cancerGeneList.tsv

Hugo Symbol	Entrez Gene ID	GRCh37 Isoform	GRCh37 RefSeq	GRCh38 Isoform	GRCh38 RefSeq	Is Oncogene	Is Tumor Suppressor Gene	# of occurrence within resources (Column J-P)	OncoKB Annotated	MSK-IMPACT	MSK-HEME	FOUNDATION ONE	FOUNDATION ONE HEME	Vogelstein	COSMIC CGC (v99)	Gene Aliases
ABL1	25	ENST00000318560	NM_005157.4	ENST00000318560	NM_005157.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	ABL, JTK7, c-ABL
AKT1	207	ENST00000349310	NM_001014431.1	ENST00000349310	NM_001014431.1	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	AKT, PKB, PRKBA, RAC, RAC-alpha
ALK	238	ENST00000389048	NM_004304.4	ENST00000389048	NM_004304.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	CD246
AMER1	139285	ENST00000330258	NM_152424.3	ENST00000374869	NM_152424.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	FAM123B, FLJ39827, RP11-403E24.2, WTX
APC	324	ENST00000257430	NM_000038.5	ENST00000257430	NM_000038.5	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	DP2.5, PPP1R46
AR	367	ENST00000374690	NM_000044.3	ENST00000374690	NM_000044.3	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	AIS, DHTR, HUMARA, NR3C4, SBMA, SMAX1
ARID1A	8289	ENST00000324856	NM_006015.4	ENST00000324856	NM_006015.4	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	B120, BAF250, BAF250a, C10rf4, C1orf4, P270, SMARCF1
ASXL1	171023	ENST00000375687	NM_015338.5	ENST00000375687	NM_015338.5	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	KIAA0978
ATM	472	ENST00000278616	NM_000051.3	ENST00000278616	NM_000051.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	ATA, ATC, ATD, ATDC, TEL1, TELO1
ATRX	546	ENST00000373344	NM_000489.3	ENST00000373344	NM_000489.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	JMS, MRX52, RAD54, XH2, XNP
AXIN1	8312	ENST00000262320	NM_003502.3	ENST00000262320	NM_003502.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	PPP1R49
BAP1	8314	ENST00000460680	NM_004656.3	ENST00000460680	NM_004656.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	KIAA0272, UCHL2, hucep-6
BCL2	596	ENST00000333681	NM_000633.2	ENST00000333681	NM_000633.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	Bcl-2, PPP1R50
BCOR	54880	ENST00000378444	NM_001123385.1	ENST00000378444	NM_001123385.1	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	FLJ20285, KIAA1575
BRAF	673	ENST00000288602	NM_004333.4	ENST00000646891	NM_004333.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BRAF1
BRCA1	672	ENST00000357654	NM_007294.3	ENST00000357654	NM_007294.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	FANCS, PPP1R53, RNF53
BRCA2	675	ENST00000380152	NM_000059.3	ENST00000380152	NM_000059.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	FAD1, FANCD1, XRCC11
CARD11	84433	ENST00000396946	NM_032415.4	ENST00000396946	NM_032415.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BIMP3, CARMA1
CBL	867	ENST00000264033	NM_005188.3	ENST00000264033	NM_005188.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	CBL2, RNF55, c-Cbl
CDC73	79577	ENST00000367435	NM_024529.4	ENST00000367435	NM_024529.4	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	C1orf28, FIHP, HRPT1, HRPT2, parafibromin
CDH1	999	ENST00000261769	NM_004360.3	ENST00000261769	NM_004360.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	CD324, UVO, uvomorulin
CDKN2A	1029	ENST00000304494	NM_000077.4	ENST00000304494	NM_000077.4	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	ARF, CDKN2, CMM2, INK4, INK4a, MLM, p14, p14ARF, p16, p16INK4a, p19Arf
CEBPA	1050	ENST00000498907	NM_004364.3	ENST00000498907	NM_004364.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	C/EBP-alpha, CEBP
CIC	23152	ENST00000575354	NM_015125.3	ENST00000575354	NM_015125.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	KIAA0306
