 NM_002524.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes N-ras PAX5 5079 ENST00000358127 NM_016734.2 ENST00000358127 NM_016734.2 Yes Yes 7 Yes Yes Yes Yes Yes Yes Yes BSAP PBRM1 55193 ENST00000394830 NM_018313.4 ENST00000394830 NM_018313.4 No Yes 7 Yes Yes Yes Yes Yes Yes Yes BAF180, PB1 PDGFRA 5156 ENST00000257290 NM_006206.4 ENST00000257290 NM_006206.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes CD140a, GAS9, PDGFR2 PIK3CA 5290 ENST00000263967 NM_006218.2 ENST00000263967 NM_006218.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes PI3K PIK3R1 5295 ENST00000274335 NM_181523.2 ENST00000521381 NM_181523.2 No Yes 7 Yes Yes Yes Yes Yes Yes Yes GRB1, p85-ALPHA PPP2R1A 5518 ENST00000322088 NM_014225.5 ENST00000322088 NM_014225.5 No Yes 7 Yes Yes Yes Yes Yes Yes Yes PP2A-Aalpha, PP2AA, PR65A PRDM1 639 ENST00000369096 NM_001198.3 ENST00000369096 NM_001198.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes BLIMP1, PRDI-BF1 PTCH1 5727 ENST00000331920 NM_000264.3 ENST00000331920 NM_000264.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes BCNS, NBCCS, PTCH PTEN 5728 ENST00000371953 NM_000314.4 ENST00000371953 NM_000314.4 No Yes 7 Yes Yes Yes Yes Yes Yes Yes BZS, MHAM, MMAC1, PTEN1 PTPN11 5781 ENST00000351677 NM_002834.3 ENST00000351677 NM_002834.3 Yes No 7 Yes Yes Yes Yes Yes Yes Yes BPTP3, NS1, PTP2C, SH-PTP2, SHP-2, SHP2 RB1 5925 ENST00000267163 NM_000321.2 ENST00000267163 NM_000321.2 No Yes 7 Yes Yes Yes Yes Yes Yes Yes OSRC, PPP1R130, RB RET 5979 ENST00000355710 NM_020975.4 ENST00000355710 NM_020975.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes CDHF12, CDHR16, HSCR1, MEN2A, MEN2B, MTC1, RET51 RNF43 54894 ENST00000407977 NM_017763.4 ENST00000407977 NM_017763.4 No Yes 7 Yes Yes Yes Yes Yes Yes Yes DKFZp781H0392, FLJ20315, URCC SETD2 29072 ENST00000409792 NM_014159.6 ENST00000409792 NM_014159.6 No Yes 7 Yes Yes Yes Yes Yes Yes Yes FLJ23184, HIF-1, HYPB, KIAA1732, KMT3A SF3B1 23451 ENST00000335508 NM_012433.2 ENST00000335508 NM_012433.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes Hsh155, PRPF10, Prp10, SAP155, SF3b155 SMAD2 4087 ENST00000262160 NM_001003652.3 ENST00000262160 NM_001003652.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes JV18-1, MADH2, MADR2 SMAD4 4089 ENST00000342988 NM_005359.5 ENST00000342988 NM_005359.5 No Yes 7 Yes Yes Yes Yes Yes Yes Yes DPC4, MADH4 SMARCA4 6597 ENST00000358026 NM_001128849.1 ENST00000646693 NM_001128849.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes BRG1, FLJ39786, SNF2-BETA, SNF2L4, hSNF2b SMARCB1 6598 ENST00000263121 NM_003073.3 ENST00000618915 NM_003073.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes BAF47, Ini1, PPP1R144, RDT, SNF5, SNF5L1, Sfh1p, Snr1, hSNFS SMO 6608 ENST00000249373 NM_005631.4 ENST00000249373 NM_005631.4 Yes No 7 Yes Yes Yes Yes Yes Yes Yes FZD11, SMOH SOCS1 8651 ENST00000332029 NM_003745.1 ENST00000332029 NM_003745.1 No Yes 7 Yes Yes Yes Yes Yes Yes Yes Cish1, JAB, SOCS-1, SSI-1, TIP3 SPOP 8405 ENST00000347630 NM_001007228.1 ENST00000347630 NM_001007228.1 No Yes 7 Yes Yes Yes Yes Yes Yes Yes BTBD32, TEF2 STAG2 10735 ENST00000218089 NM_001042749.1 ENST00000218089 NM_001042749.1 No Yes 7 Yes Yes Yes Yes Yes Yes Yes SA-2, SA2, SCC3B STK11 6794 ENST00000326873 NM_000455.4 ENST00000326873 NM_000455.4 No Yes 7 Yes Yes Yes Yes Yes Yes Yes LKB1, PJS TET2 54790 ENST00000380013 NM_001127208.2 ENST00000380013 NM_001127208.2 No Yes 7 Yes Yes Yes Yes Yes Yes Yes FLJ20032, KIAA1546 TNFAIP3 7128 ENST00000237289 NM_006290.3 ENST00000237289 NM_006290.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes A20, OTUD7C TP53 7157 ENST00000269305 NM_000546.5 ENST00000269305 NM_000546.5 No Yes 7 Yes Yes Yes Yes Yes Yes Yes LFS1, p53 TSC1 7248 ENST00000298552 NM_000368.4 ENST00000298552 NM_000368.4 No Yes 7 Yes Yes Yes Yes Yes Yes Yes KIAA0243, TSC, hamartin U2AF1 7307 ENST00000291552 NM_006758.2 ENST00000291552 NM_006758.2 Yes No 7 Yes Yes Yes Yes Yes Yes Yes RNU2AF1, U2AF35, U2AFBP VHL 7428 ENST00000256474 NM_000551.3 ENST00000256474 NM_000551.3 No Yes 7 Yes Yes Yes Yes Yes Yes Yes VHL1 WT1 7490 ENST00000332351 NM_024426.4 ENST00000452863 NM_024426.4 Yes Yes 7 Yes Yes Yes Yes Yes Yes Yes AWT1, GUD, NPHS4, WAGR, WIT-2 AKT2 208 ENST00000392038 NM_001626.4 ENST00000392038 NM_001626.4 Yes No 6 Yes Yes Yes Yes Yes No Yes PKBβ ARID2 196528 ENST00000334344 NM_152641.2 ENST00000334344 NM_152641.2 No Yes 6 Yes Yes Yes No Yes Yes Yes BAF200, DKFZp686G052, FLJ30619, KIAA1557 ATR 545 ENST00000350721 NM_001184.3 ENST00000350721 NM_001184.3 No Yes 6 Yes Yes Yes Yes Yes No Yes FRP1, MEC1, SCKL, SCKL1 B2M 567 ENST00000558401 NM_004048.2 ENST00000559916 NM_004048.2 No Yes 6 Yes Yes Yes No Yes Yes Yes BARD1 580 ENST00000260947 NM_000465.2 ENST00000260947 NM_000465.2 No Yes 6 Yes Yes Yes Yes Yes No Yes BCL6 604 ENST00000232014 NM_001706.4 ENST00000232014 NM_001706.4 Yes No 6 Yes Yes Yes Yes Yes No Yes BCL5, BCL6A, LAZ3, ZBTB27, ZNF51 BRD4 23476 ENST00000263377 NM_058243.2 ENST00000263377 NM_058243.2 Yes No 6 Yes Yes Yes Yes Yes No Yes HUNK1, HUNKI, MCAP BRIP1 83990 ENST00000259008 NM_032043.2 ENST00000259008 NM_032043.2 No Yes 6 Yes Yes Yes Yes Yes No Yes FANCJ BTK 695 ENST00000308731 NM_000061.2 ENST00000308731 NM_000061.2 Yes No 6 Yes Yes Yes Yes Yes No Yes AGMX1, ATK, IMD1, PSCTK1, XLA CALR 811 ENST00000316448 NM_004343.3 ENST00000316448 NM_004343.3 Yes No 6 Yes Yes Yes Yes Yes No Yes CRT, FLJ26680, RO, SSA, cC1qR CASP8 841 ENST00000358485 NM_001080125.1 ENST00000358485 NM_001080125.1 No Yes 6 Yes Yes Yes Yes No Yes Yes Casp-8, FLICE, MACH, MCH5 CBFB 865 ENST00000412916 NM_022845.2 ENST00000412916 NM_022845.2 No Yes 6 Yes Yes Yes Yes Yes No Yes PEBP2B CCND1 595 ENST00000227507 NM_053056.2 ENST00000227507 NM_053056.2 Yes No 6 Yes Yes Yes Yes Yes No Yes BCL1, D11S287E, PRAD1, U21B31 CCND2 894 ENST00000261254 NM_001759.3 ENST00000261254 NM_001759.3 Yes No 6 Yes Yes Yes Yes Yes No Yes CCND3 896 ENST00000372991 NM_001760.3 ENST00000372991 NM_001760.3 Yes No 6 Yes Yes Yes Yes Yes No Yes CCNE1 898 ENST00000262643 NM_001238.2 ENST00000262643 NM_001238.2 Yes No 6 Yes Yes Yes Yes Yes No Yes CCNE CD274 29126 ENST00000381577 NM_014143.3 ENST00000381577 NM_014143.3 Yes No 6 Yes Yes Yes Yes Yes No Yes B7-H, B7-H1, B7H1, PD-L1, PDCD1LG1, PDL1 CD79A 973 ENST00000221972 NM_001783.3 ENST00000221972 NM_001783.3 Yes No 6 Yes Yes Yes Yes Yes No Yes IGA, MB-1 CD79B 974 ENST00000392795 NM_001039933.1 ENST00000392795 NM_001039933.1 Yes No 6 Yes Yes Yes Yes Yes No Yes B29, IGB CDK12 51755 ENST00000447079 NM_016507.2 ENST00000447079 NM_016507.2 No Yes 6 Yes Yes Yes Yes Yes No Yes CRK7, CRKR, CRKRS, KIAA0904 CDK4 1019 ENST00000257904 NM_000075.3 ENST00000257904 NM_000075.3 Yes No 6 Yes Yes Yes Yes Yes No Yes PSK-J3 CDK6 1021 ENST00000265734 NM_001145306.1 ENST00000265734 NM_001145306.1 Yes No 6 Yes Yes Yes Yes Yes No Yes PLSTIRE CDKN1B 1027 ENST00000228872 NM_004064.3 ENST00000228872 NM_004064.3 No Yes 6 Yes Yes Yes Yes Yes No Yes KIP1, P27KIP1 CDKN2C 1031 ENST00000262662 NM_078626.2 ENST00000262662 NM_078626.2 No Yes 6 Yes Yes Yes Yes Yes No Yes INK4C CHEK2 11200 ENST00000328354 NM_007194.3 ENST00000404276 NM_007194.3 No Yes 6 Yes Yes Yes Yes Yes No Yes CHK2, HuCds1, PP1425, RAD53, bA444G7 CRLF2 64109 ENST00000381566 NM_022148.2 ENST00000381566 NM_022148.4 Yes No 6 Yes Yes Yes No Yes Yes Yes CRL2, TSLPR CSF1R 1436 ENST00000286301 NM_005211.3 ENST00000286301 NM_005211.3 No No 6 Yes Yes Yes Yes Yes Yes No C-FMS, CD115, CSFR, FMS CSF3R 1441 ENST00000361632 NM_000760.3 ENST00000361632 NM_000760.3 Yes No 6 Yes Yes Yes Yes Yes No Yes CD114, GCSFR CTCF 10664 ENST00000264010 NM_006565.3 ENST00000264010 NM_006565.3 No Yes 6 Yes Yes Yes Yes Yes No Yes CFAP108, FAP108 CXCR4 7852 ENST00000241393 NM_003467.2 ENST00000241393 NM_003467.2 Yes No 6 Yes Yes Yes Yes Yes No Yes CD184, D2S201E, HM89, HSY3RR, LESTR, NPY3R, NPYY3R, fusin DDR2 4921 ENST00000367921 NM_006182.2 ENST00000367921 NM_006182.2 Yes No 6 Yes Yes Yes Yes Yes No Yes NTRKR3, TYRO10 ERBB3 2065 ENST00000267101 NM_001982.3 ENST00000267101 NM_001982.3 Yes No 6 Yes Yes Yes Yes Yes No Yes HER3, LCCS2 ERBB4 2066 ENST00000342788 NM_005235.2 ENST00000342788 NM_005235.2 Yes No 6 Yes Yes Yes Yes Yes No Yes ALS19, HER4 ERG 2078 ENST00000288319 NM_182918.3 ENST00000288319 NM_182918.3 Yes No 6 Yes Yes Yes Yes Yes No Yes erg-3 ESR1 2099 ENST00000206249 NM_001122740.1 ENST00000206249 NM_001122740.1 Yes No 6 Yes Yes Yes Yes Yes No Yes ER-alpha, ESR, Era, NR3A1 ETV6 2120 ENST00000396373 NM_001987.4 ENST00000396373 NM_001987.4 No Yes 6 Yes Yes Yes Yes Yes No Yes TEL FANCA 2175 ENST00000389301 NM_000135.2 ENST00000389301 NM_000135.2 No Yes 6 Yes Yes Yes Yes Yes No Yes FA-H, FAA, FACA, FANCH FANCC 2176 ENST00000289081 NM_000136.2 ENST00000289081 NM_000136.2 No Yes 6 Yes Yes Yes Yes Yes No Yes FA3, FAC, FACC FGFR1 2260 ENST00000425967 NM_001174067.1 ENST00000425967 NM_001174067.1 Yes No 6 Yes Yes Yes Yes Yes No Yes BFGFR, CD331, CEK, FLT2, H5, KAL2, N-SAM FGFR4 2264 ENST00000292408 NM_213647.1 ENST00000292408 NM_213647.1 Yes No 6 Yes Yes Yes Yes Yes No Yes CD334, JTK2 FLCN 201163 ENST00000285071 NM_144997.5 ENST00000285071 NM_144997.5 No Yes 6 Yes Yes Yes Yes Yes No Yes BHD, DENND8B, MGC17998, MGC23445 FUBP1 8880 ENST00000370768 NM_003902.3 ENST00000370768 NM_003902.3 No Yes 6 Yes Yes Yes Yes No Yes Yes FUBP GATA1 2623 ENST00000376670 NM_002049.3 ENST00000376670 NM_002049.3 No No 6 Yes Yes Yes No Yes Yes Yes ERYF1, GATA-1, GF1, NF-E1, NFE1 GATA2 2624 ENST00000341105 NM_032638.4 ENST00000341105 NM_032638.4 Yes Yes 6 Yes Yes Yes No Yes Yes Yes NFE1B H3-3A 3020 ENST00000366813 NM_002107.4 ENST00000366815 NM_002107.4 Yes No 6 Yes Yes Yes Yes No Yes Yes H3.3A, H3F3, H3F3A H3C2 8358 ENST00000244661 NM_003537.3 ENST00000621411 NM_003537.3 No No 6 Yes Yes Yes No Yes Yes Yes H3/l, H3FL, HIST1H3B HGF 3082 ENST00000222390 NM_000601.4 ENST00000222390 NM_000601.4 Yes No 6 Yes Yes Yes Yes Yes No Yes DFNB39, F-TCF, HGFB, HPTA IKZF1 10320 ENST00000331340 NM_006060.4 ENST00000331340 NM_006060.6 No No 6 Yes Yes Yes Yes Yes No Yes Hs.54452, IKAROS, LyF-1, PPP1R92, ZNFN1A1, hIk-1 IRF4 3662 ENST00000380956 NM_002460.3 ENST00000380956 NM_002460.3 Yes No 6 Yes Yes Yes Yes Yes No Yes LSIRF, MUM1 JUN 3725 ENST00000371222 NM_002228.3 ENST00000371222 NM_002228.3 Yes No 6 Yes Yes Yes Yes Yes No Yes AP-1, c-Jun KDM5A 5927 ENST00000399788 NM_001042603.1 ENST00000399788 NM_001042603.1 Yes No 6 Yes Yes Yes Yes Yes No Yes JARID1A, RBBP2 KDR 3791 ENST00000263923 NM_002253.2 ENST00000263923 NM_002253.2 Yes No 6 Yes Yes Yes Yes Yes No Yes CD309, FLK1, VEGFR, VEGFR2 KEAP1 9817 ENST00000171111 NM_203500.1 ENST00000171111 NM_203500.1 No Yes 6 Yes Yes Yes Yes Yes No Yes INrf2, KIAA0132, KLHL19, MGC10630, MGC1114, MGC20887, MGC4407, MGC9454 KMT2A 4297 ENST00000534358 NM_001197104.1 ENST00000534358 NM_001197104.1 No Yes 6 Yes Yes Yes Yes Yes No Yes ALL-1, CXXC7, HRX, HTRX1, MLL, MLL1A, TRX1 KMT2C 58508 ENST00000262189 NM_170606.2 ENST00000262189 NM_170606.2 No Yes 6 Yes Yes Yes No Yes Yes Yes HALR, KIAA1506, MLL3 MAP2K2 5605 ENST00000262948 NM_030662.3 ENST00000262948 NM_030662.3 Yes No 6 Yes Yes Yes Yes Yes No Yes MEK2, PRKMK2 MAP2K4 6416 ENST00000353533 NM_003010.3 ENST00000353533 NM_003010.3 No Yes 6 Yes Yes Yes Yes Yes No Yes JNKK1, MEK4, MKK4, PRKMK4, SERK1 MAPK1 5594 ENST00000215832 NM_002745.4 ENST00000215832 NM_002745.4 Yes No 6 Yes Yes Yes Yes Yes No Yes ERK2, MAPK2, PRKM1, PRKM2, p41mapk MDM2 4193 ENST00000462284 NM_002392.5 ENST00000258149 NM_002392.5 Yes No 6 Yes Yes Yes Yes Yes No Yes HDM2, MGC5370 MDM4 4194 ENST00000367182 NM_002393.4 ENST00000367182 NM_002393.4 Yes No 6 Yes Yes Yes Yes Yes No Yes HDMX, MDMX MITF 4286 ENST00000394351 NM_000248.3 ENST00000394351 NM_000248.4 Yes Yes 6 Yes Yes Yes Yes Yes No Yes MI, WS2, WS2A, bHLHe32 MTOR 2475 ENST00000361445 NM_004958.3 ENST00000361445 NM_004958.3 Yes No 6 Yes Yes Yes Yes Yes No Yes FLJ44809, FRAP, FRAP1, FRAP2, RAFT1, RAPT1 MUTYH 4595 ENST00000372115 NM_001048171.1 ENST00000372115 NM_001048171.1 No Yes 6 Yes Yes Yes Yes Yes No Yes MYH MYC 4609 ENST00000377970 NM_002467.4 ENST00000621592 NM_002467.4 Yes No 6 Yes Yes Yes Yes Yes No Yes MYCC, bHLHe39, c-Myc MYCL 4610 ENST00000397332 NM_001033082.2 ENST00000397332 NM_001033082.2 Yes No 6 Yes Yes Yes Yes Yes No Yes LMYC, MYCL1, bHLHe38 MYCN 4613 ENST00000281043 NM_005378.4 ENST00000281043 NM_005378.4 Yes No 6 Yes Yes Yes Yes Yes No Yes MYCNOT, N-myc, NMYC, bHLHe37 NKX2-1 7080 ENST00000354822 NM_001079668.2 ENST00000354822 NM_001079668.2 Yes No 6 Yes Yes Yes Yes Yes No Yes BCH, NKX2A, TITF1, TTF-1 NSD2 7468 ENST00000382891 NM_001042424.2 ENST00000382891 NM_001042424.2 Yes No 6 Yes Yes Yes Yes Yes No Yes KMT3G, MMSET, WHSC1 NSD3 54904 ENST00000317025 NM_023034.1 ENST00000317025 NM_023034.1 No No 6 Yes Yes Yes Yes Yes No Yes FLJ20353, KMT3F, WHISTLE, WHSC1L1 NTRK1 4914 ENST00000524377 NM_002529.3 ENST00000524377 NM_002529.3 Yes No 6 Yes Yes Yes Yes Yes No Yes MTC, TRKA NTRK2 4915 ENST00000277120 NM_006180.3 ENST00000277120 NM_006180.3 Yes No 6 Yes Yes Yes Yes Yes No Yes TRKB NTRK3 4916 ENST00000360948 NM_001012338.2 ENST00000360948 NM_001012338.2 Yes No 6 Yes Yes Yes Yes Yes No Yes TRKC PALB2 79728 ENST00000261584 NM_024675.3 ENST00000261584 NM_024675.3 No Yes 6 Yes Yes Yes Yes Yes No Yes FANCN, FLJ21816 PDCD1LG2 80380 ENST00000397747 NM_025239.3 ENST00000397747 NM_025239.3 Yes No 6 Yes Yes Yes Yes Yes No Yes B7-DC, Btdc, CD273, PD-L2, PDL2, bA574F11.2 PDGFRB 5159 ENST00000261799 NM_002609.3 ENST00000261799 NM_002609.3 Yes No 6 Yes Yes Yes Yes Yes No Yes CD140b, JTK12, PDGFR, PDGFR1 PHF6 84295 ENST00000332070 NM_001015877.1 ENST00000332070 NM_001015877.1 No Yes 6 Yes Yes Yes No Yes Yes Yes BFLS, BORJ, CENP-31, KIAA1823, MGC14797 PIM1 5292 ENST00000373509 NM_002648.3 ENST00000373509 NM_002648.3 No No 6 Yes Yes Yes Yes Yes No Yes PIM PRKAR1A 5573 ENST00000358598 NM_212471.2 ENST00000358598 NM_212471.2 No Yes 6 Yes Yes Yes Yes Yes No Yes CNC1, PRKAR1, TSE1 RAD21 5885 ENST00000297338 NM_006265.2 ENST00000297338 NM_006265.2 No Yes 6 Yes Yes Yes Yes Yes No Yes KIAA0078, SCC1, hHR21 RAF1 5894 ENST00000251849 NM_002880.3 ENST00000251849 NM_002880.3 Yes No 6 Yes Yes Yes Yes Yes No Yes CRAF, Raf-1, c-Raf RARA 5914 ENST00000254066 NM_000964.3 ENST00000254066 NM_000964.3 No No 6 Yes Yes Yes Yes Yes No Yes NR1B1 ROS1 6098 ENST00000368508 NM_002944.2 ENST00000368508 NM_002944.2 Yes No 6 Yes Yes Yes Yes Yes No Yes MCF3, ROS, c-ros-1 RUNX1 861 ENST00000300305 NM_001754.4 ENST00000300305 NM_001754.4 No Yes 6 Yes Yes Yes No Yes Yes Yes AML1, AMLCR1, CBFA2, PEBP2A2 SDHA 6389 ENST00000264932 NM_004168.2 ENST00000264932 NM_004168.2 No Yes 6 Yes Yes Yes Yes Yes No Yes FP, SDH2, SDHF SDHB 6390 ENST00000375499 NM_003000.2 ENST00000375499 NM_003000.2 No Yes 6 Yes Yes Yes Yes Yes No Yes SDH, SDH1 SDHC 6391 ENST00000367975 NM_003001.3 ENST00000367975 NM_003001.3 No Yes 6 Yes Yes Yes Yes Yes No Yes CYB560, PGL3, cybL SDHD 6392 ENST00000375549 NM_003002.3 ENST00000375549 NM_003002.3 No Yes 6 Yes Yes Yes Yes Yes No Yes PGL, PGL1, cybS SOX2 6657 ENST00000325404 NM_003106.3 ENST00000325404 NM_003106.3 Yes No 6 Yes Yes Yes Yes Yes No Yes SPEN 23013 ENST00000375759 NM_015001.2 ENST00000375759 NM_015001.2 No Yes 6 Yes Yes Yes Yes Yes No Yes KIAA0929, MINT, RBM15C, SHARP SRC 6714 ENST00000358208 NM_198291.2 ENST00000358208 NM_198291.2 Yes No 6 Yes Yes Yes Yes Yes No Yes ASV, SRC1, c-src SRSF2 6427 ENST00000359995 NM_003016.4 ENST00000359995 NM_003016.4 No No 6 Yes Yes Yes No Yes Yes Yes PR264, SC-35, SC35, SFRS2, SFRS2A STAT3 6774 ENST00000264657 NM_139276.2 ENST00000264657 NM_139276.2 Yes No 6 Yes Yes Yes Yes Yes No Yes APRF SUFU 51684 ENST00000369902 NM_016169.3 ENST00000369902 NM_016169.3 No Yes 6 Yes Yes Yes Yes Yes No Yes PRO1280, SUFUH, SUFUXL SYK 6850 ENST00000375746 NM_003177.5 ENST00000375746 NM_003177.5 Yes No 6 Yes Yes Yes Yes Yes No Yes TENT5C 54855 ENST00000369448 NM_017709.3 ENST00000369448 NM_017709.3 No Yes 6 Yes Yes Yes Yes Yes No Yes FAM46C, FLJ20202 TGFBR2 7048 ENST00000295754 NM_003242.5 ENST00000295754 NM_003242.6 No Yes 6 Yes Yes Yes Yes Yes No Yes MFS2, TBR-ii, TBRII TMPRSS2 7113 ENST00000398585 NM_001135099.1 ENST00000398585 NM_001135099.1 No No 6 Yes Yes Yes Yes Yes No Yes PRSS10 TNFRSF14 8764 ENST00000355716 NM_003820.2 ENST00000355716 NM_003820.2 No Yes 6 Yes Yes Yes Yes Yes No Yes ATAR, CD270, HVEA, HVEM, LIGHTR TSC2 7249 ENST00000219476 NM_000548.3 ENST00000219476 NM_000548.3 No Yes 6 Yes Yes Yes Yes Yes No Yes LAM, PPP1R160, TSC4, tuberin XPO1 7514 ENST00000401558 NM_003400.3 ENST00000401558 NM_003400.3 Yes No 6 Yes Yes Yes Yes Yes No Yes CRM-1, CRM1, emb AKT3 10000 ENST00000263826 NM_005465.4 ENST00000263826 NM_005465.4 Yes No 5 Yes Yes Yes Yes Yes No No PKBG, PRKBG, RAC-gamma ARAF 369 ENST00000377045 NM_001654.4 ENST00000377045 NM_001654.4 Yes No 5 Yes Yes Yes Yes Yes No No ARAF1 ARID1B 57492 ENST00000346085 NM_020732.3 ENST00000647938 NM_020732.3 No Yes 5 Yes Yes Yes No No Yes Yes 6A3-5, BAF250b, DAN15, ELD/OSA1, KIAA1235, p250R AURKA 6790 ENST00000312783 NM_003600.2 ENST00000312783 NM_003600.2 Yes No 5 Yes Yes Yes Yes Yes No No AIK, ARK1, AurA, BTAK, PPP1R47, STK15, STK6 AURKB 9212 ENST00000585124 NM_004217.3 ENST00000585124 NM_004217.3 Yes No 5 Yes Yes Yes Yes Yes No No ARK2, Aik2, AurB, IPL1, PPP1R48, STK12, STK5 AXL 558 ENST00000301178 NM_021913.4 ENST00000301178 NM_021913.4 Yes No 5 Yes Yes Yes Yes Yes No No JTK11, Tyro7, UFO BCL10 8915 ENST00000370580 NM_003921.4 ENST00000648566 NM_003921.4 No Yes 5 Yes Yes Yes No Yes No Yes CIPER, CLAP, c-E10, mE10 BCORL1 63035 ENST00000218147 ENST00000218147 NM_021946.4 No Yes 5 Yes No Yes Yes Yes No Yes CXorf10, FLJ11362 BCR 613 ENST00000305877 NM_004327.3 ENST00000305877 NM_004327.3 Yes No 5 Yes No Yes Yes Yes No Yes ALL, BCR1, CML, D22S11, D22S662, PHL BIRC3 330 ENST00000263464 NM_182962.2 ENST00000263464 NM_182962.2 Yes Yes 5 Yes Yes Yes No Yes No Yes API2, MALT2, MIHC, RNF49, c-IAP2, cIAP2, hiap-1 BLM 641 ENST00000355112 NM_000057.2 ENST00000355112 NM_000057.2 No Yes 5 Yes Yes Yes No Yes No Yes BS, RECQ2, RECQL3 BTG1 694 ENST00000256015 NM_001731.2 ENST00000256015 NM_001731.2 No Yes 5 Yes No Yes Yes Yes No Yes APRO2 CDK8 1024 ENST00000381527 NM_001260.1 ENST00000381527 NM_001260.1 Yes No 5 Yes Yes Yes Yes Yes No No K35 CDKN2B 1030 ENST00000276925 NM_004936.3 ENST00000276925 NM_004936.3 No Yes 5 Yes Yes Yes Yes Yes No No CDK4I, INK4B, MTS2, P15, TP15, p15INK4b CHEK1 1111 ENST00000428830 NM_001274.5 ENST00000428830 NM_001274.5 No Yes 5 Yes Yes Yes Yes Yes No No CHK1 CRKL 1399 ENST00000354336 NM_005207.3 ENST00000354336 NM_005207.3 Yes No 5 Yes Yes Yes Yes Yes No No CYLD 1540 ENST00000398568 NM_001042355.1 ENST00000398568 NM_001042355.1 No Yes 5 Yes Yes Yes No No Yes Yes CYLD1, KIAA0849, USPL2 DOT1L 84444 ENST00000398665 NM_032482.2 ENST00000398665 NM_032482.2 Yes No 5 Yes Yes Yes Yes Yes No No DOT1, KIAA1814, KMT4 EED 8726 ENST00000263360 NM_003797.3 ENST00000263360 NM_003797.3 No Yes 5 Yes Yes Yes Yes Yes No No HEED, WAIT-1 EIF4A2 1974 ENST00000323963 NM_001967.3 ENST00000323963 NM_001967.3 Yes No 5 Yes Yes Yes No Yes No Yes BM-010, DDX2B EPHA3 2042 ENST00000336596 NM_005233.5 ENST00000336596 NM_005233.5 No Yes 5 Yes Yes Yes Yes Yes No No ETK, ETK1, HEK, HEK4, TYRO4 EPHB1 2047 ENST00000398015 NM_004441.4 ENST00000398015 NM_004441.4 Yes Yes 5 Yes Yes Yes Yes Yes No No EPHT2, Hek6 ERCC4 2072 ENST00000311895 NM_005236.2 ENST00000311895 NM_005236.2 No Yes 5 Yes Yes Yes Yes No No Yes FANCQ, XPF ETV1 2115 ENST00000405192 NM_001163147.1 ENST00000405192 NM_001163147.1 Yes No 5 Yes Yes Yes No Yes No Yes ER81 FAS 355 ENST00000355740 NM_000043.4 ENST00000652046 NM_000043.6 No Yes 5 Yes No Yes Yes Yes No Yes APO-1, APT1, CD95, FAS1, TNFRSF6 FGF19 9965 ENST00000294312 NM_005117.2 ENST00000294312 NM_005117.2 Yes No 5 Yes Yes Yes Yes Yes No No FGF3 2248 ENST00000334134 NM_005247.2 ENST00000334134 NM_005247.2 Yes No 5 Yes Yes Yes Yes Yes No No HBGF-3, INT2 FGF4 2249 ENST00000168712 NM_002007.2 ENST00000168712 NM_002007.2 Yes No 5 Yes Yes Yes Yes Yes No No HBGF-4, HST, HST-1, HSTF1, K-FGF, KFGF FH 2271 ENST00000366560 NM_000143.3 ENST00000366560 NM_000143.3 No Yes 5 Yes Yes Yes Yes No No Yes FLT1 2321 ENST00000282397 NM_002019.4 ENST00000282397 NM_002019.4 Yes No 5 Yes Yes Yes Yes Yes No No FLT, VEGFR1 FLT4 2324 ENST00000261937 NM_182925.4 ENST00000261937 NM_182925.4 Yes No 5 Yes Yes Yes No Yes No Yes VEGFR-3, VEGFR3 FOXO1 2308 ENST00000379561 NM_002015.3 ENST00000379561 NM_002015.3 No Yes 5 Yes Yes Yes No Yes No Yes FKH1, FKHR, FOXO1A FOXP1 27086 ENST00000318789 NM_001244814.1 ENST00000318789 NM_001244814.1 Yes Yes 5 Yes Yes Yes No Yes No Yes 12CC4, HSPC215, QRF1, hFKH1B GRIN2A 2903 ENST00000330684 NM_001134407.1 ENST00000330684 NM_001134407.1 No Yes 5 Yes Yes Yes No Yes No Yes GluN2A, NMDAR2A GSK3B 2932 ENST00000316626 NM_002093.3 ENST00000316626 NM_002093.3 Yes No 5 Yes Yes Yes Yes Yes No No ID3 3399 ENST00000374561 NM_002167.4 ENST00000374561 NM_002167.4 No Yes 5 Yes Yes Yes Yes Yes No No HEIR-1, bHLHb25 IGF1R 3480 ENST00000268035 NM_000875.3 ENST00000650285 NM_000875.3 Yes No 5 Yes Yes Yes Yes Yes No No CD221, IGFIR, IGFR, JTK13, MGC18216 IKBKE 9641 ENST00000367120 NM_014002.3 ENST00000581977 NM_014002.3 Yes No 5 Yes Yes Yes Yes Yes No No IKK-i, IKKE, KIAA0151 IL7R 3575 ENST00000303115 NM_002185.3 ENST00000303115 NM_002185.3 Yes No 5 Yes Yes Yes No Yes No Yes CD127, IL7RA INPP4B 8821 ENST00000262992 NM_001101669.1 ENST00000262992 NM_001101669.1 No Yes 5 Yes Yes Yes Yes Yes No No IRS2 8660 ENST00000375856 NM_003749.2 ENST00000375856 NM_003749.2 Yes No 5 Yes Yes Yes Yes Yes No No KLF4 9314 ENST00000374672 NM_004235.4 ENST00000374672 NM_004235.4 Yes Yes 5 Yes Yes Yes No No Yes Yes EZF, GKLF LMO1 4004 ENST00000335790 NM_002315.2 ENST00000335790 NM_002315.2 Yes No 5 Yes Yes Yes No Yes No Yes RBTN1, RHOM1 MALT1 10892 ENST00000348428 NM_006785.3 ENST00000649217 NM_006785.3 No No 5 Yes Yes Yes No Yes No Yes MLT, PCASP1 MAP3K13 9175 ENST00000265026 NM_004721.4 ENST00000265026 NM_004721.4 Yes No 5 Yes Yes Yes Yes No No Yes LZK, MEKK13 MCL1 4170 ENST00000369026 NM_021960.4 ENST00000369026 NM_021960.4 Yes No 5 Yes Yes Yes Yes Yes No No BCL2L3, Mcl-1 MEF2B 100271849 ENST00000162023 NM_001145785.1 ENST00000424583 NM_001145785.1 Yes No 5 Yes Yes Yes Yes Yes No No RSRFR2 MRE11 4361 ENST00000323929 NM_005591.3 ENST00000323929 NM_005591.3 No Yes 5 Yes Yes Yes Yes Yes No No ATLD, MRE11A MSH3 4437 ENST00000265081 NM_002439.4 ENST00000265081 NM_002439.4 No Yes 5 Yes Yes Yes Yes Yes No No MSI2 124540 ENST00000284073 NM_138962.2 ENST00000284073 NM_138962.2 Yes No 5 Yes Yes Yes No Yes No Yes NBN 4683 ENST00000265433 NM_002485.4 ENST00000265433 NM_002485.4 No Yes 5 Yes Yes Yes Yes No No Yes AT-V1, AT-V2, ATV, NBS, NBS1 NCOR1 9611 ENST00000268712 NM_006311.3 ENST00000268712 NM_006311.3 No Yes 5 Yes Yes Yes No No Yes Yes KIAA1047, MGC104216, N-CoR, PPP1R109, TRAC1, hCIT529I10, hN-CoR NFKBIA 4792 ENST00000216797 NM_020529.2 ENST00000216797 NM_020529.2 No Yes 5 Yes Yes Yes Yes Yes No No IKBA, IkappaBalpha, MAD-3, NFKBI NSD1 64324 ENST00000439151 NM_022455.4 ENST00000439151 NM_022455.4 Yes Yes 5 Yes Yes Yes No Yes No Yes ARA267, FLJ22263, KMT3B, STO NT5C2 22978 ENST00000343289 NM_001134373.2 ENST00000343289 NM_001134373.2 Yes No 5 Yes No Yes Yes Yes No Yes GMP, NT5B, PNT5, SPG45, SPG65, cN-II P2RY8 286530 ENST00000381297 NM_178129.4 ENST00000381297 NM_178129.4 No Yes 5 Yes No Yes Yes Yes No Yes P2Y8 PDCD1 5133 ENST00000334409 NM_005018.2 ENST00000334409 NM_005018.2 Yes No 5 Yes Yes Yes Yes Yes No No CD279, PD-1, SLEB2, hSLE1 PIK3CB 5291 ENST00000289153 NM_006219.2 ENST00000289153 NM_006219.2 Yes No 5 Yes Yes Yes Yes No No Yes PIK3C1 PMS2 5395 ENST00000265849 NM_000535.5 ENST00000265849 NM_000535.5 No Yes 5 Yes Yes Yes Yes No No Yes HNPCC4, H_DJ0042M02.9, MLH4, PMSL2 POLD1 5424 ENST00000440232 NM_002691.3 ENST00000440232 NM_002691.3 No Yes 5 Yes Yes Yes Yes No No Yes POLD POLE 5426 ENST00000320574 NM_006231.2 ENST00000320574 NM_006231.2 No Yes 5 Yes Yes Yes Yes No No Yes POLE1 POT1 25913 ENST00000357628 NM_015450.2 ENST00000357628 NM_015450.2 No Yes 5 Yes Yes Yes No Yes No Yes DKFZp586D211, hPot1 PPARG 5468 ENST00000287820 NM_015869.4 ENST00000287820 NM_015869.4 Yes No 5 Yes Yes Yes Yes No No Yes NR1C3, PPARG1, PPARG2, PPARgamma RAC1 5879 ENST00000356142 NM_018890.3 ENST00000356142 NM_018890.3 Yes No 5 Yes Yes Yes Yes No No Yes Rac-1, TC-25, p21-Rac1 RAD50 10111 ENST00000265335 NM_005732.3 ENST00000378823 NM_005732.3 No Yes 5 Yes Yes Yes No Yes No Yes RAD50-2, hRad50 RAD51 5888 ENST00000267868 NM_002875.4 ENST00000267868 NM_002875.4 No Yes 5 Yes Yes Yes Yes Yes No No BRCC5, FANCR, HsRad51, HsT16930, RAD51A, RECA RAD51B 5890 ENST00000487270 NM_133509.3 ENST00000487270 NM_133509.3 No Yes 5 Yes Yes Yes Yes No No Yes R51H2, RAD51L1, REC2, hREC2 RBM10 8241 ENST00000329236 NM_001204468.1 ENST00000628161 NM_001204468.1 No Yes 5 Yes Yes Yes Yes No No Yes DXS8237E, GPATC9, GPATCH9, KIAA0122, S1-1, ZRANB5 REL 5966 ENST00000295025 NM_002908.2 ENST00000295025 NM_002908.2 Yes No 5 Yes Yes Yes Yes No No Yes HIVEN86A, I-Rel, c-Rel RHOA 387 ENST00000418115 NM_001664.2 ENST00000418115 NM_001664.2 Yes No 5 Yes Yes Yes No Yes No Yes ARH12, ARHA, RHOH12, Rho12 RICTOR 253260 ENST00000357387 NM_152756.3 ENST00000357387 NM_152756.3 Yes No 5 Yes Yes Yes Yes Yes No No AVO3, KIAA1999, MGC39830, PIA RPTOR 57521 ENST00000306801 NM_020761.2 ENST00000306801 NM_020761.2 Yes No 5 Yes Yes Yes Yes Yes No No KIAA1303, KOG1, Mip1, raptor SETBP1 26040 ENST00000282030 NM_015559.2 ENST00000649279 NM_015559.2 Yes No 5 Yes No Yes No Yes Yes Yes KIAA0437, SEB SOX9 6662 ENST00000245479 NM_000346.3 ENST00000245479 NM_000346.3 Yes Yes 5 Yes Yes Yes Yes No Yes No CMD1, CMPD1 STAT5B 6777 ENST00000293328 NM_012448.3 ENST00000293328 NM_012448.3 Yes No 5 Yes Yes Yes No Yes No Yes SUZ12 23512 ENST00000322652 NM_015355.2 ENST00000322652 NM_015355.2 No Yes 5 Yes Yes Yes No Yes No Yes CHET9, JJAZ1, KIAA0160 TBX3 6926 ENST00000257566 NM_016569.3 ENST00000257566 NM_016569.3 No Yes 5 Yes Yes Yes Yes No No Yes TBX3-ISO, UMS, XHL TCF3 6929 ENST00000344749 NM_001136139.2 ENST00000588136 NM_001136139.2 No Yes 5 Yes Yes Yes No Yes No Yes E2A, E47, ITF1, MGC129647, MGC129648, VDIR, bHLHb21 TERT 7015 ENST00000310581 NM_198253.2 ENST00000310581 NM_198253.2 Yes No 5 Yes Yes Yes Yes No No Yes EST2, TCS1, TP2, TRT, hEST2 TET1 80312 ENST00000373644 NM_030625.2 ENST00000373644 NM_030625.2 No Yes 5 Yes Yes Yes No Yes No Yes CXXC6, KIAA1676, LCX, bA119F7.1 TOP1 7150 ENST00000361337 NM_003286.2 ENST00000361337 NM_003286.2 Yes No 5 Yes Yes Yes No Yes No Yes TP63 8626 ENST00000264731 NM_003722.4 ENST00000264731 NM_003722.4 Yes Yes 5 Yes Yes Yes No Yes No Yes EEC3, KET, OFC8, SHFM4, TP53CP, TP53L, TP73L, p53CP, p63, p73H, p73L TRAF7 84231 ENST00000326181 NM_032271.2 ENST00000326181 NM_032271.2 No No 5 Yes Yes Yes No No Yes Yes DKFZp586I021, MGC7807, RFWD1, RNF119 TSHR 7253 ENST00000298171 NM_000369.2 ENST00000541158 NM_000369.2 Yes No 5 Yes Yes Yes No Yes Yes No LGR3 ZRSR2 8233 ENST00000307771 NM_005089.3 ENST00000307771 NM_005089.3 No No 5 Yes Yes Yes No Yes No Yes U2AF1-RS2, U2AF1L2, URP, ZC3H22 ACVR1 90 ENST00000263640 NM_001111067.2 ENST00000263640 NM_001111067.2 Yes No 4 Yes Yes Yes No No No Yes ACVR1A, ACVRLK2, ALK2, SKR1 ACVR1B 91 ENST00000257963 NM_004302 ENST00000257963 NM_004302 No Yes 4 Yes No No Yes No Yes Yes ACVRLK4, ALK4, ActRIB, SKR2 ALOX12B 242 ENST00000319144 NM_001139.2 ENST00000647874 NM_001139.2 Yes Yes 4 Yes Yes Yes Yes No No No 12R-LOX AXIN2 8313 ENST00000307078 NM_004655.3 ENST00000307078 NM_004655.3 No Yes 4 Yes Yes Yes No No No Yes DKFZp781B0869, MGC126582 BCL11B 64919 ENST00000357195 NM_138576.3 ENST00000357195 NM_138576.3 No Yes 4 Yes No Yes No Yes No Yes CTIP-2, CTIP2, ZNF856B, hRIT1-alpha BCL2L1 598 ENST00000307677 NM_138578.1 ENST00000307677 NM_138578.1 No No 4 Yes Yes Yes Yes No No No BCL2L, BCLX, Bcl-X, PPP1R52, bcl-xL, bcl-xS BMPR1A 657 ENST00000372037 NM_004329.2 ENST00000372037 NM_004329.2 No Yes 4 Yes Yes Yes No No No Yes ACVRLK3, ALK3, CD292 CDKN1A 1026 ENST00000244741 NM_078467.2 ENST00000244741 NM_078467.2 No Yes 4 Yes Yes Yes Yes No No No CAP20, CDKN1, SDI1, WAF1, p21CIP1, p21Cip1/Waf1 CIITA 4261 ENST00000324288 NM_001286402 ENST00000324288 NM_000246.3 No Yes 4 Yes No Yes No Yes No Yes MHC2TA, NLRA CUL3 8452 ENST00000264414 NM_003590.4 ENST00000264414 NM_003590.4 No Yes 4 Yes Yes Yes Yes No No No CUX1 1523 ENST00000292535 NM_181552.3 ENST00000292535 NM_181552.3 No Yes 4 Yes No Yes No Yes No Yes CDP, CDP/Cut, CDP/Cux, CDP1, CUT, CUTL1, CUX, Clox, Cux/CDP, GOLIM6 DDX3X 1654 ENST00000399959 NM_001356.4 ENST00000478993 NM_001356.4 No Yes 4 Yes No Yes No Yes No Yes DBX, DDX14, DDX3 DICER1 23405 ENST00000393063 NM_177438.2 ENST00000393063 NM_177438.2 