CREBBP	1387	ENST00000262367	NM_004380.2	ENST00000262367	NM_004380.2	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	KAT3A, RSTS, RTS
CTNNB1	1499	ENST00000349496	NM_001904.3	ENST00000349496	NM_001904.3	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	CTNNB, armadillo, beta-catenin
DAXX	1616	ENST00000374542	NM_001141970.1	ENST00000266000	NM_001141970.1	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	DAP6
DNMT3A	1788	ENST00000264709	NM_022552.4	ENST00000264709	NM_022552.4	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	
EGFR	1956	ENST00000275493	NM_005228.3	ENST00000275493	NM_005228.3	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	ERBB, ERBB1, ERRP
EP300	2033	ENST00000263253	NM_001429.3	ENST00000263253	NM_001429.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	KAT3B, p300
ERBB2	2064	ENST00000269571	NM_004448.2	ENST00000269571	NM_004448.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	CD340, HER-2, HER2, NGL
EZH2	2146	ENST00000320356	NM_004456.4	ENST00000320356	NM_004456.4	Yes	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	ENX-1, KMT6, KMT6A
FBXW7	55294	ENST00000281708	NM_033632.3	ENST00000281708	NM_033632.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	AGO, CDC4, FBW7, FBX30, FBXW6, FLJ11071, SEL-10, SEL10
FGFR2	2263	ENST00000358487	NM_000141.4	ENST00000358487	NM_000141.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BEK, CD332, CEK3, CFD1, ECT1, JWS, K-SAM, KGFR, TK14, TK25
FGFR3	2261	ENST00000260795	NM_000142.4	ENST00000440486	NM_000142.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	ACH, CD333, CEK2, JTK4
FLT3	2322	ENST00000241453	NM_004119.2	ENST00000241453	NM_004119.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	CD135, FLK2, STK1
FOXL2	668	ENST00000330315	NM_023067.3	ENST00000648323	NM_023067.3	Yes	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BPES, BPES1
GATA3	2625	ENST00000346208	NM_002051.2	ENST00000346208	NM_002051.2	Yes	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	HDR
GNA11	2767	ENST00000078429	NM_002067.2	ENST00000078429	NM_002067.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	FBH, FBH2, FHH2, HHC2
GNAQ	2776	ENST00000286548	NM_002072.3	ENST00000286548	NM_002072.3	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	G-ALPHA-q, GAQ
GNAS	2778	ENST00000371085	NM_000516.4	ENST00000371085	NM_000516.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	GNAS1, GNASXL, GPSA, NESP, NESP55, SCG6, SgVI
HNF1A	6927	ENST00000257555	NM_000545.5	ENST00000257555	NM_000545.5	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	HNF1, LFB1, MODY3, TCF1
HRAS	3265	ENST00000451590	NM_005343.2	ENST00000451590	NM_005343.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	HRAS1
IDH1	3417	ENST00000345146	NM_005896.2	ENST00000345146	NM_005896.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	
IDH2	3418	ENST00000330062	NM_002168.2	ENST00000330062	NM_002168.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	
JAK1	3716	ENST00000342505	NM_002227.2	ENST00000342505	NM_002227.2	Yes	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	JAK1A, JAK1B, JTK3
JAK2	3717	ENST00000381652	NM_004972.3	ENST00000381652	NM_004972.3	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	JTK10
JAK3	3718	ENST00000458235	NM_000215.3	ENST00000458235	NM_000215.3	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	JAK-3, JAK3_HUMAN, JAKL, L-JAK, LJAK
KDM5C	8242	ENST00000375401	NM_004187.3	ENST00000375401	NM_004187.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	DXS1272E, JARID1C, MRX13, SMCX, XE169
KDM6A	7403	ENST00000377967	NM_021140.2	ENST00000377967	NM_021140.2	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	UTX