No Yes 4 Yes Yes Yes No No No Yes Dicer, HERNA, K12H4.8-LIKE, KIAA0928, MNG1 DIS3 22894 ENST00000377767 NM_014953.3 ENST00000377767 NM_014953.3 No Yes 4 Yes Yes Yes Yes No No No EXOSC11, KIAA1008, RRP44, dis3p DNAJB1 3337 ENST00000254322 NM_006145.1 ENST00000254322 NM_006145.1 No No 4 Yes Yes Yes No No No Yes HSPF1, Hsp40, RSPH16B, Sis1 DNMT1 1786 ENST00000340748 NM_001379.2 ENST00000340748 NM_001379.2 Yes No 4 Yes Yes Yes No No Yes No CXXC9, DNMT, MCMT DROSHA 29102 ENST00000344624 NM_013235.4 ENST00000344624 NM_013235.4 No No 4 Yes Yes Yes No No No Yes Etohi2, HSA242976, RN3, RNASE3L, RNASEN EPAS1 2034 ENST00000263734 NM_001430.4 ENST00000263734 NM_001430.4 No No 4 Yes Yes Yes No No No Yes HIF2A, MOP2, PASD2, bHLHe73 EPHA5 2044 ENST00000273854 NM_004439.5 ENST00000273854 NM_004439.5 No No 4 Yes Yes Yes No Yes No No CEK7, Hek7 EPHA7 2045 ENST00000369303 NM_004440.3 ENST00000369303 NM_004440.3 Yes Yes 4 Yes Yes Yes No Yes No No Hek11 ERCC2 2068 ENST00000391945 NM_000400.3 ENST00000391945 NM_000400.3 No Yes 4 Yes Yes Yes No No No Yes EM9, MGC102762, MGC126218, MGC126219, XPD ERCC3 2071 ENST00000285398 NM_000122.1 ENST00000285398 NM_000122.1 No Yes 4 Yes Yes Yes No No No Yes RAD25, XPB ERCC5 2073 ENST00000355739 NM_000123.3 ENST00000652225 NM_000123.4 No Yes 4 Yes Yes Yes No No No Yes ERCM2, XPGC ERRFI1 54206 ENST00000377482 NM_018948.3 ENST00000377482 NM_018948.3 No Yes 4 Yes Yes Yes Yes No No No GENE-33, MIG-6, RALT ETV4 2118 ENST00000319349 NM_001079675.2 ENST00000319349 NM_001079675.2 Yes No 4 Yes No No Yes Yes No Yes E1A-F, E1AF, PEA3 ETV5 2119 ENST00000306376 NM_004454.2 ENST00000306376 NM_004454.2 Yes No 4 Yes No No Yes Yes No Yes ERM EWSR1 2130 ENST00000397938 NM_005243.3 ENST00000397938 NM_005243.3 Yes No 4 Yes No No Yes Yes No Yes EWS FANCD2 2177 ENST00000383807 NM_001018115.1 ENST00000675286 NM_001018115.1 No Yes 4 Yes No Yes No Yes No Yes FA-D2, FACD, FANCD FANCG 2189 ENST00000378643 NM_004629 ENST00000378643 NM_004629 No Yes 4 Yes No No Yes Yes No Yes FAG, XRCC9 FAT1 2195 ENST00000441802 NM_005245.3 ENST00000441802 NM_005245.3 No Yes 4 Yes Yes Yes No No No Yes CDHF7, CDHR8, FAT FBXO11 80204 ENST00000403359 NM_001190274.1 ENST00000403359 NM_001190274.1 No Yes 4 Yes No Yes No Yes No Yes FBX11, UBR6 FOXA1 3169 ENST00000250448 NM_004496.3 ENST00000250448 NM_004496.3 Yes Yes 4 Yes Yes Yes No No No Yes HNF3A GLI1 2735 ENST00000228682 NM_005269.2 ENST00000228682 NM_005269.2 Yes No 4 Yes Yes Yes No Yes No No GLI GNA13 10672 ENST00000439174 NM_006572.5 ENST00000439174 NM_006572.5 Yes Yes 4 Yes No Yes Yes Yes No No G13, MGC46138 H1-2 3006 ENST00000343677 NM_005319.3 ENST00000343677 NM_005319.3 No No 4 Yes Yes Yes No Yes No No H1.2, H1F2, H1c, H1s-1, HIST1H1C H3-3B 3021 ENST00000254810 NM_005324.3 ENST00000254810 NM_005324.3 No No 4 Yes Yes Yes No No No Yes H3.3B, H3F3B HDAC1 3065 ENST00000373548 NM_004964.2 ENST00000373548 NM_004964.2 Yes No 4 Yes No Yes Yes Yes No No GON-10, HD1, KDAC1, RPD3L1 HLA-A 3105 ENST00000376809 NM_001242758.1 ENST00000376809 NM_001242758.1 No Yes 4 Yes Yes Yes No No No Yes IKZF3 22806 ENST00000346872 NM_012481.4 ENST00000346872 NM_012481.4 Yes Yes 4 Yes No Yes No Yes No Yes Aiolos, ZNFN1A3 INHBA 3624 ENST00000242208 NM_002192.2 ENST00000242208 NM_002192.2 Yes Yes 4 Yes Yes Yes No Yes No No LATS1 9113 ENST00000253339 NM_004690.3 ENST00000253339 NM_004690.3 No Yes 4 Yes Yes Yes No No No Yes WARTS LATS2 26524 ENST00000382592 NM_014572.2 ENST00000382592 NM_014572.2 No Yes 4 Yes Yes Yes No No No Yes LYN 4067 ENST00000519728 NM_002350.3 ENST00000519728 NM_002350.3 Yes No 4 Yes Yes Yes Yes No No No JTK8 MAF 4094 ENST00000393350 NM_001031804.2 ENST00000393350 NM_001031804.2 No No 4 Yes No No Yes Yes No Yes c-MAF MAP3K14 9020 ENST00000344686 NM_003954.3 ENST00000344686 NM_003954.3 Yes No 4 Yes Yes Yes No Yes No No FTDCR1B, HS, HSNIK MAX 4149 ENST00000358664 NM_002382.4 ENST00000358664 NM_002382.4 No Yes 4 Yes Yes Yes No No No Yes bHLHd4, bHLHd5, bHLHd6, bHLHd7, bHLHd8 MLLT1 4298 ENST00000252674 NM_005934.3 ENST00000252674 NM_005934.3 No No 4 Yes Yes No No Yes No Yes ENL, LTG19, YEATS1 MST1R 4486 ENST00000296474 NM_002447.2 ENST00000296474 NM_002447.2 Yes No 4 Yes Yes Yes Yes No No No CD136, CDw136, PTK8, RON, SEA MYB 4602 ENST00000367814 NM_005375 ENST00000367814 NM_005375 Yes No 4 Yes No No Yes Yes No Yes c-myb MYOD1 4654 ENST00000250003 NM_002478.4 ENST00000250003 NM_002478.4 No Yes 4 Yes Yes Yes No No No Yes MYF3, MYOD, bHLHc1 NCOR2 9612 ENST00000405201 NM_006312.6 ENST00000405201 NM_006312.6 No No 4 Yes No Yes No Yes No Yes CTG26, SMRT, SMRTE, TNRC14, TRAC-1 NOTCH3 4854 ENST00000263388 NM_000435.2 ENST00000263388 NM_000435.2 Yes Yes 4 Yes Yes Yes Yes No No No CADASIL, CASIL NUP93 9688 ENST00000308159 NM_014669.4 ENST00000308159 NM_014669.4 No No 4 Yes Yes Yes No Yes No No KIAA0095 PARP1 142 ENST00000366794 NM_001618.3 ENST00000366794 NM_001618.3 No Yes 4 Yes Yes Yes Yes No No No ADPRT, ARTD1, PARP, PPOL PHOX2B 8929 ENST00000226382 NM_003924.3 ENST00000226382 NM_003924.3 No Yes 4 Yes Yes Yes No No No Yes NBPhox, PMX2B PIK3C2G 5288 ENST00000266497 NM_004570.4 ENST00000433979 NM_004570.4 No No 4 Yes Yes Yes Yes No No No PIK3CG 5294 ENST00000359195 NM_002649.2 ENST00000359195 NM_002649.2 Yes No 4 Yes Yes Yes No Yes No No PIK3R2 5296 ENST00000222254 NM_005027.3 ENST00000222254 NM_005027.3 No Yes 4 Yes Yes Yes No Yes No No P85B PLCG2 5336 ENST00000359376 NM_002661.3 ENST00000564138 NM_002661.3 Yes No 4 Yes Yes Yes No Yes No No PPM1D 8493 ENST00000305921 NM_003620.3 ENST00000305921 NM_003620.3 Yes No 4 Yes Yes Yes No No No Yes PP2C-DELTA, Wip1 PPP6C 5537 ENST00000373547 NM_002721.4 ENST00000373547 NM_002721.4 No Yes 4 Yes Yes Yes No No No Yes PP6 PREX2 80243 ENST00000288368 NM_024870.2 ENST00000288368 NM_024870.2 No No 4 Yes Yes Yes No No No Yes DEP.2, DEPDC2, FLJ12987, P-REX2, PPP1R129 PRKCI 5584 ENST00000295797 NM_002740.5 ENST00000295797 NM_002740.5 Yes No 4 Yes Yes Yes Yes No No No DXS1179E, PKCI PRKN 5071 ENST00000366898 NM_004562.2 ENST00000366898 NM_004562.2 No Yes 4 Yes Yes Yes Yes No No No AR-JP, PARK2, PDJ, parkin PTPRT 11122 ENST00000373198 NM_133170.3 ENST00000373198 NM_133170.3 No Yes 4 Yes Yes Yes No No No Yes KIAA0283, RPTPrho RAD51C 5889 ENST00000337432 NM_058216.2 ENST00000337432 NM_058216.2 No Yes 4 Yes Yes Yes Yes No No No FANCO, RAD51L2 RAD51D 5892 ENST00000345365 NM_002878.3 ENST00000345365 NM_002878.3 No Yes 4 Yes Yes Yes Yes No No No HsTRAD, R51H3, RAD51L3, Trad RAD52 5893 ENST00000358495 NM_134424.2 ENST00000358495 NM_134424.2 No No 4 Yes Yes Yes Yes No No No RAD54L 8438 ENST00000371975 NM_001142548.1 ENST00000371975 NM_001142548.1 No No 4 Yes Yes Yes Yes No No No RAD54A, hHR54, hRAD54 RECQL4 9401 ENST00000428558 NM_004260.3 ENST00000617875 NM_004260.4 No Yes 4 Yes Yes Yes No No No Yes RecQ4 RRAS2 22800 ENST00000256196 NM_012250.5 ENST00000256196 NM_012250.5 Yes No 4 Yes Yes Yes No No No Yes TC21 RUNX1T1 862 ENST00000265814 NM_001198626.1 ENST00000265814 NM_001198626.1 Yes No 4 Yes No Yes No Yes No Yes AML1T1, CBFA2T1, ETO, MTG8, ZMYND2 SDHAF2 54949 ENST00000301761 NM_017841.2 ENST00000301761 NM_017841.2 No Yes 4 Yes Yes Yes No No No Yes C11orf79, FLJ20487, PGL2, SDH5 SGK1 6446 ENST00000237305 NM_005627.3 ENST00000237305 NM_005627.3 Yes No 4 Yes No Yes Yes Yes No No SGK SH2B3 10019 ENST00000341259 NM_005475.2 ENST00000341259 NM_005475.2 No Yes 4 Yes Yes Yes No No No Yes IDDM20, LNK SMAD3 4088 ENST00000327367 NM_005902.3 ENST00000327367 NM_005902.3 No Yes 4 Yes Yes Yes No No No Yes HsT17436, JV15-2, MADH3 STAT5A 6776 ENST00000345506 NM_003152.3 ENST00000345506 NM_003152.3 Yes No 4 Yes Yes Yes No Yes No No STAT5 STAT6 6778 ENST00000300134 NM_001178078.1 ENST00000300134 NM_001178078.1 Yes No 4 Yes No Yes No Yes No Yes D12S1644, IL-4-STAT TBL1XR1 79718 ENST00000430069 NM_024665.4 ENST00000430069 NM_024665.4 Yes No 4 Yes No Yes No Yes No Yes C21, DC42, FLJ12894, IRA1, TBLR1 TCF7L2 6934 ENST00000543371 NM_001146274.1 ENST00000627217 NM_001146274.1 No Yes 4 Yes Yes Yes No No No Yes TCF-4 TEK 7010 ENST00000380036 NM_000459.3 ENST00000380036 NM_000459.3 No No 4 Yes Yes Yes Yes No No No CD202b, TIE-2, TIE2, VMCM, VMCM1 TMEM127 55654 ENST00000258439 NM_001193304.2 ENST00000258439 NM_001193304.2 No Yes 4 Yes Yes Yes No No No Yes FLJ20507, FLJ22257 TRAF2 7186 ENST00000247668 NM_021138.3 ENST00000247668 NM_021138.3 No No 4 Yes Yes Yes No Yes No No RNF117, TRAP3 VEGFA 7422 ENST00000523873 NM_001171623.1 ENST00000523873 NM_001171623.1 Yes No 4 Yes Yes Yes Yes No No No VEGF, VEGF-A, VPF WWTR1 25937 ENST00000360632 NM_001168280.1 ENST00000360632 NM_001168280.1 Yes No 4 Yes Yes Yes No No No Yes DKFZp586I1419 XRCC2 7516 ENST00000359321 NM_005431.1 ENST00000359321 NM_005431.1 No Yes 4 Yes Yes Yes Yes No No No FANCU ZFHX3 463 ENST00000268489 NM_006885.3 ENST00000268489 NM_006885.3 No Yes 4 Yes Yes Yes No No No Yes ATBF1, C16orf47, FLJ26184, ZNF927 ABL2 27 ENST00000502732 NM_007314.3 ENST00000502732 NM_007314.3 Yes No 3 Yes No No No Yes No Yes ABLL ABRAXAS1 84142 ENST00000321945 NM_139076.2 ENST00000321945 NM_139076.2 No Yes 3 Yes Yes Yes No No No No ABRA1, ABRAXAS, CCDC98, FAM175A, FLJ13614 AFF4 27125 ENST00000265343 NM_014423 ENST00000265343 NM_014423 Yes No 3 Yes No No No Yes No Yes AF5Q31, MCEF AGO2 27161 ENST00000220592 NM_012154.3 ENST00000220592 NM_012154.3 No No 3 Yes Yes Yes No No No No CASC7, EIF2C2, LINC00980, Q10, hAGO2 ANKRD11 29123 ENST00000301030 NM_013275.5 ENST00000301030 NM_013275.5 No Yes 3 Yes Yes Yes No No No No LZ16, T13 ARHGAP26 23092 ENST00000274498 NM_015071 ENST00000274498 NM_015071 Yes Yes 3 Yes No No No Yes No Yes GRAF, KIAA0621, OPHN1L, OPHN1L1 ARHGAP35 2909 ENST00000404338 NM_004491.4 ENST00000404338 NM_004491.4 Yes Yes 3 Yes Yes No No No No Yes GRF-1, GRLF1, KIAA1722, P190A, p190ARhoGAP, p190RhoGAP ARHGEF12 23365 ENST00000397843 NM_015313 ENST00000397843 NM_015313 Yes Yes 3 Yes No No No Yes No Yes KIAA0382, LARG ARID5B 84159 ENST00000279873 NM_032199.2 ENST00000279873 NM_032199.2 No Yes 3 Yes Yes Yes No No No No FLJ21150, MRF2 ASXL2 55252 ENST00000435504 NM_018263.4 ENST00000435504 NM_018263.4 No Yes 3 Yes Yes Yes No No No No ASXH2, FLJ10898, KIAA1685 ATF1 466 ENST00000262053 NM_005171.4 ENST00000262053 NM_005171.4 Yes No 3 Yes No No No Yes No Yes TREB36 ATIC 471 ENST00000236959 NM_004044 ENST00000236959 NM_004044 Yes No 3 Yes No No No Yes No Yes AICARFT, IMPCHASE, PURH BABAM1 29086 ENST00000359435 NM_001033549.1 ENST00000359435 NM_001033549.1 No No 3 Yes Yes Yes No No No No C19orf62, FLJ20571, HSPC142, MERIT40, NBA1 BBC3 27113 ENST00000449228 NM_001127240.2 ENST00000449228 NM_001127240.2 No Yes 3 Yes Yes Yes No No No No JFY1, PUMA BCL2L11 10018 ENST00000393256 NM_138621.4 ENST00000393256 NM_138621.4 No Yes 3 Yes Yes Yes No No No No BIM, BOD, BimEL, BimL, BimS BCL2L2 599 ENST00000250405 NM_004050 ENST00000250405 NM_004050 Yes No 3 Yes No No Yes Yes No No BCL-W, KIAA0271, PPP1R51 BCL3 602 ENST00000164227 NM_005178 ENST00000164227 NM_005178 Yes No 3 Yes No No No Yes No Yes BCL4, D19S37 BCL7A 605 ENST00000261822 NM_001024808 ENST00000261822 NM_001024808 No Yes 3 Yes No No No Yes No Yes BCL7 BCL9 607 ENST00000234739 NM_004326.3 ENST00000234739 NM_004326.3 Yes No 3 Yes No No No Yes No Yes BTG2 7832 ENST00000290551 NM_006763 ENST00000290551 NM_006763 No Yes 3 Yes No No Yes Yes No No APRO1, MGC126063, MGC126064, TIS21 CARM1 10498 ENST00000327064 NM_199141.1 ENST00000327064 NM_199141.1 No No 3 Yes Yes Yes No No No No PRMT4 CBFA2T3 863 ENST00000268679 NM_005187 ENST00000268679 NM_005187 No Yes 3 Yes No No No Yes No Yes ETO2, MTG16, MTGR2, RUNX1T3, ZMYND4 CCNQ 92002 ENST00000576892 NM_152274.4 ENST00000576892 NM_152274.4 No Yes 3 Yes Yes Yes No No No No CycM, FAM58A CD22 933 ENST00000085219 NM_001771 ENST00000085219 NM_001771 No No 3 Yes No No Yes Yes No No SIGLEC-2, SIGLEC2 CD276 80381 ENST00000318443 NM_001024736.1 ENST00000318443 NM_001024736.1 Yes No 3 Yes Yes Yes No No No No B7-H3, B7H3, B7RP-2 CD58 965 ENST00000369489 NM_001779.2 ENST00000369489 NM_001779.2 No Yes 3 Yes No Yes No Yes No No LFA3 CD70 970 ENST00000245903 NM_001252 ENST00000245903 NM_001252 Yes No 3 Yes No No Yes Yes No No CD27L, CD27LG, TNFSF7 CD74 972 ENST00000009530 NM_001025159 ENST00000009530 NM_001025159 Yes No 3 Yes No No Yes No No Yes DHLAG CDC42 998 ENST00000344548 NM_001791.3 ENST00000344548 NM_001791.3 Yes No 3 Yes Yes Yes No No No No CDC42Hs, G25K CENPA 1058 ENST00000335756 NM_001809.3 ENST00000335756 NM_001809.3 No No 3 Yes Yes Yes No No No No CENP-A, CenH3 CLTCL1 8218 ENST00000427926 NM_007098 ENST00000427926 NM_007098 No No 3 Yes No No No Yes No Yes CHC22, CLH22, CLTCL, CLTD CNTRL 11064 ENST00000238341 NM_007018 ENST00000373855 NM_007018.6 No No 3 Yes No No No Yes No Yes CEP1, CEP110 COL1A1 1277 ENST00000225964 NM_000088 ENST00000225964 NM_000088 Yes No 3 Yes No No No Yes No Yes COP1 64326 ENST00000367669 NM_022457.5 ENST00000367669 NM_022457.5 Yes Yes 3 Yes Yes Yes No No No No CFAP78, FAP78, FLJ10416, RFWD2, RNF200 CSDE1 7812 ENST00000438362 NM_001242891.1 ENST00000438362 NM_001242891.1 No No 3 Yes Yes Yes No No No No D1S155E CTLA4 1493 ENST00000302823 NM_005214.4 ENST00000648405 NM_005214.4 Yes No 3 Yes Yes Yes No No No No CD152, CELIAC3, CTLA-4, GSE, IDDM12 CTNNA1 1495 ENST00000302763 NM_001903 ENST00000302763 NM_001903 No Yes 3 Yes No No Yes Yes No No CAP102 CYSLTR2 57105 ENST00000282018 NM_020377.2 ENST00000282018 NM_020377.2 Yes No 3 Yes Yes Yes No No No No CYSLT2R, CysLT(2) DCUN1D1 54165 ENST00000292782 NM_020640.2 ENST00000292782 NM_020640.2 Yes No 3 Yes Yes Yes No No No No DCUN1L1, RP42, SCCRO, SCRO, Tes3 DDIT3 1649 ENST00000346473 NM_001195057.1 ENST00000346473 NM_001195057.1 No No 3 Yes No No No Yes No Yes CHOP, CHOP10, GADD153 DEK 7913 ENST00000397239 NM_003472.3 ENST00000652689 NM_003472.4 Yes No 3 Yes No No No Yes No Yes D6S231E DNM2 1785 ENST00000355667 NM_001005360 ENST00000355667 NM_001005360 Yes No 3 Yes No No No Yes No Yes CMT2M, CMTDI1, CMTDIB, DI-CMTB, DYN2, DYNII DNMT3B 1789 ENST00000328111 NM_006892.3 ENST00000328111 NM_006892.3 No Yes 3 Yes Yes Yes No No No No DTX1 1840 ENST00000257600 NM_004416.2 ENST00000257600 NM_004416.2 No Yes 3 Yes No Yes No Yes No No RNF140, hDx-1 DUSP22 56940 ENST00000344450 NM_020185.4 ENST00000344450 NM_020185.4 No Yes 3 Yes No Yes No Yes No No JKAP, JSP1, MKPX, VHX DUSP4 1846 ENST00000240100 NM_001394.6 ENST00000240100 NM_001394.6 No Yes 3 Yes Yes Yes No No No No HVH2, MKP-2, TYP E2F3 1871 ENST00000346618 NM_001949.4 ENST00000346618 NM_001949.4 Yes No 3 Yes Yes Yes No No No No EBF1 1879 ENST00000313708 NM_024007 ENST00000313708 NM_024007 No No 3 Yes No No No Yes No Yes COE1, EBF, OLF1 EGFL7 51162 ENST00000308874 NM_201446.2 ENST00000308874 NM_201446.2 Yes No 3 Yes Yes Yes No No No No ZNEU1 EIF1AX 1964 ENST00000379607 NM_001412.3 ENST00000379607 NM_001412.3 No No 3 Yes Yes Yes No No No No EIF1A, EIF4C, eIF-1A, eIF-4C EIF4E 1977 ENST00000280892 NM_001130678.1 ENST00000280892 NM_001130678.1 Yes No 3 Yes Yes Yes No No No No EIF4E1, EIF4EL1, EIF4F ELF3 1999 ENST00000359651 NM_004433.4 ENST00000359651 NM_004433.4 Yes Yes 3 Yes Yes Yes No No No No EPR-1, ERT, ESE-1, ESX ELF4 2000 ENST00000308167 NM_001127197 ENST00000308167 NM_001127197 Yes No 3 Yes No No No Yes No Yes ELFR ELL 8178 ENST00000262809 NM_006532 ENST00000262809 NM_006532 Yes No 3 Yes No No No Yes No Yes C19orf17, ELL1, Men, PPP1R68 ELOC 6921 ENST00000284811 NM_005648.3 ENST00000284811 NM_005648.3 No No 3 Yes Yes Yes No No No No TCEB1 EMSY 56946 ENST00000334736 NM_020193 ENST00000334736 NM_020193 Yes No 3 Yes No No Yes Yes No No C11orf30 EPCAM 4072 ENST00000263735 NM_002354.2 ENST00000263735 NM_002354.2 No Yes 3 Yes Yes Yes No No No No 17-1A, 323/A3, CD326, CO-17A, EGP-2, EGP34, EGP40, Ep-CAM, GA733-2, HEA125, KS1/4, KSA, Ly74, M4S1, MH99, MIC18, MK-1, MOC31, TACST-1, TACSTD1, TROP1 ERF 2077 ENST00000222329 NM_006494.2 ENST00000222329 NM_006494.2 No Yes 3 Yes Yes Yes No No No No PE-2, PE2 ETNK1 55500 ENST00000266517 NM_018638.4 ENST00000671733 NM_018638.4 No No 3 Yes No Yes No No No Yes EKI, EKI1 EZH1 2145 ENST00000428826 NM_001991.3 ENST00000428826 NM_001991.3 Yes No 3 Yes Yes Yes No No No No KIAA0388, KMT6B FANCE 2178 ENST00000229769 NM_021922 ENST00000229769 NM_021922 No Yes 3 Yes No No No Yes No Yes FACE, FAE FANCF 2188 ENST00000327470 NM_022725 ENST00000327470 NM_022725 No Yes 3 Yes No No No Yes No Yes FANCL 55120 ENST00000233741 NM_018062.3 ENST00000233741 NM_018062.3 No Yes 3 Yes No No Yes Yes No No FAAP43, FLJ10335, PHF9, Pog FEV 54738 ENST00000295727 NM_017521.2 ENST00000295727 NM_017521.2 No No 3 Yes No No No Yes No Yes Pet-1 FGF10 2255 ENST00000264664 NM_004465 ENST00000264664 NM_004465 Yes No 3 Yes No No Yes Yes No No FGF14 2259 ENST00000376143 NM_004115 ENST00000376143 NM_004115 No Yes 3 Yes No No Yes Yes No No FHF4, SCA27 FGF23 8074 ENST00000237837 NM_020638 ENST00000237837 NM_020638 Yes No 3 Yes No No Yes Yes No No FGF6 2251 ENST00000228837 NM_020996 ENST00000228837 NM_020996 Yes No 3 Yes No No Yes Yes No No FHIT 2272 ENST00000468189 NM_001166243 ENST00000492590 NM_002012 No Yes 3 Yes No No No Yes No Yes FRA3B FLI1 2313 ENST00000527786 NM_002017.4 ENST00000527786 NM_002017.4 Yes No 3 Yes No No No Yes No Yes SIC-1 FOXO3 2309 ENST00000343882 NM_001455 ENST00000343882 NM_001455 No No 3 Yes No No No Yes No Yes AF6q21, FKHRL1, FOXO2, FOXO3A FUS 2521 ENST00000254108 NM_004960 ENST00000254108 NM_004960 Yes No 3 Yes No No No Yes No Yes ALS6, HNRNPP2, TLS, hnRNP-P2 FYN 2534 ENST00000368678 NM_153047.3 ENST00000368678 NM_153047.3 Yes No 3 Yes Yes Yes No No No No MGC45350 GNA12 2768 ENST00000275364 NM_007353.2 ENST00000275364 NM_007353.2 Yes No 3 Yes No Yes No Yes No No gep GNB1 2782 ENST00000378609 NM_001282539.1 ENST00000378609 NM_001282539.1 Yes No 3 Yes Yes Yes No No No No GPS2 2874 ENST00000380728 NM_004489.4 ENST00000380728 NM_004489.4 No Yes 3 Yes Yes Yes No No No No GREM1 26585 ENST00000300177 NM_013372.6 ENST00000300177 NM_013372.6 Yes No 3 Yes Yes Yes No No No No CKTSF1B1, CRAC1, DAND2, DRM, HMPS, gremlin H1-3 3007 ENST00000244534 NM_005320.2 ENST00000244534 NM_005320.2 No Yes 3 Yes No Yes No Yes No No H1.3, H1F3, H1d, H1s-2, HIST1H1D H1-4 3008 ENST00000304218 NM_005321.2 ENST00000304218 NM_005321.2 Yes No 3 Yes No Yes No Yes No No H1.4, H1F4, H1e, H1s-4, HIST1H1E H2AC11 8969 ENST00000359193 NM_021064.4 ENST00000359193 NM_021064.5 No No 3 Yes No Yes No Yes No No H2A.1b, H2A/p, H2AFP, HIST1H2AG H2AC16 8332 ENST00000357320 NM_003511 ENST00000613174 NM_003511.3 No No 3 Yes No Yes No Yes No No H2A/i, H2AFI, HIST1H2AL, dJ193B12.9 H2AC17 8336 ENST00000359611 NM_003514 ENST00000359611 NM_003514 Yes No 3 Yes No Yes No Yes No No H2A.1, H2A/n, H2AFN, HIST1H2AM H2AC6 8334 ENST00000314088 NM_003512.3 ENST00000314088 NM_003512.3 No No 3 Yes No Yes No Yes No No H2AFL, HIST1H2AC H2BC11 8970 ENST00000339812 NM_021058.3 ENST00000339812 NM_021058.3 No No 3 Yes No Yes No Yes No No H2B/r, H2BFR, HIST1H2BJ H2BC12 85236 ENST00000356950 NM_080593.2 ENST00000356950 NM_080593.2 No No 3 Yes No Yes No Yes No No H2BFAiii, H2BFT, HIST1H2BK H2BC17 8348 ENST00000616182 NM_003527.4 No No 3 Yes No Yes No Yes No No H2B.2, H2B/n, H2BFN, HIST1H2BO H2BC4 8347 ENST00000314332 NM_003518.3 ENST00000314332 NM_003518.3 No No 3 Yes No Yes No Yes No No H2B/l, H2BFL, HIST1H2BC H2BC5 3017 ENST00000289316 NM_021063.3 ENST00000289316 NM_021063.3 No No 3 Yes Yes Yes No No No No H2B/b, H2BFB, HIST1H2BD H3-4 8290 ENST00000366696 NM_003493.2 ENST00000366696 NM_003493.2 No No 3 Yes Yes Yes No No No No H3.4, H3/g, H3FT, H3t, HIST3H3 H3-5 440093 ENST00000340398 NM_001013699.2 ENST00000340398 NM_001013699.2 No No 3 Yes Yes Yes No No No No H3.5, H3F3C H3C1 8350 ENST00000357647 NM_003529.2 ENST00000613854 NM_003529.2 No No 3 Yes Yes Yes No No No No H3/A, H3FA, HIST1H3A H3C10 8357 ENST00000369163 NM_003536.2 ENST00000369163 NM_003536.2 No No 3 Yes Yes Yes No No No No H3/k, H3F1K, H3FK, HIST1H3H H3C11 8354 ENST00000328488 NM_003533.2 ENST00000616365 NM_003533.2 No No 3 Yes Yes Yes No No No No H3.f, H3/f, H3FF, HIST1H3I H3C12 8356 ENST00000359303 NM_003535.2 ENST00000359303 NM_003535.2 No No 3 Yes Yes Yes No No No No H3/j, H3FJ, HIST1H3J H3C13 653604 ENST00000331491 NM_001123375.2 ENST00000331491 NM_001123375.2 No No 3 Yes Yes Yes No No No No HIST2H3D H3C14 126961 ENST00000369158 NM_021059.2 ENST00000369158 NM_021059.2 No No 3 Yes Yes Yes No No No No H3, H3.2, H3/M, H3/m, H3F2, H3FM, HIST2H3C, MGC9629 H3C3 8352 ENST00000540144 NM_003531.2 ENST00000612966 NM_003531.2 No No 3 Yes Yes Yes No No No No H3/c, H3FC, HIST1H3C H3C4 8351 ENST00000356476 NM_003530.4 ENST00000356476 NM_003530.4 No No 3 Yes Yes Yes No No No No H3/b, H3FB, HIST1H3D H3C6 8353 ENST00000360408 NM_003532.2 ENST00000634733 NM_003532.2 No No 3 Yes Yes Yes No No No No H3.1, H3/d, H3FD, HIST1H3E H3C7 8968 ENST00000446824 NM_021018.2 ENST00000618052 NM_021018.2 No No 3 Yes Yes Yes No No No No H3/i, H3FI, HIST1H3F H3C8 8355 ENST00000305910 NM_003534.2 ENST00000614378 NM_003534.2 No No 3 Yes Yes Yes No No No No H3/h, H3FH, HIST1H3G HDAC4 9759 ENST00000345617 NM_006037.3 ENST00000345617 NM_006037.3 Yes Yes 3 Yes No Yes No Yes No No BDMR, HA6116, HD4, HDAC-4, HDAC-A, HDACA, KIAA0288 HDAC7 51564 ENST00000427332 XM_011538481.1 ENST00000427332 XM_011538481.1 Yes No 3 Yes No Yes No Yes No No DKFZP586J0917, HDAC7A HIF1A 3091 ENST00000337138 NM_001530.3 ENST00000337138 NM_001530.3 Yes No 3 Yes No Yes No No No Yes HIF-1alpha, HIF1, MOP1, PASD8, bHLHe78 HLA-B 3106 ENST00000412585 NM_005514.6 ENST00000412585 NM_005514.6 No Yes 3 Yes Yes Yes No No No No AS HMGA1 3159 ENST00000311487 NM_145899 ENST00000311487 NM_145899 Yes No 3 Yes No No No Yes No Yes HMGIY HMGA2 8091 ENST00000403681 NM_003483 ENST00000403681 NM_003483 Yes No 3 Yes No No No Yes No Yes BABL, HMGIC, LIPO HOXA11 3207 ENST00000006015 NM_005523 ENST00000006015 NM_005523 No Yes 3 Yes No No No Yes No Yes HOX1, HOX1I HOXB13 10481 ENST00000290295 NM_006361.5 ENST00000290295 NM_006361.5 Yes Yes 3 Yes Yes Yes No No No No HSP90AA1 3320 ENST00000216281 NM_005348 ENST00000216281 NM_005348 Yes No 3 Yes No No No Yes No Yes FLJ31884, HSP90N, HSPC1, HSPCA, Hsp89, Hsp90 ICOSLG 23308 ENST00000407780 NM_015259.4 ENST00000407780 NM_015259.4 Yes No 3 Yes Yes Yes No No No No B7-H2, B7H2, B7RP-1, B7RP1, B7h, CD275, GL50, ICOS-L, ICOSL, KIAA0653 IFNGR1 3459 ENST00000367739 NM_000416.2 ENST00000367739 NM_000416.2 No Yes 3 Yes Yes Yes No No No No CD119, IFNGR IGF1 3479 ENST00000307046 NM_001111285.1 ENST00000307046 NM_001111285.1 Yes No 3 Yes Yes Yes No No No No IGF, IGF-I, IGF1A, IGFI IGF2 3481 ENST00000434045 NM_001127598.1 ENST00000434045 NM_001127598.1 Yes No 3 Yes Yes Yes No No No No C11orf43, FLJ44734, IGF-II IL10 3586 ENST00000423557 NM_000572.2 ENST00000423557 NM_000572.2 No No 3 Yes Yes Yes No No No No CSIF, IL-10, IL10A INHA 3623 ENST00000243786 NM_002191.3 ENST00000243786 NM_002191.3 No Yes 3 Yes Yes Yes No No No No INPP4A 3631 ENST00000074304 NM_001134224.1 ENST00000074304 NM_001134224.1 No No 3 Yes Yes Yes No No No No INPP4 INPPL1 3636 ENST00000298229 NM_001567.3 ENST00000298229 NM_001567.3 No Yes 3 Yes Yes Yes No No No No SHIP2 INSR 3643 ENST00000302850 NM_000208.2 ENST00000302850 NM_000208.2 Yes No 3 Yes Yes Yes No No No No CD220 IRF1 3659 ENST00000245414 NM_002198.2 ENST00000245414 NM_002198.2 No Yes 3 Yes No Yes No Yes No No MAR IRF8 3394 ENST00000268638 NM_002163.2 ENST00000268638 NM_002163.2 No Yes 3 Yes No Yes No Yes No No ICSBP, ICSBP1, IRF-8 IRS1 3667 ENST00000305123 NM_005544.2 ENST00000305123 NM_005544.2 Yes No 3 Yes Yes Yes No No No No HIRS-1 JARID2 3720 ENST00000341776 NM_004973.3 ENST00000341776 NM_004973.3 Yes Yes 3 Yes No Yes No Yes No No JMJ KAT6A 7994 ENST00000265713 NM_006766.4 ENST00000265713 NM_006766.4 No No 3 Yes No No No Yes No Yes MOZ, MYST3, RUNXBP2, ZC2HC6A, ZNF220 KLHL6 89857 ENST00000341319 NM_130446 ENST00000341319 NM_130446 Yes Yes 3 Yes No No Yes Yes No No FLJ00029 KMT2B 9757 ENST00000222270 NM_014727.1 ENST00000420124 NM_014727.3 No Yes 3 Yes Yes Yes No No No No CXXC10, HRX2, KIAA0304, MLL1B, MLL4, TRX2, WBP7 KMT5A 387893 ENST00000330479 NM_020382.3 ENST00000402868 NM_020382.7 No No 3 Yes Yes Yes No No No No PR-Set7, SET07, SET8, SETD8 KNSTRN 90417 ENST00000249776 NM_033286.3 ENST00000249776 NM_033286.3 No No 3 Yes Yes Yes No No No No C15orf23, FLJ14502, SKAP, TRAF4AF1, kinastrin LCK 3932 ENST00000336890 NM_001042771.2 ENST00000336890 NM_001042771.2 Yes No 3 Yes No Yes No No No Yes LEF1 51176 ENST00000265165 NM_016269 ENST00000265165 NM_016269 Yes No 3 Yes No No No Yes No Yes TCF10, TCF1ALPHA, TCF7L3 LMO2 4005 ENST00000395833 NM_001142315.1 ENST00000395833 NM_001142315.1 Yes No 3 Yes No No No Yes No Yes RBTN2, RBTNL1, RHOM2, TTG2 LRP1B 53353 ENST00000389484 NM_018557 ENST00000389484 NM_018557 No Yes 3 Yes No No No Yes No Yes LRP-DIT, LRPDIT LZTR1 8216 ENST00000215739 NM_006767.3 ENST00000646124 NM_006767.3 No Yes 3 Yes Yes No No No No Yes BTBD29, LZTR-1 MAFB 9935 ENST00000373313 NM_005461.4 ENST00000373313 NM_005461.4 Yes No 3 Yes No No No Yes No Yes KRML MAPK3 5595 ENST00000263025 NM_002746.2 ENST00000263025 NM_002746.2 Yes No 3 Yes Yes Yes No No No No ERK1, PRKM3, p44erk1, p44mapk MAPKAP1 79109 ENST00000265960 NM_001006617.1 ENST00000265960 NM_001006617.1 No No 3 Yes Yes Yes No No No No MGC2745, MIP1, SIN1 MDC1 9656 ENST00000376406 NM_014641.2 ENST00000376406 NM_014641.2 No No 3 Yes Yes Yes No No No No Em:AB023051.5, KIAA0170, NFBD1 MECOM 2122 ENST00000468789 NM_001105078.3 ENST00000468789 NM_001105078.3 Yes No 3 Yes No No No Yes No Yes EVI1, KMT8E, MDS1, MDS1-EVI1, PRDM3 MGA 23269 ENST00000219905 NM_001164273.1 ENST00000219905 NM_001164273.1 No Yes 3 Yes Yes Yes No No No No FLJ12634, KIAA0518, MAD5, MXD5 MLLT10 8028 ENST00000307729 NM_001195626.1 ENST00000307729 NM_001195626.1 Yes No 3 Yes No No No Yes No Yes AF10 MLLT3 4300 ENST00000380338 NM_004529 ENST00000380338 NM_004529 Yes No 3 Yes No No No Yes No Yes AF-9, AF9, YEATS3 MN1 4330 ENST00000302326 NM_002430 ENST00000302326 NM_002430 Yes No 3 Yes No No No Yes No Yes MGCR, MGCR1, MGCR1-PEN MSI1 4440 ENST00000257552 NM_002442.3 ENST00000257552 NM_002442.3 Yes No 3 Yes Yes Yes No No No No MST1 4485 ENST00000449682 NM_020998.3 ENST00000449682 NM_020998.3 No Yes 3 Yes Yes Yes No No No No D3F15S2, DNF15S2, HGFL, NF15S2 MTAP 4507 ENST00000380172 NM_002451.3 ENST00000644715 NM_002451.3 No Yes 3 Yes Yes No Yes No No No MSAP, c86fus MYH11 4629 ENST00000300036 NM_002474 ENST00000300036 NM_002474 No Yes 3 Yes No No No Yes No Yes SMHC, SMMHC NCOA3 8202 ENST00000371998 NM_181659.2 ENST00000371998 NM_181659.2 Yes No 3 Yes Yes Yes No No No No ACTR, AIB1, CAGH16, KAT13B, SRC-3, SRC3, TNRC16, TRAM-1, bHLHe42, p/CIP NCSTN 23385 ENST00000294785 NM_015331.2 ENST00000294785 NM_015331.2 Yes No 3 Yes No Yes No Yes No No APH2, KIAA0253 NEGR1 257194 ENST00000357731 NM_173808.2 ENST00000357731 NM_173808.2 No No 3 Yes Yes Yes No No No No IGLON4, KILON, MGC46680, Ntra NKX3-1 4824 ENST00000380871 NM_006167.3 ENST00000380871 NM_006167.3 No Yes 3 Yes Yes Yes No No No No BAPX2, NKX3.1, NKX3A NOTCH4 4855 ENST00000375023 NM_004557.3 ENST00000375023 NM_004557.3 Yes Yes 3 Yes Yes Yes No No No No INT3 NR4A3 8013 ENST00000395097 NM_006981.3 ENST00000395097 NM_006981.3 Yes No 3 Yes No No No Yes No Yes CSMF, MINOR NTHL1 4913 ENST00000219066 NM_002528.5 ENST00000219066 NM_002528.5 No Yes 3 Yes Yes Yes No No No No NTH1, OCTS3 NUF2 83540 ENST00000271452 NM_031423.3 ENST00000271452 NM_031423.3 Yes No 3 Yes Yes Yes No No No No CDCA1, CT106, NUF2R NUP214 8021 ENST00000359428 NM_005085 ENST00000359428 NM_005085 Yes No 3 Yes No No No Yes No Yes CAIN, CAN, D9S46E, N214 NUP98 4928 ENST00000359171 XM_005252950.1 ENST00000355260 NM_139132.4 Yes No 3 Yes No No No Yes No Yes NUP96, Nup98-96, Nup98-Nup96 NUTM1 256646 ENST00000333756 XM_011521429.1 ENST00000333756 XM_011521429.1 No No 3 Yes No No Yes No No Yes C15orf55, DKFZp434O192, FAM22H, NUT PAK1 5058 ENST00000356341 NM_002576.4 ENST00000356341 NM_002576.4 Yes No 3 Yes Yes Yes No No No No PAK5 57144 ENST00000353224 NM_177990.2 ENST00000353224 NM_177990.2 Yes No 3 Yes Yes Yes No No No No KIAA1264, PAK7 PAX3 5077 ENST00000350526 NM_181457 ENST00000350526 NM_181457 Yes No 3 Yes No No No Yes No Yes HUP2, WS1 PAX7 5081 ENST00000420770 NM_001135254 ENST00000420770 NM_001135254 Yes No 3 Yes No No No Yes No Yes Hup1 PCBP1 5093 ENST00000303577 NM_006196.3 ENST00000303577 NM_006196.3 No No 3 Yes No Yes No Yes No No HNRPE1, HNRPX, hnRNP-E1, hnRNP-X PDGFB 5155 ENST00000331163 NM_002608.2 ENST00000331163 NM_002608.2 Yes No 3 Yes No No No Yes No Yes SIS, SSV PDK1 5163 ENST00000282077 NM_002610 ENST00000282077 NM_002610 Yes No 3 Yes No No Yes Yes No No PDPK1 5170 ENST00000342085 NM_002613.4 ENST00000342085 NM_002613.4 No No 3 Yes Yes Yes No No No No PGR 5241 ENST00000325455 NM_000926.4 ENST00000325455 NM_000926.4 