KIT	3815	ENST00000288135	NM_000222.2	ENST00000288135	NM_000222.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	C-Kit, CD117, PBT, SCFR
KMT2D	8085	ENST00000301067	NM_003482.3	ENST00000301067	NM_003482.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	ALR, CAGL114, MLL2, TNRC21
KRAS	3845	ENST00000311936	NM_004985.3	ENST00000311936	NM_004985.3	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	K-Ras4B, KRAS1, KRAS2
MAP2K1	5604	ENST00000307102	NM_002755.3	ENST00000307102	NM_002755.3	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	MAPKK1, MEK1, PRKMK1
MAP3K1	4214	ENST00000399503	NM_005921.1	ENST00000399503	NM_005921.1	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	MAPKKK1, MEKK, MEKK1
MED12	9968	ENST00000374080	NM_005120.2	ENST00000374080	NM_005120.2	Yes	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	ARC240, CAGH45, FGS1, HOPA, KIAA0192, Kto, OKS, TNRC11, TRAP230
MEN1	4221	ENST00000312049	NM_130799.2	ENST00000312049	NM_130799.2	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	
MET	4233	ENST00000397752	NM_000245.2	ENST00000397752	NM_000245.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	DFNB97, HGFR, RCCP2
MLH1	4292	ENST00000231790	NM_000249.3	ENST00000231790	NM_000249.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	COCA2, FCC2, HNPCC, HNPCC2
MPL	4352	ENST00000372470	NM_005373.2	ENST00000372470	NM_005373.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	CD110, THPOR, TPOR
MSH2	4436	ENST00000233146	NM_000251.2	ENST00000233146	NM_000251.2	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	COCA1, HNPCC1
MSH6	2956	ENST00000234420	NM_000179.2	ENST00000234420	NM_000179.2	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	GTBP
MYD88	4615	ENST00000396334	NM_002468.4	ENST00000396334	NM_002468.5	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	
NF1	4763	ENST00000356175	NM_000267.3	ENST00000356175	NM_000267.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	
NF2	4771	ENST00000338641	NM_000268.3	ENST00000338641	NM_000268.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	ACN, BANF, SCH, merlin, merlin-1
NFE2L2	4780	ENST00000397062	NM_006164.4	ENST00000397062	NM_006164.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	
NOTCH1	4851	ENST00000277541	NM_017617.3	ENST00000651671	NM_017617.5	Yes	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	TAN1
NOTCH2	4853	ENST00000256646	NM_024408.3	ENST00000256646	NM_024408.3	Yes	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	
NPM1	4869	ENST00000296930	NM_002520.6	ENST00000296930	NM_002520.6	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	B23, NPM
NRAS	4893	ENST00000369535	NM_002524.4	ENST00000369535	NM_002524.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	N-ras
PAX5	5079	ENST00000358127	NM_016734.2	ENST00000358127	NM_016734.2	Yes	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BSAP
PBRM1	55193	ENST00000394830	NM_018313.4	ENST00000394830	NM_018313.4	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BAF180, PB1
PDGFRA	5156	ENST00000257290	NM_006206.4	ENST00000257290	NM_006206.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	CD140a, GAS9, PDGFR2
PIK3CA	5290	ENST00000263967	NM_006218.2	ENST00000263967	NM_006218.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	PI3K
PIK3R1	5295	ENST00000274335	NM_181523.2	ENST00000521381	NM_181523.2	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	GRB1, p85-ALPHA
PPP2R1A	5518	ENST00000322088	NM_014225.5	ENST00000322088	NM_014225.5	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	PP2A-Aalpha, PP2AA, PR65A
PRDM1	639	ENST00000369096	NM_001198.3	ENST00000369096	NM_001198.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BLIMP1, PRDI-BF1
PTCH1	5727	ENST00000331920	NM_000264.3	ENST00000331920	NM_000264.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BCNS, NBCCS, PTCH