Yes No 3 Yes Yes Yes No No No No NR3C3, PR PIK3C3 5289 ENST00000262039 NM_002647.2 ENST00000262039 NM_002647.2 No No 3 Yes Yes Yes No No No No Vps34 PIK3CD 5293 ENST00000377346 NM_005026.3 ENST00000377346 NM_005026.3 Yes No 3 Yes Yes Yes No No No No p110D PIK3R3 8503 ENST00000262741 NM_003629.3 ENST00000262741 NM_003629.3 No Yes 3 Yes Yes Yes No No No No PLCG1 5335 ENST00000373271 NM_182811.1 ENST00000373271 NM_182811.1 Yes No 3 Yes No Yes No No No Yes NCKAP3, PLC-II, PLC1, PLC148, PLCgamma1 PLK2 10769 ENST00000274289 NM_006622.3 ENST00000274289 NM_006622.3 No No 3 Yes Yes Yes No No No No SNK PMAIP1 5366 ENST00000316660 NM_021127.2 ENST00000316660 NM_021127.2 No Yes 3 Yes Yes Yes No No No No NOXA PML 5371 ENST00000268058 NM_033238 ENST00000268058 NM_033238 No Yes 3 Yes No No No Yes No Yes MYL, RNF71, TRIM19 PMS1 5378 ENST00000441310 NM_000534.4 ENST00000441310 NM_000534.4 No Yes 3 Yes Yes Yes No No No No MLH2, PMSL1 PNRC1 10957 ENST00000336032 NM_006813.2 ENST00000336032 NM_006813.2 No No 3 Yes Yes Yes No No No No B4-2, PROL2, PRR2 PPP4R2 151987 ENST00000356692 NM_174907.2 ENST00000356692 NM_174907.2 No No 3 Yes Yes Yes No No No No PRDM14 63978 ENST00000276594 NM_024504.3 ENST00000276594 NM_024504.3 No No 3 Yes Yes Yes No No No No PRKD1 5587 ENST00000331968 NM_002742.2 ENST00000331968 NM_002742.2 No No 3 Yes Yes Yes No No No No PKC-mu, PKCM, PKD, PRKCM PTP4A1 7803 ENST00000370651 NM_003463.4 ENST00000626021 NM_003463.4 No No 3 Yes Yes Yes No No No No PRL-1, PTPCAAX1 PTPN2 5771 ENST00000309660 NM_002828.3 ENST00000309660 NM_002828.3 No Yes 3 Yes No Yes No Yes No No PTPT, TC-PTP, TCELLPTP, TCPTP PTPRD 5789 ENST00000356435 NM_002839.3 ENST00000356435 NM_002839.3 No Yes 3 Yes Yes Yes No No No No HPTP, PTPD PTPRS 5802 ENST00000357368 NM_002850.3 ENST00000587303 NM_002850.3 No Yes 3 Yes Yes Yes No No No No QKI 9444 ENST00000361752 NM_006775 ENST00000361752 NM_006775 No Yes 3 Yes No No Yes No No Yes QK3 RAB35 11021 ENST00000229340 NM_006861.6 ENST00000229340 NM_006861.6 Yes No 3 Yes Yes Yes No No No No H-ray RAC2 5880 ENST00000249071 NM_002872.4 ENST00000249071 NM_002872.4 Yes No 3 Yes Yes Yes No No No No EN-7 RASA1 5921 ENST00000274376 NM_002890.2 ENST00000274376 NM_002890.2 No Yes 3 Yes Yes Yes No No No No CM-AVM, GAP, RASA, p120GAP, p120RASGAP RBM15 64783 ENST00000369784 NM_022768.4 ENST00000369784 NM_022768.4 Yes Yes 3 Yes No No No Yes No Yes OTT, OTT1 RECQL 5965 ENST00000421138 NM_002907.3 ENST00000421138 NM_002907.3 No Yes 3 Yes Yes Yes No No No No RecQ1, RecQL1 RHEB 6009 ENST00000262187 NM_005614.3 ENST00000262187 NM_005614.3 Yes No 3 Yes Yes Yes No No No No RHEB2 RIT1 6016 ENST00000368323 NM_006912.5 ENST00000368323 NM_006912.5 Yes No 3 Yes Yes Yes No No No No MGC125864, MGC125865, RIBB, RIT, ROC1 RPS6KA4 8986 ENST00000334205 NM_003942.2 ENST00000334205 NM_003942.2 Yes No 3 Yes Yes Yes No No No No MSK2, RSK-B RPS6KB2 6199 ENST00000312629 NM_003952.2 ENST00000312629 NM_003952.2 Yes No 3 Yes Yes Yes No No No No KLS, P70-BETA, S6KB, S6Kbeta, S6Kβ, STK14B, p70S6Kb RRAGC 64121 ENST00000373001 NM_022157.3 ENST00000373001 NM_022157.3 Yes No 3 Yes Yes Yes No No No No FLJ13311, GTR2 RRAS 6237 ENST00000246792 NM_006270.3 ENST00000246792 NM_006270.3 Yes No 3 Yes Yes Yes No No No No R-Ras RTEL1 51750 ENST00000360203 NM_001283009.1 ENST00000360203 NM_001283009.2 No Yes 3 Yes Yes Yes No No No No C20orf41, DKFZP434C013, KIAA1088, NHL, RTEL, bK3184A7.3 RXRA 6256 ENST00000481739 NM_002957.4 ENST00000481739 NM_002957.4 No No 3 Yes Yes Yes No No No No NR2B1 RYBP 23429 ENST00000477973 NM_012234.5 ENST00000477973 NM_012234.5 No Yes 3 Yes Yes Yes No No No No AAP1, DEDAF, YEAF1 SESN1 27244 ENST00000436639 NM_014454.2 ENST00000436639 NM_014454.2 No Yes 3 Yes Yes Yes No No No No PA26, SEST1 SESN2 83667 ENST00000253063 NM_031459.4 ENST00000253063 NM_031459.4 No Yes 3 Yes Yes Yes No No No No DKFZp761M0212, HI95, SEST2 SESN3 143686 ENST00000536441 NM_144665.3 ENST00000536441 NM_144665.3 No Yes 3 Yes Yes Yes No No No No MGC29667, SEST3 SET 6418 ENST00000372692 NM_001122821 ENST00000372692 NM_001122821 Yes No 3 Yes No No No Yes No Yes 2PP2A, IGAAD, IPP2A2, PHAPII, TAF-I, TAF-IBETA SETDB1 9869 ENST00000271640 NM_001145415.1 ENST00000271640 NM_001145415.1 Yes Yes 3 Yes Yes Yes No No No No ESET, KG1T, KIAA0067, KMT1E, TDRD21 SH2D1A 4068 ENST00000371139 NM_002351.4 ENST00000371139 NM_002351.4 No Yes 3 Yes Yes Yes No No No No DSHP, EBVS, IMD5, LYP, SAP, XLP, XLPD SHOC2 8036 ENST00000369452 NM_007373.3 ENST00000369452 NM_007373.3 Yes No 3 Yes Yes Yes No No No No KIAA0862, SOC-2, SOC2, SUR-8, SUR8 SHQ1 55164 ENST00000325599 NM_018130.2 ENST00000325599 NM_018130.2 No Yes 3 Yes Yes Yes No No No No FLJ10539, Shq1p SLX4 84464 ENST00000294008 NM_032444.2 ENST00000294008 NM_032444.2 No Yes 3 Yes Yes Yes No No No No BTBD12, FANCP, KIAA1784, KIAA1987 SMARCD1 6602 ENST00000394963 NM_003076.4 ENST00000394963 NM_003076.4 No No 3 Yes Yes Yes No No No No BAF60A, CRACD1, Rsc6p SMARCE1 6605 ENST00000348513 NM_003079.4 ENST00000348513 NM_003079.4 Yes Yes 3 Yes Yes No No No No Yes BAF57 SMC1A 8243 ENST00000322213 NM_006306.3 ENST00000322213 NM_006306.3 No Yes 3 Yes No Yes No Yes No No DXS423E, KIAA0178, SB1.8, SMC1L1, Smcb SMC3 9126 ENST00000361804 NM_005445.3 ENST00000361804 NM_005445.3 No Yes 3 Yes No Yes No Yes No No BAM, CSPG6, HCAP, SMC3L1, bamacan SMYD3 64754 ENST00000388985 NM_001167740.1 ENST00000490107 NM_001167740.1 Yes No 3 Yes Yes Yes No No No No KMT3E, ZMYND1, ZNFN3A1 SOS1 6654 ENST00000402219 NM_005633.3 ENST00000402219 NM_005633.3 Yes No 3 Yes Yes Yes No No No No GINGF SOX17 64321 ENST00000297316 NM_022454.3 ENST00000297316 NM_022454.3 No Yes 3 Yes Yes Yes No No No No SPRED1 161742 ENST00000299084 NM_152594.2 ENST00000299084 NM_152594.2 No Yes 3 Yes Yes Yes No No No No FLJ33903, PPP1R147 SS18 6760 ENST00000415083 NM_001007559.2 ENST00000415083 NM_001007559.2 Yes No 3 Yes No No No Yes No Yes SSXT STK19 8859 ENST00000375331 NM_004197.1 ENST00000375331 NM_004197.1 Yes No 3 Yes Yes Yes No No No No D6S60, G11 STK40 83931 ENST00000373129 NM_032017.1 ENST00000373129 NM_032017.1 No No 3 Yes Yes Yes No No No No MGC4796, SgK495 TAL1 6886 ENST00000294339 NM_001287347.2 ENST00000294339 NM_001287347.2 Yes No 3 Yes No No No Yes No Yes TCL5, bHLHa17 TAP1 6890 ENST00000354258 NM_000593.5 ENST00000354258 NM_000593.5 No No 3 Yes Yes Yes No No No No ABCB2, D6S114E, RING4 TAP2 6891 ENST00000374899 NM_018833.2 ENST00000383119 NM_018833.2 No No 3 Yes Yes Yes No No No No ABCB3, D6S217E, RING11 TCL1A 8115 ENST00000402399 NM_001098725.1 ENST00000402399 NM_001098725.1 Yes No 3 Yes No No No Yes No Yes TCL1 TFE3 7030 ENST00000315869 NM_006521.5 ENST00000315869 NM_006521.5 Yes No 3 Yes No No No Yes No Yes TFEA, bHLHe33 TGFBR1 7046 ENST00000374994 NM_004612.2 ENST00000374994 NM_004612.2 No Yes 3 Yes Yes Yes No No No No ALK-5, ALK5, ESS1, MSSE, TBR-i, TBRI TLX1 3195 ENST00000370196 NM_005521.3 ENST00000370196 NM_005521.3 Yes No 3 Yes No No No Yes No Yes HOX11, TCL3 TLX3 30012 ENST00000296921 NM_021025.2 ENST00000296921 NM_021025.2 Yes No 3 Yes No No No Yes No Yes HOX11L2, RNX TNFRSF17 608 ENST00000053243 NM_001192 ENST00000053243 NM_001192 Yes No 3 Yes No No No Yes No Yes BCM, BCMA, CD269, TNFRSF13A TP53BP1 7158 ENST00000382044 NM_001141980.1 ENST00000382044 NM_001141980.1 No Yes 3 Yes Yes Yes No No No No 53BP1, TDRD30, p202 TRAF3 7187 ENST00000392745 NM_003300.3 ENST00000392745 NM_003300.3 No Yes 3 Yes No Yes No Yes No No CAP-1, CD40bp, CRAF1, LAP1, RNF118 TRAF5 7188 ENST00000261464 NM_001033910.2 ENST00000261464 NM_001033910.2 No Yes 3 Yes No Yes No Yes No No RNF84 TYK2 7297 ENST00000264818 NM_003331.4 ENST00000264818 NM_003331.4 Yes No 3 Yes No Yes No Yes No No JTK1 U2AF2 11338 ENST00000308924 NM_007279.2 ENST00000308924 NM_007279.2 No No 3 Yes No Yes No Yes No No U2AF65 UBR5 51366 ENST00000520539 NM_015902.5 ENST00000520539 NM_015902.5 Yes No 3 Yes No Yes No No No Yes DD5, EDD, EDD1, HYD, KIAA0896 UPF1 5976 ENST00000262803 NM_002911.3 ENST00000262803 NM_002911.3 No No 3 Yes Yes Yes No No No No HUPF1, KIAA0221, NORF1, RENT1, pNORF1, smg-2 USP6 9098 ENST00000250066 NM_004505 ENST00000250066 NM_004505 Yes No 3 Yes No No No Yes No Yes HRP1, TRE17, TRESMCR, Tre-2, Tre2 USP8 9101 ENST00000307179 NM_001128610.2 ENST00000307179 NM_001128610.2 Yes No 3 Yes Yes No No No No Yes HumORF8, KIAA0055, SPG59, UBPY VTCN1 79679 ENST00000369458 NM_024626.3 ENST00000369458 NM_024626.3 No No 3 Yes Yes Yes No No No No B7-H4, B7H4, B7S1, B7x, FLJ22418 XBP1 7494 ENST00000216037 NM_005080.3 ENST00000216037 NM_005080.3 Yes No 3 Yes No Yes No Yes No No XBP2 XIAP 331 ENST00000355640 NM_001167.3 ENST00000355640 NM_001167.3 Yes No 3 Yes Yes Yes No No No No API3, BIRC4, ILP-1, hILP YAP1 10413 ENST00000282441 NM_001130145.2 ENST00000282441 NM_001130145.2 Yes No 3 Yes Yes Yes No No No No YAP65 YES1 7525 ENST00000314574 NM_005433.3 ENST00000314574 NM_005433.3 Yes No 3 Yes Yes Yes No No No No HsT441, Yes, c-yes ZNF217 7764 ENST00000302342 NM_006526 ENST00000302342 NM_006526 Yes No 3 Yes No No Yes Yes No No ZABC1 ABI1 10006 No No 2 No No No No Yes No Yes ABI-1, E3B1, SSH3BP1 ACKR3 57007 ENST00000272928 NM_020311 ENST00000272928 NM_020311 Yes Yes 2 Yes No No No No No Yes CMKOR1, CXCR7, GPR159, RDC1 ACTG1 71 ENST00000331925 NM_001199954.1 ENST00000573283 NM_001199954.1 No Yes 2 Yes No Yes No No No No ACTG, DFNA20, DFNA26 ACVR2A 92 ENST00000241416 NM_001278579 ENST00000241416 NM_001278579 Yes Yes 2 Yes No No No No No Yes ACTRII, ACVR2 ADGRA2 25960 ENST00000412232 NM_032777 ENST00000412232 NM_032777 Yes No 2 Yes No No No Yes No No DKFZp434C211, DKFZp434J0911, FLJ14390, GPR124, KIAA1531, TEM5 AFDN 4301 No No 2 No No No No Yes No Yes AF-6, AF6, MLLT4 AFF1 4299 No No 2 No No No No Yes No Yes AF-4, AF4, MLLT2, PBM1 AGO1 26523 ENST00000373204 NM_012199.2 ENST00000373204 NM_012199.2 Yes No 2 Yes Yes No No No No No EIF2C1, hAGO1 ALB 213 ENST00000295897 NM_000477.5 ENST00000295897 NM_000477.5 No No 2 Yes Yes No No No No No APLNR 187 ENST00000257254 NM_005161.4 ENST00000257254 NM_005161.4 Yes Yes 2 Yes Yes No No No No No AGTRL1, APJ, APJR, FLJ90771 ARFRP1 10139 No No 2 No No No Yes Yes No No ARL18, ARP, Arp1 ARHGEF28 64283 ENST00000426542 NM_001177693.1 ENST00000426542 NM_001177693.1 Yes No 2 Yes No Yes No No No No RGNEF, RIP2, p190RhoGEF ARID3A 1820 ENST00000263620 NM_005224.2 ENST00000263620 NM_005224.2 No Yes 2 Yes No Yes No No No No BRIGHT, DRIL1 ARID3B 10620 ENST00000346246 NM_001307939.1 ENST00000346246 NM_001307939.1 Yes No 2 Yes No Yes No No No No BDP, DRIL2 ARID3C 138715 ENST00000378909 NM_001017363.1 ENST00000378909 NM_001017363.1 No No 2 Yes No Yes No No No No ARID4A 5926 ENST00000355431 NM_002892.3 ENST00000355431 NM_002892.3 No Yes 2 Yes No Yes No No No No RBBP1, RBP-1 ARID4B 51742 ENST00000264183 NM_001206794.1 ENST00000264183 NM_001206794.1 No Yes 2 Yes No Yes No No No No BCAA, BRCAA1, RBP1L1, SAP180 ARID5A 10865 ENST00000357485 NM_212481.1 ENST00000357485 NM_212481.1 No No 2 Yes No Yes No No No No MRF-1, RP11-363D14 ARNT 405 No No 2 No No No No Yes No Yes HIF-1beta, bHLHe2 ATP1A1 476 ENST00000295598 NM_000701 ENST00000295598 NM_000701 Yes Yes 2 Yes No No No No No Yes ATP6AP1 537 ENST00000369762 NM_001183.5 ENST00000369762 NM_001183.5 No No 2 Yes No Yes No No No No 16A, ATP6IP1, ATP6S1, Ac45, CF2, ORF, VATPS1, XAP-3, XAP3 ATP6V1B2 526 ENST00000276390 NM_001693.3 ENST00000276390 NM_001693.3 No Yes 2 Yes No Yes No No No No ATP6B2, HO57 ATXN2 6311 ENST00000377617 NM_002973.3 ENST00000550104 NM_002973.3 No Yes 2 Yes No Yes No No No No ATX2, SCA2, TNRC13 ATXN7 6314 ENST00000295900 NM_000333.3 ENST00000295900 NM_000333.3 Yes No 2 Yes Yes No No No No No ADCAII, OPCA3, SCA7, SGF73 BACH2 60468 ENST00000257749 NM_001170794.1 ENST00000257749 NM_001170794.1 No Yes 2 Yes No Yes No No No No BTBD25 BCL11A 53335 No No 2 No No No No Yes No Yes BCL11A-L, BCL11A-S, BCL11A-XL, CTIP1, EVI9, HBFQTL5, ZNF856 BRD3 8019 ENST00000303407 NM_007371 ENST00000303407 NM_007371 Yes No 2 Yes No No No No No Yes KIAA0043, ORFX, RING3L BRSK1 84446 ENST00000309383 NM_032430 ENST00000309383 NM_032430 No Yes 2 Yes No No No Yes No No KIAA1811 CACNA1D 776 ENST00000350061 NM_001128840 ENST00000350061 NM_001128840 Yes No 2 Yes No No No No No Yes CACH3, CACN4, CACNL1A2, CCHL1A2, Cav1.3 CAD 790 ENST00000264705 NM_001306079 ENST00000264705 NM_001306079 Yes No 2 Yes No No No Yes No No GATD4 CAMTA1 23261 No No 2 No No No No Yes No Yes KIAA0833 CANT1 124583 ENST00000302345 NM_001159772 ENST00000302345 NM_001159772 Yes No 2 Yes No No No No No Yes SCAN-1, SHAPY CARS1 833 No No 2 No No No No Yes No Yes CARS CD28 940 ENST00000324106 NM_006139.3 ENST00000324106 NM_006139.3 Yes No 2 Yes No Yes No No No No CDH11 1009 ENST00000268603 NM_001797 ENST00000268603 NM_001797 Yes No 2 Yes No No No No No Yes CAD11 CDX2 1045 No No 2 No No No No Yes No Yes CDX3 CEP43 11116 No No 2 No No No No Yes No Yes FGFR1OP, FOP CHD2 1106 ENST00000394196 NM_001271 ENST00000394196 NM_001271 No Yes 2 Yes No No No Yes No No DKFZp547I1315, DKFZp686E01200, DKFZp781D1727, FLJ38614 CHD4 1108 ENST00000357008 NM_001273 ENST00000544040 NM_001273 Yes No 2 Yes No No No No No Yes Mi-2b, Mi2-BETA CLTC 1213 No No 2 No No No No Yes No Yes CLTCL2, Hc CMTR2 55783 ENST00000338099 NM_001099642.1 ENST00000338099 NM_001099642.1 No Yes 2 Yes Yes No No No No No AFT, FLJ11171, FTSJD1, MTr2 COL2A1 1280 ENST00000380518 NM_001844 ENST00000380518 NM_001844 No Yes 2 Yes No No No No No Yes AOM, SEDC, STL1 CRBN 51185 ENST00000231948 NM_016302.3 ENST00000231948 NM_016302.3 No Yes 2 Yes No Yes No No No No MRT2, MRT2A CREB1 1385 ENST00000432329 NM_134442.3 ENST00000432329 NM_134442.3 Yes No 2 Yes No No No No No Yes CREB3L1 90993 No No 2 No No No No Yes No Yes OASIS CREB3L2 64764 No No 2 No No No No Yes No Yes BBF2H7, TCAG_1951439 CTR9 9646 ENST00000361367 NM_014633.4 ENST00000361367 NM_014633.4 No Yes 2 Yes Yes No No No No No KIAA0155, SH2BP1, p150TSP CUL4A 8451 ENST00000375440 NM_001008895 ENST00000375440 NM_001008895 Yes No 2 Yes No No Yes No No No CYP19A1 1588 ENST00000260433 NM_000103.3 ENST00000396402 NM_000103.4 Yes No 2 Yes Yes No No No No No ARO, ARO1, CPV1, CYAR, CYP19, P-450AROM, aromatase DDB2 1643 ENST00000256996 NM_000107 ENST00000256996 NM_000107 No Yes 2 Yes No No No No No Yes DDBB, FLJ34321, UV-DDB2, XPE DDX10 1662 No No 2 No No No No Yes No Yes Dbp4, HRH-J8 DDX5 1655 ENST00000225792 NM_004396 ENST00000225792 NM_004396 Yes No 2 Yes No No No No No Yes G17P1, HLR1, p68 DDX6 1656 No No 2 No No No No Yes No Yes HLR2, Rck/p54 ECT2L 345930 ENST00000367682 NM_001077706.2 ENST00000367682 NM_001077706.2 No Yes 2 Yes No No No Yes No No ARHGEF32, C6orf91, FBXO49, LFDH EGR1 1958 ENST00000239938 NM_001964.2 ENST00000239938 NM_001964.2 No Yes 2 Yes No Yes No No No No AT225, G0S30, KROX-24, NGFI-A, TIS8, ZIF-268 EIF3E 3646 ENST00000220849 NM_001568 ENST00000220849 NM_001568 No No 2 Yes No No No No No Yes EIF3S6, INT6, eIF3-p48 ELK4 2005 ENST00000357992 NM_001973 ENST00000357992 NM_001973 Yes No 2 Yes No No No No No Yes ELN 2006 ENST00000252034 NM_001278915 ENST00000252034 NM_000501 Yes No 2 Yes No No No Yes No No SVAS, WBS, WS EML4 27436 No No 2 No No No No Yes No Yes C2orf2, ELP120, ROPP120 EP400 57634 ENST00000389561 NM_015409.3 ENST00000389561 NM_015409.3 No Yes 2 Yes No Yes No No No No CAGH32, DKFZP434I225, KIAA1498, KIAA1818, P400, TNRC12 EPHB4 2050 ENST00000358173 NM_004444 ENST00000358173 NM_004444 Yes No 2 Yes No No Yes No No No HTK, Tyro11 EPOR 2057 ENST00000222139 NM_000121.3 ENST00000222139 NM_000121.3 Yes No 2 Yes No No No Yes No No EPS15 2060 No No 2 No No No No Yes No Yes AF-1P, MLLT5 ERC1 23085 ENST00000360905 NM_178040 ENST00000360905 NM_178040 Yes No 2 Yes No No No No No Yes CAST2, ELKS, KIAA1081, MGC12974, RAB6IP2 ESCO2 157570 ENST00000305188 NM_001017420.2 ENST00000305188 NM_001017420.2 No Yes 2 Yes No Yes No No No No EFO2, RBS ETAA1 54465 ENST00000272342 NM_019002.3 ENST00000272342 NM_019002.3 No Yes 2 Yes Yes No No No No No ETAA16 ETS1 2113 ENST00000319397 NM_005238 ENST00000319397 NM_005238 Yes Yes 2 Yes No No No Yes No No ETS-1, EWSR2, FLJ10768 EXT1 2131 ENST00000378204 NM_000127 ENST00000378204 NM_000127 No Yes 2 Yes No No No No No Yes LGCR, LGS, ttv EZHIP 340602 ENST00000342995 NM_203407.2 ENST00000342995 NM_203407.3 Yes No 2 Yes Yes No No No No No CATACOMB, CXorf67 EZR 7430 No No 2 No No No Yes No No Yes VIL2 FCGR2B 2213 No No 2 No No No No Yes No Yes CD32, CD32B, FCG2, FCGR2 FCRL4 83417 No No 2 No No No No Yes No Yes CD307d, FCRH4, IGFP2, IRTA1 FES 2242 ENST00000328850 NM_002005 ENST00000328850 NM_002005 Yes No 2 Yes No No No No No Yes FPS FOXF1 2294 ENST00000262426 NM_001451.2 ENST00000262426 NM_001451.2 Yes Yes 2 Yes Yes No No No No No FKHL5, FREAC1 FOXO4 4303 No No 2 No No No No Yes No Yes AFX1, MLLT7 FRS2 10818 ENST00000397997 NM_001042555 ENST00000397997 NM_001042555 Yes No 2 Yes No No No Yes No No FRS2A, FRS2alpha, SNT-1 FSTL3 10272 No No 2 No No No No Yes No Yes FLRG, FSRP FURIN 5045 ENST00000268171 NM_001289823.1 ENST00000268171 NM_001289823.1 Yes No 2 Yes No Yes No No No No FUR, PACE, PCSK3 GAB1 2549 ENST00000262994 NM_002039.3 ENST00000262994 NM_002039.3 Yes No 2 Yes Yes No No No No No DFNB26 GAB2 9846 ENST00000361507 NM_080491.2 ENST00000361507 NM_080491.2 Yes No 2 Yes Yes No No No No No KIAA0571 GABRA6 2559 ENST00000274545 NM_000811 ENST00000274545 NM_000811 Yes No 2 Yes No No Yes No No No GAS7 8522 No No 2 No No No No Yes No Yes KIAA0394, MGC1348 GATA4 2626 ENST00000335135 NM_002052 ENST00000335135 NM_002052 No Yes 2 Yes No No Yes No No No GATA6 2627 ENST00000269216 NM_005257 ENST00000269216 NM_005257 Yes No 2 Yes No No Yes No No No GID4 79018 No No 2 No No No Yes Yes No No C17orf39, VID24 GPC3 2719 ENST00000370818 NM_004484 ENST00000370818 NM_004484 Yes No 2 Yes No No No No No Yes DGSX, OCI-5, SDYS, SGB, SGBS, SGBS1 GPHN 10243 No No 2 No No No No Yes No Yes KIAA1385 GRM3 2913 ENST00000361669 NM_000840 ENST00000361669 NM_000840 No No 2 Yes No No Yes No No No GPRC1C, MGLUR3, mGlu3 GTF2I 2969 ENST00000324896 NM_032999.3 ENST00000573035 NM_032999.3 Yes No 2 Yes No Yes No No No No BAP-135, BTKAP1, DIWS, IB291, TFII-I, WBSCR6 H1-5 3009 ENST00000331442 NM_005322.2 ENST00000331442 NM_005322.2 No Yes 2 Yes No Yes No No No No H1F5, H1b, H1s-3, HIST1H1B H2BC8 8339 ENST00000244601 NM_003518 ENST00000541790 NM_003518.3 No No 2 Yes No Yes No No No No H2B.1A, H2B/a, H2BFA, HIST1H2BG H4C9 8294 No No 2 No No No No Yes No Yes H4/m, H4FM, HIST1H4I HERPUD1 9709 No No 2 No No No No Yes No Yes HERP, KIAA0025, Mif1, SUP HEY1 23462 No No 2 No No No No Yes No Yes CHF-2, CHF2, HERP2, HESR-1, HESR1, HRT-1, bHLHb31 HIP1 3092 No No 2 No No No No Yes No Yes HIRA 7290 ENST00000263208 NM_003325 ENST00000263208 NM_003325 No Yes 2 Yes No Yes No No No No DGCR1, TUP1, TUPLE1 HLA-C 3107 ENST00000376228 NM_002117.5 ENST00000376228 NM_002117.5 No Yes 2 Yes Yes No No No No No D6S204, HLA-JY3, PSORS1 HLF 3131 No No 2 No No No No Yes No Yes MGC33822 HOXA13 3209 No No 2 No No No No Yes No Yes HOX1J HOXA9 3205 No No 2 No No No No Yes No Yes HOX1G HOXC11 3227 No No 2 No No No No Yes No Yes HOX3H HOXC13 3229 No No 2 No No No No Yes No Yes HOX3, HOX3G HOXD11 3237 No No 2 No No No No Yes No Yes HOX4F HOXD13 3239 No No 2 No No No No Yes No Yes HOX4I, SPD HSD3B1 3283 ENST00000369413 NM_000862 ENST00000369413 NM_000862 Yes No 2 Yes No No Yes No No No HSD3B, HSDB3, SDR11E1 HSP90AB1 3326 No No 2 No No No No Yes No Yes HSPC2, HSPCB IGH 3492 No No 2 No No No No Yes No Yes IGH@, IGHDY1 IGK 50802 No No 2 No No No No Yes No Yes IGK@ IGL 3535 No No 2 No No No No Yes No Yes IGL@ IL21R 50615 No No 2 No No No No Yes No Yes CD360 IL3 3562 ENST00000296870 NM_000588.3 ENST00000296870 NM_000588.3 Yes No 2 Yes No No No Yes No No IL-3, MCGF, MGC79398, MGC79399, MULTI-CSF IL6ST 3572 ENST00000336909 NM_002184.3 ENST00000336909 NM_002184.3 Yes No 2 Yes No No No No No Yes CD130, GP130, IL-6RB, sGP130 IRF2 3660 ENST00000393593 NM_002199 ENST00000393593 NM_002199 No Yes 2 Yes No No Yes No No No ITK 3702 No No 2 No No No No Yes No Yes EMT, LYK, PSCTK2 KBTBD4 55709 ENST00000395288 NM_016506.5 ENST00000395288 NM_016506.5 No No 2 Yes Yes No No No No No BKLHD4, FLJ10450, HSPC252 KDSR 2531 No No 2 No No No No Yes No Yes DHSR, FVT1, SDR35C1 KEL 3792 ENST00000355265 NM_000420 ENST00000355265 NM_000420 Yes No 2 Yes No No Yes No No No CD238, ECE3 KIF5B 3799 No No 2 No No No No Yes No Yes KNS, KNS1 KLF5 688 ENST00000377687 NM_001730.4 ENST00000377687 NM_001730.4 Yes No 2 Yes Yes No No No No No BTEB2, IKLF KSR2 283455 ENST00000339824 ENST00000339824 NM_173598.6 Yes No 2 Yes No Yes No No No No FLJ25965 LASP1 3927 No No 2 No No No No Yes No Yes Lasp-1, MLN50 LMNA 4000 ENST00000368300 NM_170707 ENST00000368300 NM_170707 Yes No 2 Yes No No No No No Yes CMD1A, HGPS, LGMD1B, LMN1, LMNL1, PRO1 LPP 4026 No No 2 No No No No Yes No Yes LTB 4050 ENST00000376117 NM_002341.1 ENST00000376117 NM_002341.1 Yes Yes 2 Yes No Yes No No No No TNFC, TNFSF3 LTK 4058 ENST00000263800 NM_002344 ENST00000263800 NM_002344 Yes No 2 Yes No No Yes No No No TYK1 LYL1 4066 No No 2 No No No No Yes No Yes bHLHa18 MAD2L2 10459 ENST00000235310 NM_001127325.1 ENST00000235310 NM_001127325.1 Yes Yes 2 Yes Yes No No No No No FANCV, MAD2B, POLZ2, REV7 MAP3K7 6885 ENST00000369329 NM_145331 ENST00000369329 NM_145331 Yes No 2 Yes No No No Yes No No MEKK7, TAK1 MEF2C 4208 ENST00000437473 NM_001193350 ENST00000437473 NM_001193350 Yes Yes 2 Yes No No No Yes No No MERTK 10461 ENST00000295408 NM_006343.2 ENST00000295408 NM_006343.2 Yes No 2 Yes No No Yes No No No RP38, Tyro12, c-Eyk, mer MGAM 8972 ENST00000549489 NM_004668.2 ENST00000549489 NM_004668.2 Yes No 2 Yes No Yes No No No No MKI67 4288 ENST00000368654 NM_002417 ENST00000368654 NM_002417 Yes No 2 Yes No No No Yes No No MIB-1, PPP1R105 MLF1 4291 No No 2 No No No No Yes No Yes MLLT6 4302 No No 2 No No No No Yes No Yes AF17, FLJ23480 MOB3B 79817 ENST00000262244 NM_024761.4 ENST00000262244 NM_024761.4 No Yes 2 Yes No Yes No No No No C9orf35, FLJ13204, MOB1D, MOBKL2B MPEG1 219972 ENST00000361050 NM_001039396.1 ENST00000361050 NM_001039396.1 No No 2 Yes No Yes No No No No MPG1 MRTFA 57591 No No 2 No No No No Yes No Yes BSAC, KIAA1438, MKL, MKL1, MRTF-A MSN 4478 No No 2 No No No No Yes No Yes MUC1 4582 No No 2 No No No No Yes No Yes ADMCKD, ADMCKD1, CD227, MCD, MCKD, MCKD1, PEM, PUM MYH9 4627 No No 2 No No No No Yes No Yes DFNA17, EPSTS, FTNS, MHA, NMHC-II-A, NMMHCA MYO5A 4644 ENST00000399231 NM_000259 ENST00000399231 NM_000259 Yes No 2 Yes No No No No No Yes MYH12, MYO5, MYR12 NADK 65220 ENST00000341426 NM_001198993.1 ENST00000341426 NM_001198993.1 Yes No 2 Yes Yes No No No No No FLJ13052 NCOA2 10499 No No 2 No No No No Yes No Yes KAT13C, NCoA-2, TIF2, bHLHe75 NDRG1 10397 No No 2 No No No No Yes No Yes CAP43, NDR1, RTP, TDD5 NFE2 4778 ENST00000312156 NM_001136023.2 ENST00000312156 NM_001136023.2 Yes No 2 Yes No Yes No No No No NF-E2 NFKB2 4791 No No 2 No No No No Yes No Yes LYT-10, NF-kB2, p49/p100 NIN 51199 No No 2 No No No No Yes No Yes NRG1 3084 ENST00000405005 NM_013964.3 ENST00000405005 NM_013964.3 Yes No 2 Yes No No No No No Yes GGF, HGL, NDF, NRG1-IT2 NUMA1 4926 No No 2 No No No No Yes No Yes PAFAH1B2 5049 No No 2 No No No No Yes No Yes PAX8 7849 ENST00000263334 NM_003466.3 ENST00000348715 NM_003466.3 Yes No 2 Yes No No No No No Yes PBX1 5087 No No 2 No No No No Yes No Yes PCM1 5108 No No 2 No No No No Yes No Yes PTC4 PDE4DIP 9659 No No 2 No No No No Yes No Yes CMYA2, KIAA0454, KIAA0477, MMGL PDS5B 23047 ENST00000315596 NM_015032.3 ENST00000315596 NM_015032.3 No Yes 2 Yes No Yes No No No No APRIN, AS3, CG008, FLJ23236, KIAA0979 PER1 5187 No No 2 No No No No Yes No Yes PER, RIGUI PGBD5 79605 ENST00000525115 NM_001258311.1 ENST00000525115 NM_001258311.1 Yes No 2 Yes Yes No No No No No DKFZp761A0620, FLJ11413 PICALM 8301 No No 2 No No No No Yes No Yes CLTH PIGA 5277 ENST00000333590 NM_002641.3 ENST00000333590 NM_002641.3 No Yes 2 Yes No Yes No No No No GPI3 PIK3C2B 5287 ENST00000367187 NM_002646 ENST00000367187 NM_002646 Yes No 2 Yes No No Yes No No No C2-PI3K, PI3K-C2beta PLAG1 5324 No No 2 No No No No Yes No Yes ZNF912 POU2AF1 5450 No No 2 No No No No Yes No Yes BOB1, OBF1 PPP2R2A 5520 ENST00000380737 NM_002717.3 ENST00000380737 NM_002717.3 No Yes 2 Yes No No Yes No No No B55A, B55alpha, PR52A, PR55A, PR55alpha PRCC 5546 ENST00000271526 NM_005973 ENST00000271526 NM_005973 Yes No 2 Yes No No No No No Yes RCCP1 PRDM16 63976 No No 2 No No No No Yes No Yes KIAA1675, KMT8F, MEL1, MGC166915, PFM13 PRKACA 5566 ENST00000308677 NM_002730.3 ENST00000308677 NM_002730.3 Yes No 2 Yes No No No No No Yes PKACa PRKDC 5591 ENST00000314191 NM_006904.6 ENST00000314191 NM_006904.7 Yes Yes 2 Yes No No No Yes No No DNA-PKC, DNA-PKcs, DNAPK, DNAPKc, DNPK1, HYRC, HYRC1, XRCC7, p350, p460 PRRX1 5396 No No 2 No No No No Yes No Yes PHOX1, PMX1 PSIP1 11168 No No 2 No No No No Yes No Yes DFS70, LEDGF, PSIP2 PTPN1 5770 ENST00000371621 NM_001278618.1 ENST00000371621 NM_001278618.1 Yes Yes 2 Yes No Yes No No No No PTP1B PTPN13 5783 ENST00000411767 NM_080683 ENST00000411767 NM_080683 No Yes 2 Yes No No No No No Yes PTP-BAS, PTP-BL, PTP1E, PTPL1 PTPRO 5800 No No 2 No No No Yes Yes No No GLEPP1, NPHS6, PTP-U2, PTP-oc, PTPU2 RABEP1 9135 No No 2 No No No No Yes No Yes RAB5EP, RABPT5, neurocrescin, rabaptin-5 RANBP2 5903 ENST00000283195 NM_006267 ENST00000283195 NM_006267 Yes No 2 Yes No No No No No Yes ADANE, ANE1, NUP358 RAP1GDS1 5910 No No 2 No No No No Yes No Yes SmgGDS RELN 5649 ENST00000428762 NM_005045.3 ENST00000428762 NM_005045.3 No No 2 Yes No No No Yes No No PRO1598, RL REST 5978 ENST00000309042 NM_001193508.1 ENST00000309042 NM_001193508.1 No Yes 2 Yes Yes No No No No No DFNA27, NRSF, XBR RHOH 399 No No 2 No No No No Yes No Yes ARHH, TTF RNF213 57674 No No 2 No No No No Yes No Yes ALO17, C17orf27, KIAA1554, KIAA1618, MYMY2, NET57 ROBO1 6091 ENST00000464233 NM_002941.3 ENST00000464233 NM_002941.3 No Yes 2 Yes No Yes No No No No DUTT1, FLJ21882, SAX3 RPL22 6146 No No 2 No No No No Yes No Yes EAP, L22 RPL5 6125 ENST00000370321 NM_000969 ENST00000370321 NM_000969 No Yes 2 Yes No No No No No Yes L5, PPP1R135, uL18 RPN1 6184 No No 2 No No No No Yes No Yes RSPO2 340419 No No 2 No No No Yes No No Yes MGC35555 SAMHD1 25939 ENST00000262878 NM_015474.3 ENST00000646673 NM_015474.3 No Yes 2 Yes No Yes No No No No AGS5, HDDC1, MOP-5, Mg11, SBBI88 SCG5 6447 ENST00000300175 NM_001144757.1 ENST00000300175 NM_001144757.1 Yes No 2 Yes Yes No No No No No 7B2, SGNE1, SgV SDC4 6385 No No 2 No No No Yes No No Yes SYND4, amphiglycan, ryudocan SERPINB3 6317 ENST00000283752 NM_006919.2 ENST00000283752 NM_006919.2 Yes Yes 2 Yes Yes No No No No No HsT1196, SCC, SCCA1, T4-A SERPINB4 6318 ENST00000341074 NM_002974.3 ENST00000341074 NM_002974.3 No No 2 Yes Yes No No No No No LEUPIN, PI11, SCCA-2, SCCA2 SETD1A 9739 ENST00000262519 NM_014712.2 ENST00000262519 NM_014712.2 Yes No 2 Yes No Yes No No No No KIAA0339, KMT2F, SET1A, Set1 SETD1B 23067 ENST00000604567 XM_005253858.3 ENST00000604567 XM_005253858.3 No No 2 Yes No Yes No No No No KIAA1076, KMT2G, Set1B SETD3 84193 ENST00000331768 NM_032233.2 ENST00000331768 NM_032233.2 No No 2 Yes No Yes No No No No C14orf154, FLJ23027 SETD4 54093 ENST00000332131 NM_017438.4 ENST00000332131 NM_017438.4 No No 2 Yes No Yes No No No No C21orf18, C21orf27 SETD5 55209 ENST00000402198 NM_001080517.2 ENST00000402198 NM_001080517.2 No No 2 Yes No Yes No No No No FLJ10707 SETD6 79918 ENST00000219315 NM_001160305.1 ENST00000219315 NM_001160305.1 No No 2 Yes No Yes No No No No FLJ21148 SETD7 80854 ENST00000274031 NM_001306199.1 ENST00000274031 NM_001306199.1 No No 2 Yes No Yes No No No No KIAA1717, KMT7, SET7, SET7/9, Set9 SETDB2 83852 ENST00000354234 NM_031915.2 ENST00000317257 NM_031915.2 No Yes 2 Yes No Yes No No No No C13orf4, CLLD8, CLLL8, KMT1F SH3GL1 6455 No No 2 No No No No Yes No Yes CNSA1, EEN, MGC111371, SH3D2B, SH3P8 SLC34A2 10568 No No 2 No No No Yes No No Yes NAPI-3B SLFN11 91607 ENST00000308377 NM_001104587.1 ENST00000308377 NM_001104587.1 No Yes 2 Yes Yes No No No No No FLJ34922 SMARCA1 6594 ENST00000371122 NM_003069 ENST00000371122 NM_003069 Yes Yes 2 Yes No No No Yes No No ISWI, NURF140, SNF2L, SNF2L1, SNF2LB, SWI, hSNF2L SMARCA2 6595 ENST00000349721 NM_001289396.1 ENST00000349721 NM_001289396.1 No Yes 2 Yes Yes No No No No No BAF190, BRM, SNF2, SNF2L2, SNF2LA, SWI2, Sth1p, hBRM, hSNF2a SMG1 23049 ENST00000446231 NM_015092.4 ENST00000446231 NM_015092.4 No Yes 2 Yes No Yes No No No No KIAA0421, LIP SOCS3 9021 ENST00000330871 NM_003955.4 ENST00000330871 NM_003955.4 No Yes 2 Yes No No No Yes No No CIS3, Cish3, SOCS-3, SSI-3 SOX10 6663 ENST00000360880 NM_006941 ENST00000360880 NM_006941 Yes No 2 Yes No No No Yes No No DOM, WS2E, WS4 SP140 11262 ENST00000392045 NM_007237.4 ENST00000392045 NM_007237.4 No Yes 2 Yes No Yes No No