PTEN	5728	ENST00000371953	NM_000314.4	ENST00000371953	NM_000314.4	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BZS, MHAM, MMAC1, PTEN1
PTPN11	5781	ENST00000351677	NM_002834.3	ENST00000351677	NM_002834.3	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BPTP3, NS1, PTP2C, SH-PTP2, SHP-2, SHP2
RB1	5925	ENST00000267163	NM_000321.2	ENST00000267163	NM_000321.2	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	OSRC, PPP1R130, RB
RET	5979	ENST00000355710	NM_020975.4	ENST00000355710	NM_020975.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	CDHF12, CDHR16, HSCR1, MEN2A, MEN2B, MTC1, RET51
RNF43	54894	ENST00000407977	NM_017763.4	ENST00000407977	NM_017763.4	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	DKFZp781H0392, FLJ20315, URCC
SETD2	29072	ENST00000409792	NM_014159.6	ENST00000409792	NM_014159.6	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	FLJ23184, HIF-1, HYPB, KIAA1732, KMT3A
SF3B1	23451	ENST00000335508	NM_012433.2	ENST00000335508	NM_012433.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	Hsh155, PRPF10, Prp10, SAP155, SF3b155
SMAD2	4087	ENST00000262160	NM_001003652.3	ENST00000262160	NM_001003652.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	JV18-1, MADH2, MADR2
SMAD4	4089	ENST00000342988	NM_005359.5	ENST00000342988	NM_005359.5	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	DPC4, MADH4
SMARCA4	6597	ENST00000358026	NM_001128849.1	ENST00000646693	NM_001128849.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BRG1, FLJ39786, SNF2-BETA, SNF2L4, hSNF2b
SMARCB1	6598	ENST00000263121	NM_003073.3	ENST00000618915	NM_003073.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BAF47, Ini1, PPP1R144, RDT, SNF5, SNF5L1, Sfh1p, Snr1, hSNFS
SMO	6608	ENST00000249373	NM_005631.4	ENST00000249373	NM_005631.4	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	FZD11, SMOH
SOCS1	8651	ENST00000332029	NM_003745.1	ENST00000332029	NM_003745.1	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	Cish1, JAB, SOCS-1, SSI-1, TIP3
SPOP	8405	ENST00000347630	NM_001007228.1	ENST00000347630	NM_001007228.1	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	BTBD32, TEF2
STAG2	10735	ENST00000218089	NM_001042749.1	ENST00000218089	NM_001042749.1	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	SA-2, SA2, SCC3B
STK11	6794	ENST00000326873	NM_000455.4	ENST00000326873	NM_000455.4	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	LKB1, PJS
TET2	54790	ENST00000380013	NM_001127208.2	ENST00000380013	NM_001127208.2	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	FLJ20032, KIAA1546
TNFAIP3	7128	ENST00000237289	NM_006290.3	ENST00000237289	NM_006290.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	A20, OTUD7C
TP53	7157	ENST00000269305	NM_000546.5	ENST00000269305	NM_000546.5	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	LFS1, p53
TSC1	7248	ENST00000298552	NM_000368.4	ENST00000298552	NM_000368.4	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	KIAA0243, TSC, hamartin
U2AF1	7307	ENST00000291552	NM_006758.2	ENST00000291552	NM_006758.2	Yes	No	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	RNU2AF1, U2AF35, U2AFBP
VHL	7428	ENST00000256474	NM_000551.3	ENST00000256474	NM_000551.3	No	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	VHL1
WT1	7490	ENST00000332351	NM_024426.4	ENST00000452863	NM_024426.4	Yes	Yes	7	Yes	Yes	Yes	Yes	Yes	Yes	Yes	AWT1, GUD, NPHS4, WAGR, WIT-2
AKT2	208	ENST00000392038	NM_001626.4	ENST00000392038	NM_001626.4	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	PKBβ
ARID2	196528	ENST00000334344	NM_152641.2	ENST00000334344	NM_152641.2	No	Yes	6	Yes	Yes	Yes	No	Yes	Yes	Yes	BAF200, DKFZp686G052, FLJ30619, KIAA1557
ATR	545	ENST00000350721	NM_001184.3	ENST00000350721	NM_001184.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	FRP1, MEC1, SCKL, SCKL1
B2M	567	ENST00000558401	NM_004048.2	ENST00000559916	NM_004048.2	No	Yes	6	Yes	Yes	Yes	No	Yes	Yes	Yes	
BARD1	580	ENST00000260947	NM_000465.2	ENST00000260947	NM_000465.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	
BCL6	604	ENST00000232014	NM_001706.4	ENST00000232014	NM_001706.4	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	BCL5, BCL6A, LAZ3, ZBTB27, ZNF51
BRD4	23476	ENST00000263377	NM_058243.2	ENST00000263377	NM_058243.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	HUNK1, HUNKI, MCAP
BRIP1	83990	ENST00000259008	NM_032043.2	ENST00000259008	NM_032043.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	FANCJ
BTK	695	ENST00000308731	NM_000061.2	ENST00000308731	NM_000061.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	AGMX1, ATK, IMD1, PSCTK1, XLA
CALR	811	ENST00000316448	NM_004343.3	ENST00000316448	NM_004343.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CRT, FLJ26680, RO, SSA, cC1qR
CASP8	841	ENST00000358485	NM_001080125.1	ENST00000358485	NM_001080125.1	No	Yes	6	Yes	Yes	Yes	Yes	No	Yes	Yes	Casp-8, FLICE, MACH, MCH5
CBFB	865	ENST00000412916	NM_022845.2	ENST00000412916	NM_022845.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	PEBP2B
CCND1	595	ENST00000227507	NM_053056.2	ENST00000227507	NM_053056.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	BCL1, D11S287E, PRAD1, U21B31
CCND2	894	ENST00000261254	NM_001759.3	ENST00000261254	NM_001759.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	
CCND3	896	ENST00000372991	NM_001760.3	ENST00000372991	NM_001760.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	
CCNE1	898	ENST00000262643	NM_001238.2	ENST00000262643	NM_001238.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CCNE
CD274	29126	ENST00000381577	NM_014143.3	ENST00000381577	NM_014143.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	B7-H, B7-H1, B7H1, PD-L1, PDCD1LG1, PDL1
CD79A	973	ENST00000221972	NM_001783.3	ENST00000221972	NM_001783.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	IGA, MB-1
CD79B	974	ENST00000392795	NM_001039933.1	ENST00000392795	NM_001039933.1	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	B29, IGB
CDK12	51755	ENST00000447079	NM_016507.2	ENST00000447079	NM_016507.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CRK7, CRKR, CRKRS, KIAA0904
CDK4	1019	ENST00000257904	NM_000075.3	ENST00000257904	NM_000075.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	PSK-J3
CDK6	1021	ENST00000265734	NM_001145306.1	ENST00000265734	NM_001145306.1	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	PLSTIRE
CDKN1B	1027	ENST00000228872	NM_004064.3	ENST00000228872	NM_004064.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	KIP1, P27KIP1
CDKN2C	1031	ENST00000262662	NM_078626.2	ENST00000262662	NM_078626.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	INK4C
CHEK2	11200	ENST00000328354	NM_007194.3	ENST00000404276	NM_007194.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CHK2, HuCds1, PP1425, RAD53, bA444G7
CRLF2	64109	ENST00000381566	NM_022148.2	ENST00000381566	NM_022148.4	Yes	No	6	Yes	Yes	Yes	No	Yes	Yes	Yes	CRL2, TSLPR
CSF1R	1436	ENST00000286301	NM_005211.3	ENST00000286301	NM_005211.3	No	No	6	Yes	Yes	Yes	Yes	Yes	Yes	No	C-FMS, CD115, CSFR, FMS
CSF3R	1441	ENST00000361632	NM_000760.3	ENST00000361632	NM_000760.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CD114, GCSFR
CTCF	10664	ENST00000264010	NM_006565.3	ENST00000264010	NM_006565.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CFAP108, FAP108
CXCR4	7852	ENST00000241393	NM_003467.2	ENST00000241393	NM_003467.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CD184, D2S201E, HM89, HSY3RR, LESTR, NPY3R, NPYY3R, fusin