No No LYSP100-A, LYSP100-B SPRTN 83932 ENST00000295050 NM_032018.6 ENST00000295050 NM_032018.6 No Yes 2 Yes Yes No No No No No C1orf124, DKFZP547N043, DVC1, Spartan SRSF3 6428 No No 2 No No No No Yes No Yes SFRS3, SRp20 SSX1 6756 No No 2 No No No No Yes No Yes CT5.1 SSX2 6757 No No 2 No No No No Yes No Yes CT5.2a, HD21, HOM-MEL-40, MGC119055, MGC15364, MGC3884, SSX SSX4 6759 No No 2 No No No No Yes No Yes CT5.4 STAG1 10274 ENST00000383202 NM_005862.2 ENST00000383202 NM_005862.2 No Yes 2 Yes No Yes No No No No SA-1, SA1, SCC3A STAT4 6775 ENST00000358470 NM_001243835 ENST00000358470 NM_001243835 Yes No 2 Yes No No No Yes No No TAF1 6872 ENST00000423759 NM_001286074.1 ENST00000423759 NM_004606.5 Yes No 2 Yes No No No Yes No No BA2R, CCG1, CCGS, DYT3, DYT3/TAF1, KAT4, NSCL2, TAFII250 TAF15 8148 No No 2 No No No No Yes No Yes Npl3, RBP56, TAF2N, hTAFII68 TAL2 6887 No No 2 No No No No Yes No Yes bHLHa19 TET3 200424 ENST00000409262 NM_144993 ENST00000409262 NM_144993 No Yes 2 Yes No Yes No No No No MGC22014, hCG_40738 TFG 10342 No No 2 No No No No Yes No Yes FLJ36137, SPG57, TF6 TPM3 7170 No No 2 No No No No Yes No Yes NEM1, TRK TPM4 7171 No No 2 No No No No Yes No Yes TRA 6955 Yes No 2 Yes No No No No No Yes TCRA, TRA@ TRB 6957 Yes No 2 Yes No No No No No Yes TCRB, TRB@ TRD 6964 Yes No 2 Yes No No No No No Yes TCRD, TCRDV1, TRD@ TRG 6965 Yes No 2 Yes No No No Yes No No TCRG, TRG@ TRIM24 8805 No No 2 No No No No Yes No Yes RNF82, TIF1, TIF1A, Tif1a, hTIF1 TRIM27 5987 ENST00000377199 NM_006510 ENST00000377199 NM_006510 Yes No 2 Yes No No No No No Yes RFP, RNF76 TRIP11 9321 No No 2 No No No No Yes No Yes CEV14, GMAP-210, GMAP210, Trip230 TRIP13 9319 ENST00000166345 NM_004237.3 ENST00000166345 NM_004237.3 Yes Yes 2 Yes Yes No No No No No 16E1BP VAV1 7409 ENST00000602142 NM_005428.3 ENST00000602142 NM_005428.3 Yes No 2 Yes No Yes No No No No VAV VAV2 7410 ENST00000371850 NM_001134398.1 ENST00000371850 NM_001134398.1 Yes No 2 Yes No Yes No No No No WIF1 11197 ENST00000286574 NM_007191.4 ENST00000286574 NM_007191.4 No Yes 2 Yes No No No No No Yes WRN 7486 ENST00000298139 NM_000553 ENST00000298139 NM_000553 No Yes 2 Yes No No No No No Yes RECQ3, RECQL2 XPA 7507 ENST00000375128 NM_000380 ENST00000375128 NM_000380 No Yes 2 Yes No No No No No Yes XP1, XPAC XPC 7508 ENST00000285021 NM_004628 ENST00000285021 NM_004628 No Yes 2 Yes No No No No No Yes RAD4, XPCC ZBTB16 7704 No No 2 No No No No Yes No Yes PLZF, ZNF145 ZBTB7A 51341 ENST00000322357 NM_015898 ENST00000322357 NM_015898 Yes Yes 2 Yes No Yes No No No No DKFZp547O146, FBI-1, LRF, ZBTB7, ZNF857A, pokemon ZMYM2 7750 No No 2 No No No No Yes No Yes FIM, RAMP, ZNF198 ZMYM3 9203 ENST00000314425 NM_005096 ENST00000314425 NM_005096 No Yes 2 Yes No No No Yes No No DXS6673E, KIAA0385, ZNF198L2, ZNF261 ZNF384 171017 No No 2 No No No No Yes No Yes CAGH1A, CIZ, NMP4, TNRC1 ZNF521 25925 No No 2 No No No No Yes No Yes EHZF, Evi3 ZNF703 80139 No No 2 No No No Yes Yes No No FLJ14299, NLZ1, ZEPPO1, ZNF503L, Zpo1 ZNRF3 84133 ENST00000544604 NM_001206998.1 ENST00000544604 NM_001206998.1 No Yes 2 Yes Yes No No No No No BK747E2.3, FLJ22057, KIAA1133, RNF203 ABCB1 5243 ENST00000265724 NM_000927.4 ENST00000622132 NM_001348946.2 Yes No 1 Yes No No No No No No ABC20, CD243, CLCS, GP170, MDR1, P-gp, PGY1, p-170 ACSL3 2181 No No 1 No No No No No No Yes FACL3, PRO2194 ACSL6 23305 No No 1 No No No No Yes No No FACL6, KIAA0837, LACS5 ACTB 60 No No 1 No No No No Yes No No ADHFE1 137872 ENST00000396623 NM_144650 ENST00000396623 NM_144650 Yes No 1 Yes No No No No No No FLJ32430 AFF3 3899 No No 1 No No No No No No Yes LAF4, MLLT2-like AJUBA 84962 ENST00000262713 NM_032876.5 ENST00000262713 NM_032876.5 No Yes 1 Yes No No No No No No JUB, MGC15563 ALDH1L2 160428 ENST00000258494 NM_001034173 ENST00000258494 NM_001034173 Yes No 1 Yes No No No No No No FLJ38508, mtFDH ALDH2 217 ENST00000261733 NM_000690 ENST00000261733 NM_000690 No Yes 1 Yes No No No No No No ANKRD26 22852 ENST00000376087 NM_001256053 ENST00000376087 NM_001256053 Yes No 1 Yes No No No No No No KIAA1074, THC2 APH1A 51107 No No 1 No No No No Yes No No APH-1A, CGI-78 APOBEC3B 9582 No No 1 No No No No No No Yes FLJ21201, PHRBNL ASMTL 8623 No No 1 No No No No Yes No No ASPSCR1 79058 No No 1 No No No No No No Yes ASPL, ASPS, TUG, UBXD9, UBXN9 ATG5 9474 No No 1 No No No No Yes No No APG5, APG5L, hAPG5 ATP2B3 492 No No 1 No No No No No No Yes CFAP39, CLA2, PMCA3, SCAX1 ATRIP 84126 ENST00000320211 NM_130384 ENST00000320211 NM_130384 No Yes 1 Yes No No No No No No FLJ12343, MGC20625, MGC21482, MGC26740 BAALC 79870 ENST00000297574 null ENST00000297574 null Yes No 1 Yes No No No No No No BAX 581 No No 1 No No No No No No Yes BCL2L4 BCL9L 283149 No No 1 No No No No No No Yes B9L, Bcl9-2, DLNB11 BTLA 151888 No No 1 No No No No Yes No No BTLA1, CD272 BUB1B 701 No No 1 No No No No No No Yes BUBR1, Bub1A, MAD3L, SSK1 CBLB 868 No No 1 No No No No No No Yes Cbl-b, RNF56 CBLC 23624 No No 1 No No No No No No Yes CBL-3, CBL-SL, RNF57 CCDC6 8030 No No 1 No No No No No No Yes D10S170, H4, TPC, TST1 CCN6 8838 No No 1 No No No No Yes No No WISP-3, WISP3 CCNB1IP1 57820 No No 1 No No No No No No Yes C14orf18, HEI10 CCNB3 85417 ENST00000276014 NM_033031.2 ENST00000276014 NM_033031.2 Yes No 1 Yes No No No No No No CCT6B 10693 No No 1 No No No No Yes No No Cctz2, TSA303 CD19 930 ENST00000324662 NM_001770 ENST00000538922 NM_001770 Yes No 1 Yes No No No No No No CD36 948 No No 1 No No No No Yes No No GP3B, GP4, GPIV, SCARB3 CDH2 1000 ENST00000269141 NM_001792 ENST00000269141 NM_001792 Yes No 1 Yes No No No No No No CD325, CDHN, NCAD CDH4 1002 ENST00000360469 NM_001794 ENST00000614565 NM_001794 Yes No 1 Yes No No No No No No CHCHD7 79145 No No 1 No No No No No No Yes COX23, MGC2217 CHIC2 26511 No No 1 No No No No Yes No No BTL CHN1 1123 No No 1 No No No No Yes No No ARHGAP2, CHN, DURS2, n-chimerin CHTF8 54921 ENST00000398235 NM_001039690 ENST00000398235 NM_001039690 No Yes 1 Yes No No No No No No CTF8, FLJ20400 CILK1 22858 No No 1 No No No No Yes No No ICK, KIAA0936, LCK2, MGC46090 CKS1B 1163 No No 1 No No No No Yes No No ckshs1 CLIP1 6249 No No 1 No No No No No No Yes CLIP-170, CLIP170, CYLN1, RSN CLP1 10978 No No 1 No No No No Yes No No HEAB, hClp1 CNBP 7555 No No 1 No No No No No No Yes CNBP1, DM2, RNF163, ZCCHC22, ZNF9 CNOT3 4849 No No 1 No No No No No No Yes KIAA0691, LENG2, NOT3, NOT3H CPS1 1373 No No 1 No No No No Yes No No CRTC1 23373 No No 1 No No No No No No Yes FLJ14027, KIAA0616, MECT1, TORC1 CRTC3 64784 No No 1 No No No No No No Yes FLJ21868 CSF1 1435 No No 1 No No No No Yes No No M-CSF, MCSF, MGC31930 CTDNEP1 23399 ENST00000318988 NM_015343.4 ENST00000574322 NM_001143775.2 No Yes 1 Yes No No No No No No DULLARD, HSA011916, NET56 CYP17A1 1586 No No 1 No No No Yes No No No CPT7, CYP17, P450C17, S17AH DAZAP1 26528 ENST00000233078 NM_018959.3 ENST00000233078 NM_018959.3 No No 1 Yes No No No No No No MGC19907 DCTN1 1639 No No 1 No No No No No No Yes DDR1 780 No No 1 No No No Yes No No No CAK, CD167, EDDR1, NEP, NTRK4, PTK3A, RTK6 DDX4 54514 ENST00000505374 NM_024415.2 ENST00000505374 NM_024415.2 Yes No 1 Yes No No No No No No VASA DDX41 51428 ENST00000507955 NM_016222.2 ENST00000330503 NM_016222.4 No Yes 1 Yes No No No No No No ABS, MGC8828 DKK1 22943 ENST00000373970 NM_012242.2 ENST00000373970 NM_012242.2 No No 1 Yes No No No No No No DKK-1, SK DKK2 27123 ENST00000285311 NM_014421.2 ENST00000285311 NM_014421.2 No No 1 Yes No No No No No No DKK3 27122 ENST00000326932 NM_001018057.1 ENST00000326932 NM_001018057.1 No No 1 Yes No No No No No No REIC DKK4 27121 ENST00000220812 NM_014420.2 ENST00000220812 NM_014420.2 No No 1 Yes No No No No No No DPYD 1806 ENST00000370192 NM_000110 ENST00000370192 NM_000110 No No 1 Yes No No No No No No DHPDHase, DPD DUSP2 1844 No No 1 No No No No Yes No No PAC-1 DUSP9 1852 No No 1 No No No No Yes No No MKP-4, MKP4 ECSIT 51295 ENST00000270517 NM_016581 ENST00000270517 NM_016581 Yes No 1 Yes No No No No No No SITPEC EIF2B1 1967 ENST00000424014 NM_001414 ENST00000424014 NM_001414 No Yes 1 Yes No No No No No No EIF-2B, EIF-2Balpha, EIF2B, EIF2BA ELL2 22936 ENST00000237853 NM_012081.5 ENST00000237853 NM_012081.6 Yes Yes 1 Yes No No No No No No MRCCAT1 ELP2 55250 No No 1 No No No No Yes No No FLJ10879, STATIP1, StIP ERCC1 2067 ENST00000300853 NM_001983 ENST00000300853 NM_001983 No Yes 1 Yes No No No No No No RAD10 EXOSC6 118460 No No 1 No No No No Yes No No EAP4, MTR3, Mtr3p, hMtr3p, p11 EXT2 2132 No No 1 No No No No No No Yes SOTV FAF1 11124 No No 1 No No No No Yes No No CGI-03, HFAF1s, UBXD12, UBXN3A, hFAF1 FANCI 55215 ENST00000310775 NM_001113378.1 ENST00000310775 NM_001113378.2 No No 1 Yes No No No No No No FLJ10719, KIAA1794 FANCM 57697 ENST00000267430 NM_020937 ENST00000267430 NM_020937 No Yes 1 Yes No No No No No No FAAP250, KIAA1596 FAT4 79633 No No 1 No No No No No No Yes CDHF14, CDHR11, FAT-J FBXO31 79791 No No 1 No No No No Yes No No FBXW2 26190 ENST00000608872 NM_012164 ENST00000608872 NM_012164 No No 1 Yes No No No No No No FBW2, Fwd2, Md6 FGF1 2246 ENST00000337706 NM_000800 ENST00000337706 NM_000800 Yes No 1 Yes No No No No No No AFGF, ECGF, ECGF-beta, ECGFA, ECGFB, FGF-alpha, FGFA, GLIO703, HBGF1 FGF12 2257 No No 1 No No No Yes No No No FGF12B, FHF1 FGF2 2247 ENST00000608478 ENST00000644866 NM_001361665.2 Yes No 1 Yes No No No No No No FGFB FGF5 2250 ENST00000312465 NM_004464 ENST00000312465 NM_004464 Yes No 1 Yes No No No No No No FGF7 2252 ENST00000267843 NM_002009 ENST00000267843 NM_002009 Yes No 1 Yes No No No No No No KGF FGF8 2253 ENST00000344255 NM_033164 ENST00000344255 NM_033164 Yes No 1 Yes No No No No No No AIGF FGF9 2254 ENST00000382353 NM_002010 ENST00000382353 NM_002010 Yes No 1 Yes No No No No No No FIP1L1 81608 No No 1 No No No No No No Yes DKFZp586K0717, FIP1 FLYWCH1 84256 No No 1 No No No No Yes No No DKFZp761A132 FNBP1 23048 No No 1 No No No No Yes No No FBP17, KIAA0554 FOLH1 2346 ENST00000256999 NM_004476 ENST00000256999 NM_004476 Yes No 1 Yes No No No No No No FOLH, GCPII, NAALAD1, NAALAdase, PSM, PSMA FOLR1 2348 ENST00000312293 NM_000802 ENST00000312293 NM_000802 Yes No 1 Yes No No No No No No FOLR, FRα FOXN4 121643 ENST00000299162 NM_213596 ENST00000299162 NM_213596 Yes No 1 Yes No No No No No No FSTL1 11167 ENST00000295633 NM_007085 ENST00000295633 NM_007085 Yes No 1 Yes No No No No No No FRP, FSL1, OCC-1, OCC1, tsc36 FZR1 51343 ENST00000395095 NM_001136198 ENST00000395095 NM_001136198 Yes Yes 1 Yes No No No No No No CDC20C, FZR, FZR2, HCDH, HCDH1, KIAA1242 GADD45B 4616 No No 1 No No No No Yes No No DKFZP566B133, GADD45BETA, MYD118 GMPS 8833 No No 1 No No No No Yes No No GATD7 GOLGA5 9950 No No 1 No No No No No No Yes GOLIM5, golgin-84, ret-II, rfg5 GOPC 57120 No No 1 No No No No No No Yes CAL, GOPC1, PIST, dJ94G16.2 GRB7 2886 ENST00000309156 NM_001030002 ENST00000309156 NM_001030002 Yes No 1 Yes No No No No No No GTSE1 51512 No No 1 No No No No Yes No No B99, GTSE-1 H3C15 333932 ENST00000403683 NM_001005464.2 ENST00000403683 NM_001005464.2 No No 1 Yes No No No No No No H3/n, H3/o, HIST2H3A H3P6 440926 ENST00000316450 null ENST00000369387 No No 1 Yes No No No No No No H3F3AP4 H4C6 8361 ENST00000244537 NM_003540 No No 1 Yes No No No No No No H4/c, H4FC, HIST1H4F HDAC2 3066 ENST00000519065 NM_001527.3 ENST00000519065 NM_001527.3 Yes No 1 Yes No No No No No No KDAC2, YAF1 HFE 3077 ENST00000357618 NM_000410 ENST00000357618 NM_000410 Yes No 1 Yes No No No No No No HFE1 HNF1B 6928 ENST00000225893 NM_001165923 ENST00000617811 NM_000458 No No 1 Yes No No No No No No HNF1beta, LFB3, MODY5, TCF2, VHNF1 HNRNPA2B1 3181 No No 1 No No No No No No Yes HNRPA2B1 HOOK3 84376 No No 1 No No No No No No Yes HOXA3 3200 No No 1 No No No No Yes No No HOX1E HSD17B2 3294 ENST00000199936 NM_002153 ENST00000199936 NM_002153 No Yes 1 Yes No No No No No No HSD17, SDR9C2 HTATIP2 10553 ENST00000421577 NM_001098521 ENST00000421577 NM_001098521 No Yes 1 Yes No No No No No No CC3, FLJ26963, SDR44U1, TIP30 ID1 3397 ENST00000376112 NM_002165 ENST00000376112 NM_002165 Yes No 1 Yes No No No No No No bHLHb24, dJ857M17.1.2 IFNAR1 3454 ENST00000270139 NM_000629 ENST00000270139 NM_000629 No No 1 Yes No No No No No No IFNAR, IFRC IKBKB 3551 No No 1 No No No No No No Yes IKK-beta, IKK2, IKKB, NFKBIKB IKZF2 22807 No No 1 No No No No Yes No No Helios, ZNFN1A2 IL2 3558 No No 1 No No No No No No Yes IL-2, TCGF ING1 3621 ENST00000375774 NM_005537 ENST00000375774 NM_005537 No Yes 1 Yes No No No No No No p24ING1c, p33, p33ING1, p33ING1b, p47, p47ING1a INPP5D 3635 No No 1 No No No No Yes No No SHIP, SHIP1, hp51CN INTS6 26512 ENST00000311234 NM_012141 ENST00000311234 NM_012141 No Yes 1 Yes No No No No No No DBI-1, DDX26, DDX26A, DICE1, HDB, Notchl2 IQGAP1 8826 ENST00000268182 NM_003870 ENST00000268182 NM_003870 Yes No 1 Yes No No No No No No HUMORFA01, KIAA0051, p195 IRS4 8471 No No 1 No No No No No No Yes IRS-4, PY160 ITPKB 3707 ENST00000272117 NM_002221 ENST00000272117 NM_002221 Yes No 1 Yes No No No No No No IP3-3KB, IP3KB JAZF1 221895 No No 1 No No No No Yes No No DKFZp761K2222, TIP27, ZNF802 KAT6B 23522 No No 1 No No No No No No Yes MOZ2, MYST4, Morf, ZC2HC6B, qkf, querkopf KAT7 11143 ENST00000259021 NM_007067 ENST00000259021 NM_007067 Yes No 1 Yes No No No No No No HBO1, HBOA, MYST2, ZC2HC7 KCNJ5 3762 No No 1 No No No No No No Yes GIRK4, KATP1, Kir3.4, LQT13 KDM2B 84678 No No 1 No No No No Yes No No CXXC2, FBXL10, Fbl10, JHDM1B, PCCX2 KDM4C 23081 No No 1 No No No No Yes No No GASC1, JMJD2C, KIAA0780, TDRD14C KDM5D 8284 ENST00000317961 NM_004653 ENST00000317961 NM_004653 Yes Yes 1 Yes No No No No No No HY, HYA, JARID1D, KIAA0234, SMCY KLF2 10365 ENST00000248071 NM_016270.2 ENST00000248071 NM_016270.2 No Yes 1 Yes No No No No No No LKLF KLF3 51274 ENST00000261438 NM_016531.5 ENST00000261438 NM_016531.5 No Yes 1 Yes No No No No No No BKLF KLF6 1316 No No 1 No No No No No No Yes BCD1, COPEB, CPBP, GBF, PAC1, ST12, Zf9 KLK2 3817 No No 1 No No No No No No Yes KNL1 57082 No No 1 No No No No No No Yes AF15Q14, CASC5, CT29, D40, KIAA1570, MCPH4, PPP1R55, Spc7, hKNL-1, hSpc105 KTN1 3895 No No 1 No No No No No No Yes KIAA0004, KNT LARP4B 23185 ENST00000316157 NM_015155.2 ENST00000316157 NM_015155.2 No No 1 Yes No No No No No No KIAA0217, LARP5 LCP1 3936 No No 1 No No No No Yes No No CP64, L-PLASTIN, LC64P, PLS2 LGR5 8549 ENST00000266674 NM_003667 ENST00000266674 NM_003667 Yes No 1 Yes No