DDR2	4921	ENST00000367921	NM_006182.2	ENST00000367921	NM_006182.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	NTRKR3, TYRO10
ERBB3	2065	ENST00000267101	NM_001982.3	ENST00000267101	NM_001982.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	HER3, LCCS2
ERBB4	2066	ENST00000342788	NM_005235.2	ENST00000342788	NM_005235.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	ALS19, HER4
ERG	2078	ENST00000288319	NM_182918.3	ENST00000288319	NM_182918.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	erg-3
ESR1	2099	ENST00000206249	NM_001122740.1	ENST00000206249	NM_001122740.1	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	ER-alpha, ESR, Era, NR3A1
ETV6	2120	ENST00000396373	NM_001987.4	ENST00000396373	NM_001987.4	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	TEL
FANCA	2175	ENST00000389301	NM_000135.2	ENST00000389301	NM_000135.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	FA-H, FAA, FACA, FANCH
FANCC	2176	ENST00000289081	NM_000136.2	ENST00000289081	NM_000136.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	FA3, FAC, FACC
FGFR1	2260	ENST00000425967	NM_001174067.1	ENST00000425967	NM_001174067.1	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	BFGFR, CD331, CEK, FLT2, H5, KAL2, N-SAM
FGFR4	2264	ENST00000292408	NM_213647.1	ENST00000292408	NM_213647.1	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CD334, JTK2
FLCN	201163	ENST00000285071	NM_144997.5	ENST00000285071	NM_144997.5	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	BHD, DENND8B, MGC17998, MGC23445
FUBP1	8880	ENST00000370768	NM_003902.3	ENST00000370768	NM_003902.3	No	Yes	6	Yes	Yes	Yes	Yes	No	Yes	Yes	FUBP
GATA1	2623	ENST00000376670	NM_002049.3	ENST00000376670	NM_002049.3	No	No	6	Yes	Yes	Yes	No	Yes	Yes	Yes	ERYF1, GATA-1, GF1, NF-E1, NFE1
GATA2	2624	ENST00000341105	NM_032638.4	ENST00000341105	NM_032638.4	Yes	Yes	6	Yes	Yes	Yes	No	Yes	Yes	Yes	NFE1B
H3-3A	3020	ENST00000366813	NM_002107.4	ENST00000366815	NM_002107.4	Yes	No	6	Yes	Yes	Yes	Yes	No	Yes	Yes	H3.3A, H3F3, H3F3A
H3C2	8358	ENST00000244661	NM_003537.3	ENST00000621411	NM_003537.3	No	No	6	Yes	Yes	Yes	No	Yes	Yes	Yes	H3/l, H3FL, HIST1H3B
HGF	3082	ENST00000222390	NM_000601.4	ENST00000222390	NM_000601.4	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	DFNB39, F-TCF, HGFB, HPTA
IKZF1	10320	ENST00000331340	NM_006060.4	ENST00000331340	NM_006060.6	No	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	Hs.54452, IKAROS, LyF-1, PPP1R92, ZNFN1A1, hIk-1
IRF4	3662	ENST00000380956	NM_002460.3	ENST00000380956	NM_002460.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	LSIRF, MUM1
JUN	3725	ENST00000371222	NM_002228.3	ENST00000371222	NM_002228.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	AP-1, c-Jun
KDM5A	5927	ENST00000399788	NM_001042603.1	ENST00000399788	NM_001042603.1	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	JARID1A, RBBP2
KDR	3791	ENST00000263923	NM_002253.2	ENST00000263923	NM_002253.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CD309, FLK1, VEGFR, VEGFR2
KEAP1	9817	ENST00000171111	NM_203500.1	ENST00000171111	NM_203500.1	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	INrf2, KIAA0132, KLHL19, MGC10630, MGC1114, MGC20887, MGC4407, MGC9454
KMT2A	4297	ENST00000534358	NM_001197104.1	ENST00000534358	NM_001197104.1	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	ALL-1, CXXC7, HRX, HTRX1, MLL, MLL1A, TRX1
KMT2C	58508	ENST00000262189	NM_170606.2	ENST00000262189	NM_170606.2	No	Yes	6	Yes	Yes	Yes	No	Yes	Yes	Yes	HALR, KIAA1506, MLL3
MAP2K2	5605	ENST00000262948	NM_030662.3	ENST00000262948	NM_030662.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	MEK2, PRKMK2