No No No No No FEX, GPR49, GPR67, HG38 LIFR 3977 No No 1 No No No No No No Yes CD118 LRIG3 121227 No No 1 No No No No No No Yes FLJ90440, KIAA3016 LRP5 4041 ENST00000294304 NM_001291902.1 ENST00000294304 NM_001291902.1 Yes Yes 1 Yes No No No No No No BMND1, EVR1, EVR4, LR3, LRP7, OPPG, OPS, OPTA1, VBCH2 LRP6 4040 ENST00000261349 NM_002336.2 ENST00000261349 NM_002336.2 Yes No 1 Yes No No No No No No ADCAD2 LRRK2 120892 No No 1 No No No No Yes No No DKFZp434H2111, FLJ45829, PARK8, RIPK7, ROCO2 MAGED1 9500 No No 1 No No No No Yes No No DLXIN-1, NRAGE MAL2 114569 ENST00000276681 NM_052886.2 ENST00000614891 NM_052886.3 No Yes 1 Yes No No No No No No MAML2 84441 No No 1 No No No No No No Yes KIAA1819, MAM3 MAP3K21 84451 ENST00000366624 NM_032435 ENST00000366624 NM_032435 Yes No 1 Yes No No No No No No KIAA1804, MLK4 MAP3K6 9064 No No 1 No No No No Yes No No ASK2, MAPKKK6, MEKK6 MAP4K4 9448 ENST00000347699 NM_001242559 ENST00000347699 NM_001242559 Yes No 1 Yes No No No No No No FLH21957, HGK, NIK MBD4 8930 ENST00000249910 NM_003925 ENST00000249910 NM_003925 No Yes 1 Yes No No No No No No MBD6 114785 ENST00000355673 NM_052897.3 ENST00000355673 NM_052897.3 No Yes 1 Yes No No No No No No KIAA1887 MDS2 259283 No No 1 No No No No Yes No No MEF2D 4209 ENST00000348159 NM_005920.3 ENST00000348159 NM_005920.3 Yes No 1 Yes No No No No No No MIB1 57534 No No 1 No No No No Yes No No DIP-1, KIAA1323, MIB, ZZANK2, ZZZ6 MIDEAS 91748 ENST00000286523 NM_001043318.2 ENST00000286523 NM_001043318.2 No Yes 1 Yes No No No No No No C14orf117, C14orf43, ELMSAN1, LSR68 MKNK1 8569 No No 1 No No No Yes No No No MNK1 MLH3 27030 ENST00000355774 NM_001040108 ENST00000355774 NM_001040108 No Yes 1 Yes No No No No No No MLLT11 10962 No No 1 No No No No No No Yes AF1Q MNX1 3110 No No 1 No No No No Yes No No HB9, HLXB9, HOXHB9, SCRA1 MS4A1 931 ENST00000345732 NM_021950 ENST00000345732 NM_021950 No No 1 Yes No No No No No No B1, Bp35, CD20, FMC7 MTCP1 4515 No No 1 No No No No No No Yes P13MTCP1, TCL1C, p8MTCP1 MTHFD2 10797 ENST00000394053 NM_006636 ENST00000394053 NM_006636 Yes No 1 Yes No No No No No No MYBL1 4603 ENST00000522677 NM_001080416 ENST00000522677 NM_001080416 Yes No 1 Yes No No No No No No A-myb, AMYB MYO18A 399687 No No 1 No No No No Yes No No KIAA0216, MysPDZ NAB2 4665 No No 1 No No No No No No Yes MADER NACA 4666 No No 1 No No No No Yes No No NACA1 NBEAP1 606 No No 1 No No No No Yes No No BCL8, BCL8A NCOA1 8648 No No 1 No No No No No No Yes F-SRC-1, KAT13A, NCoA-1, RIP160, bHLHe74 NCOA4 8031 No No 1 No No No No No No Yes ARA70, DKFZp762E1112, ELE1, PTC3, RFG NFATC2 4773 No No 1 No No No No No No Yes NF-ATP, NFAT1, NFATp NFIB 4781 No No 1 No No No No No No Yes NFI-RED, NFIB2, NFIB3 NFKBIE 4794 No No 1 No No No No No No Yes IKBE NHERF1 9368 ENST00000262613 NM_004252 ENST00000262613 NM_004252 Yes Yes 1 Yes No No No No No No EBP50, NHERF, SLC9A3R1 NOD1 10392 No No 1 No No No No Yes No No CARD4, CLR7.1, NLRC1 NONO 4841 No No 1 No No No No No No Yes NMT55, NRB54, P54, P54NRB, PPP1R114 NQO1 1728 ENST00000320623 NM_000903 ENST00000320623 NM_000903 Yes No 1 Yes No No No No No No DHQU, DIA4, NMOR1, QR1 NUTM2A 728118 No No 1 No No No No Yes No No FAM22A NUTM2B 729262 No No 1 No No No No No No Yes FAM22B, bA119F19.1 NUTM2D 728130 No No 1 No No No No No No Yes FAM22D OLIG2 10215 No No 1 No No No No No No Yes BHLHB1, OLIGO2, PRKCBP2, RACK17, bHLHe19 OMD 4958 No No 1 No No No No Yes No No SLRR2C, osteoadherin ONECUT2 9480 ENST00000491143 NM_004852 ENST00000491143 NM_004852 Yes No 1 Yes No No No No No No OC-2 PAG1 55824 No No 1 No No No No Yes No No PAG PAK3 5063 No No 1 No No No No Yes No No MRX30, MRX47, bPAK, hPAK3 PARP2 10038 No No 1 No No No Yes No No No ADPRTL2, ARTD2 PARP3 10039 No No 1 No No No Yes No No No ADPRT3, ADPRTL3, ARTD3, IRT1, hPARP-3, pADPRT-3 PASK 23178 No No 1 No No No No Yes No No KIAA0135, PASKIN, STK37 PATZ1 23598 No No 1 No No No No No No Yes MAZR, PATZ, RIAZ, ZBTB19, ZNF278, ZSG, dJ400N23 PC 5091 No No 1 No No No No Yes No No PCB PCLO 27445 No No 1 No No No No Yes No No ACZ, DKFZp779G1236, KIAA0559 PCSK7 9159 No No 1 No No No No Yes No No LPC, PC7, PC8, SPC7 PDCD11 22984 No No 1 No No No No Yes No No ALG-4, KIAA0185, NFBP, RRP5 PHF1 5252 No No 1 No No No No Yes No No MTF2L2, PCL1, TDRD19C PHF19 26147 ENST00000373896 NM_015651 ENST00000373896 NM_015651 Yes No 1 Yes No No No No No No DKFZP727G051, MTF2L1, PCL3, TDRD19B PHLPP1 23239 ENST00000262719 NM_194449 ENST00000262719 NM_194449 No Yes 1 Yes No No No No No No KIAA0606, PHLPP, PLEKHE1, PPM3A, SCOP PHLPP2 23035 ENST00000568954 NM_015020 ENST00000568954 NM_015020 No Yes 1 Yes No No No No No No KIAA0931, PHLPPL, PPM3B POLG 5428 ENST00000268124 NM_001126131 ENST00000268124 NM_001126131 No No 1 Yes No No No No No No POLG1, POLGA POLQ 10721 No No 1 No No No No No No Yes POU2F2 5452 ENST00000526816 NM_001207025 ENST00000526816 NM_001207025 Yes No 1 Yes No No No No No No OTF2 POU3F2 5454 ENST00000328345 NM_005604 ENST00000328345 NM_005604 Yes No 1 Yes No No No No No No BRN2, OCT7, OTF7, POUF3 POU3F4 5456 ENST00000373200 NM_000307 ENST00000644024 NM_000307 Yes No 1 Yes No No No No No No BRN4, DFN3, DFNX2, OTF9 POU5F1 5460 No No 1 No No No No No No Yes MGC22487, OTF3, Oct4 PPFIBP1 8496 No No 1 No No No No No No Yes SGT2, hSGT2, hSgt2p PPP1CB 5500 No No 1 No No No No Yes No No MP, PP-1B, PP1B, PP1beta, PP1c, PPP1beta PRF1 5551 No No 1 No No No No No No Yes HPLH2, PFP PRPF8 10594 ENST00000304992 NM_006445 ENST00000304992 NM_006445 No Yes 1 Yes No No No No No No PRPC8, Prp8, RP13, SNRNP220, hPrp8 PRSS1 5644 ENST00000311737 NM_002769.4 ENST00000311737 NM_002769.4 No No 1 Yes No No No No No No TRY1 PRSS8 5652 No No 1 No No No No Yes No No PSMB2 5690 ENST00000373237 NM_002794 ENST00000373237 NM_002794 Yes No 1 Yes No No No No No No HC7-I PTK6 5753 No No 1 No No No No No No Yes BRK PTK7 5754 No No 1 No No No No Yes No No CCK4 PTPN14 5784 ENST00000366956 NM_005401 ENST00000366956 NM_005401 No Yes 1 Yes No No No No No No PEZ PTPN6 5777 No No 1 No No No No Yes No No HCPH, PTP-1C, SHP-1, SHP1 PTPRB 5787 No No 1 No No No No No No Yes PTPB PTPRC 5788 No No 1 No No No No No No Yes CD45, T200 PTPRK 5796 No No 1 No No No No No No Yes R-PTP-kappa PUM1 9698 ENST00000257075 NM_014676 ENST00000257075 NM_014676 No No 1 Yes No No No No No No KIAA0099, PUMH1 RAD17 5884 ENST00000380774 NM_133339 ENST00000380774 NM_133339 No Yes 1 Yes No No No No No No CCYC, RAD17Sp, Rad24 RALGDS 5900 No No 1 No No No No Yes No No RGDS, RGF, RalGEF RASGEF1A 221002 No No 1 No No No No Yes No No CG4853, FLJ37817 REV3L 5980 ENST00000358835 NM_002912 ENST00000358835 NM_002912 Yes No 1 Yes No No No No No No POLZ, REV3 RIOK2 55781 Yes No 1 Yes No No No No No No FLJ11159 RMI2 116028 No No 1 No No No No No No Yes BLAP18, C16orf75, MGC24665 RNASEH2A 10535 ENST00000221486 NM_006397 ENST00000221486 NM_006397 Yes No 1 Yes No No No No No No RNASEHI, RNHIA, RNHL RNASEH2B 79621 ENST00000336617 NM_024570 ENST00000336617 NM_024570 No Yes 1 Yes No No No No No No AGS2, DLEU8, FLJ11712 RNF217-AS1 7955 No No 1 No No No No Yes No No STL RPL10 6134 No No 1 No No No No No No Yes DXS648, DXS648E, FLJ23544, L10, QM RPS15 6209 ENST00000592588 NM_001018 ENST00000593052 NM_001308226 Yes No 1 Yes No No No No No No MGC111130, S15 RSPO3 84870 No No 1 No No No No No No Yes FLJ14440, THSD2 RUNX2 860 No No 1 No No No No Yes No No AML3, CBFA1, CCD, CCD1, PEBP2A1, PEBP2aA1 S1PR2 9294 No No 1 No No No No Yes No No AGR16, DFNB68, EDG5, Gpcr13, H218 SALL4 57167 No No 1 No No No No No No Yes ZNF797, dJ1112F19.1 SAMD9 54809 ENST00000379958 NM_017654.3 ENST00000379958 NM_017654.4 No No 1 Yes No No No No No No C7orf5, FLJ20073, KIAA2004 SAMD9L 219285 ENST00000318238 NM_152703.2 ENST00000318238 NM_152703.5 No No 1 Yes No No No No No No C7orf6, FLJ39885, KIAA2005 SBDS 51119 No No 1 No No No No No No Yes CGI-97, FLJ10917, SDO1, SWDS SEC31A 22872 No No 1 No No No No Yes No No ABP125, ABP130, KIAA0905, SEC31L1 SEPTIN5 5413 No No 1 No No No No Yes No No HCDCREL-1, PNUTL1, SEPT5 SEPTIN6 23157 No No 1 No No No No Yes No No KIAA0128, MGC16619, MGC20339, SEPT6 SEPTIN9 10801 No No 1 No No No No Yes No No AF17q25, KIAA0991, MSF, MSF1, PNUTL4, SEPT9, SeptD1 SERP2 387923 No No 1 No No No No Yes No No C13orf21, bA269C23.1 SF3B2 10992 ENST00000322535 NM_006842 ENST00000322535 NM_006842 Yes No 1 Yes No No No No No No Cus1, SAP145, SF3b1, SF3b145 SFPQ 6421 No No 1 No No No No No No Yes PPP1R140 SFRP1 6422 ENST00000220772 NM_003012.4 ENST00000220772 NM_003012.4 No Yes 1 Yes No No No No No No FRP-1, SARP2 SFRP2 6423 ENST00000274063 NM_003013.2 ENST00000274063 NM_003013.2 Yes Yes 1 Yes No No No No No No FRP-2, SARP1, SDF-5 SFRP4 6424 No No 1 No No No No No No Yes FRP-4, FRPHE, FRZB-2, frpHE SIX1 6495 No No 1 No No No No No No Yes DFNA23 SLC1A2 6506 No No 1 No No No No Yes No No EAAT2, GLT-1 SLC45A3 85414 No No 1 No No No No No No Yes IPCA-2, IPCA-6, IPCA-8, PCANAP2, PCANAP6, PCANAP8, prostein SLIT2 9353 ENST00000504154 NM_004787 ENST00000504154 NM_004787 No No 1 Yes No No No No No No SLIL3, Slit-2 SLIT3 6586 ENST00000519560 NM_003062 ENST00000519560 NM_003062 No Yes 1 Yes No No No No No No MEGF5, SLIL2, Slit-3, slit2 SNCAIP 9627 No No 1 No No No Yes No No No SYPH1 SND1 27044 No No 1 No No No No No No Yes TDRD11, p100 SNX29 92017 No No 1 No No No No Yes No No FLJ12363, RUNDC2A SOCS2 8835 No No 1 No No No No Yes No No CIS2, Cish2, SOCS-2, SSI-2, SSI2, STATI2 SQSTM1 8878 ENST00000389805 NM_003900 ENST00000389805 NM_003900 Yes No 1 Yes No No No No No No A170, OSIL, PDB3, p62B SRP72 6731 ENST00000342756 NM_006947 ENST00000642900 NM_006947 Yes No 1 Yes No No No No No No SS18L1 26039 No No 1 No No No No No No Yes CREST, KIAA0693 STAT1 6772 ENST00000361099 NM_007315.3 ENST00000361099 NM_007315.3 No No 1 Yes No No No No No No ISGF-3, STAT91 STAT2 6773 ENST00000314128 NM_005419.3 ENST00000314128 NM_005419.3 No No 1 Yes No No No No No No STAT113 STIL 6491 No No 1 No No No No No No Yes MCPH7, SIL STRN 6801 No No 1 No No No No No No Yes PPP2R6A, STRN1 SZT2 23334 ENST00000562955 NM_015284 ENST00000562955 NM_015284 No No 1 Yes No No No No No No C1orf84, FLJ10387, FLJ34502, KIAA0467, KICS1, RP11-506B15.1, SZT2A, SZT2B TCEA1 6917 No No 1 No No No No No No Yes GTF2S, SII, TCEA, TF2S, TFIIS TCF12 6938 No No 1 No No No No No No Yes HEB, HTF4, HsT17266, bHLHb20, p64 TCL1B 9623 ENST00000340722 NM_004918.3 ENST00000340722 NM_004918.3 Yes No 1 Yes No No No No No No TML1 TEC 7006 No No 1 No No No No Yes No No PSCTK4 TERC 7012 No No 1 No No No Yes No No No SCARNA19, TRC3, hTR TFEB 7942 No No 1 No No No No No No Yes TCFEB, bHLHe35 TFPT 29844 No No 1 No No No No Yes No No FB1, INO80F, amida TFRC 7037 No No 1 No No No No Yes No No CD71, TFR1, p90 TIGAR 57103 ENST00000179259 NM_020375 ENST00000179259 NM_020375 Yes No 1 Yes No No No No No No C12orf5 TIPARP 25976 No No 1 No No No Yes No No No ARTD14, DDF1, DKFZP434J214, DKFZp686N0351, PARP-1, PARP-7, PARP7, RM1, pART14 TLE1 7088 ENST00000376499 NM_001303103.1 ENST00000376499 NM_001303103.1 No No 1 Yes No No No No No No ESG1, GRG1 TLE2 7089 ENST00000262953 NM_003260.4 ENST00000262953 NM_003260.4 No No 1 Yes No No No No No No ESG, ESG2, FLJ41188, GRG2 TLE3 7090 ENST00000558939 NM_005078.3 ENST00000558939 NM_005078.3 No No 1 Yes No No No No No No ESG3, GRG3, HsT18976, KIAA1547 TLE4 7091 ENST00000376552 NM_007005.4 ENST00000376552 NM_007005.4 No No 1 Yes No No No No No No E(spl), GRG4 TLL2 7093 No No 1 No No No No Yes No No TMEM30A 55754 No No 1 No No No No Yes No No C6orf67, CDC50A, FLJ10856 TMSB4XP8 7117 No No 1 No No No No Yes No No TMSL3 TNFRSF11A 8792 No No 1 No No No No Yes No No CD265, FEO, LOH18CR1, PDB2, RANK TNFSF13 8741 ENST00000338784 NM_003808 ENST00000338784 NM_003808 Yes No 1 Yes No No No No No No APRIL, CD256 TONSL 4796 ENST00000409379 NM_013432 ENST00000409379 NM_013432 No No 1 Yes No No No No No No IKBR, NFKBIL2 TOP2A 7153 ENST00000423485 NM_001067 ENST00000423485 NM_001067 Yes No 1 Yes No No No No No No TOP2 TPR 7175 No No 1 No No No No No No Yes TRIB3 57761 ENST00000217233 NM_001301188 ENST00000217233 NM_001301188 Yes No 1 Yes No No No No No No C20orf97, dJ1103G7.3 TRIM33 51592 No No 1 No No No No No No Yes FLJ11429, KIAA1113, PTC7, RFG7, TF1G, TIF1G, TIF1GAMMA, TIFGAMMA TRRAP 8295 No No 1 No No No No No No Yes PAF400, TR-AP, Tra1 TTL 150465 No No 1 No No No No Yes No No MGC46235 TUSC3 7991 No No 1 No No No No Yes No No MGC13453, MRT22, MRT7, MagT2, N33, OST3A, SLC58A2 TYRO3 7301 No No 1 No No No Yes No No No Brt, Dtk, Etk-2, RSE, Rek, Sky, Tif UBA1 7317 Yes No 1 Yes No No No No No No A1S9T, CFAP124, GXP1, POC20, UBE1, UBE1X UBE2A 7319 ENST00000371558 NM_003336 ENST00000371558 NM_003336 Yes No 1 Yes No No No No No No HHR6A, HR6A, RAD6A, UBC2 UBTF 7343 Yes No 1 Yes No No No No No No NOR-90, UBF, UBF1, UBF2 UCHL1 7345 ENST00000284440 NM_004181 ENST00000284440 NM_004181 Yes No 1 Yes No No No No No No PARK5, PGP9.5, Uch-L1 USP1 7398 ENST00000339950 NM_003368.4 ENST00000339950 NM_003368.5 Yes No 1 Yes No No No No No No WAS 7454 No No 1 No No No No No No Yes IMD2, THC, WASP, WASPA WDCP 80304 No No 1 No No No No No No Yes C2orf44, FLJ21945, MMAP WDR90 197335 No No 1 No No No No Yes No No C16orf15, C16orf16, C16orf17, C16orf18, C16orf19, FLJ36483, KIAA1924, POC16 WWP1 11059 ENST00000265428 NM_007013.3 ENST00000265428 NM_007013.3 Yes No 1 Yes No No No No No No AIP5, DKFZP434D2111 XRCC1 7515 ENST00000262887 NM_006297 ENST00000262887 NM_006297 No Yes 1 Yes No No No No No No RCC YPEL5 51646 No No 1 No No No No Yes No No CGI-127 YWHAE 7531 No No 1 No No No No No No Yes FLJ45465 YY1 7528 ENST00000262238 NM_003403.4 ENST00000262238 NM_003403.4 Yes No 1 Yes No No No No No No INO80S, UCRBP, YIN-YANG-1 YY1AP1 55249 No No 1 No No No No Yes No No HCCA2, YAP, YY1AP ZBTB20 26137 ENST00000474710 NM_001164342.2 ENST00000474710 NM_001164342.2 Yes Yes 1 Yes No No No No No No DKFZp566F123, DPZF, ODA-8S, ZNF288 ZFP36L1 677 ENST00000336440 NM_001244698.1 ENST00000336440 NM_001244698.1 No Yes 1 Yes No No No No No No Berg36, RNF162B, TIS11B, cMG1 ZFP36L2 678 ENST00000282388 NM_006887.4 ENST00000282388 NM_006887.4 No Yes 1 Yes No No No No No No ERF2, RNF162C, TIS11D ZNF24 7572 No No 1 No No No No Yes No No KOX17, ZNF191, ZSCAN3, Zfp191 ZNF331 55422 No No 1 No No No No No No Yes RITA, ZNF361, ZNF463 ZNF750 79755 ENST00000269394 NM_024702.2 ENST00000269394 NM_024702.2 No Yes 1 Yes No No No No No No FLJ13841, Zfp750