MAP2K4	6416	ENST00000353533	NM_003010.3	ENST00000353533	NM_003010.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	JNKK1, MEK4, MKK4, PRKMK4, SERK1
MAPK1	5594	ENST00000215832	NM_002745.4	ENST00000215832	NM_002745.4	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	ERK2, MAPK2, PRKM1, PRKM2, p41mapk
MDM2	4193	ENST00000462284	NM_002392.5	ENST00000258149	NM_002392.5	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	HDM2, MGC5370
MDM4	4194	ENST00000367182	NM_002393.4	ENST00000367182	NM_002393.4	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	HDMX, MDMX
MITF	4286	ENST00000394351	NM_000248.3	ENST00000394351	NM_000248.4	Yes	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	MI, WS2, WS2A, bHLHe32
MTOR	2475	ENST00000361445	NM_004958.3	ENST00000361445	NM_004958.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	FLJ44809, FRAP, FRAP1, FRAP2, RAFT1, RAPT1
MUTYH	4595	ENST00000372115	NM_001048171.1	ENST00000372115	NM_001048171.1	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	MYH
MYC	4609	ENST00000377970	NM_002467.4	ENST00000621592	NM_002467.4	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	MYCC, bHLHe39, c-Myc
MYCL	4610	ENST00000397332	NM_001033082.2	ENST00000397332	NM_001033082.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	LMYC, MYCL1, bHLHe38
MYCN	4613	ENST00000281043	NM_005378.4	ENST00000281043	NM_005378.4	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	MYCNOT, N-myc, NMYC, bHLHe37
NKX2-1	7080	ENST00000354822	NM_001079668.2	ENST00000354822	NM_001079668.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	BCH, NKX2A, TITF1, TTF-1
NSD2	7468	ENST00000382891	NM_001042424.2	ENST00000382891	NM_001042424.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	KMT3G, MMSET, WHSC1
NSD3	54904	ENST00000317025	NM_023034.1	ENST00000317025	NM_023034.1	No	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	FLJ20353, KMT3F, WHISTLE, WHSC1L1
NTRK1	4914	ENST00000524377	NM_002529.3	ENST00000524377	NM_002529.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	MTC, TRKA
NTRK2	4915	ENST00000277120	NM_006180.3	ENST00000277120	NM_006180.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	TRKB
NTRK3	4916	ENST00000360948	NM_001012338.2	ENST00000360948	NM_001012338.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	TRKC
PALB2	79728	ENST00000261584	NM_024675.3	ENST00000261584	NM_024675.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	FANCN, FLJ21816
PDCD1LG2	80380	ENST00000397747	NM_025239.3	ENST00000397747	NM_025239.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	B7-DC, Btdc, CD273, PD-L2, PDL2, bA574F11.2
PDGFRB	5159	ENST00000261799	NM_002609.3	ENST00000261799	NM_002609.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CD140b, JTK12, PDGFR, PDGFR1
PHF6	84295	ENST00000332070	NM_001015877.1	ENST00000332070	NM_001015877.1	No	Yes	6	Yes	Yes	Yes	No	Yes	Yes	Yes	BFLS, BORJ, CENP-31, KIAA1823, MGC14797
PIM1	5292	ENST00000373509	NM_002648.3	ENST00000373509	NM_002648.3	No	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	PIM
PRKAR1A	5573	ENST00000358598	NM_212471.2	ENST00000358598	NM_212471.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CNC1, PRKAR1, TSE1
RAD21	5885	ENST00000297338	NM_006265.2	ENST00000297338	NM_006265.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	KIAA0078, SCC1, hHR21
RAF1	5894	ENST00000251849	NM_002880.3	ENST00000251849	NM_002880.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CRAF, Raf-1, c-Raf
RARA	5914	ENST00000254066	NM_000964.3	ENST00000254066	NM_000964.3	No	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	NR1B1
ROS1	6098	ENST00000368508	NM_002944.2	ENST00000368508	NM_002944.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	MCF3, ROS, c-ros-1
RUNX1	861	ENST00000300305	NM_001754.4	ENST00000300305	NM_001754.4	No	Yes	6	Yes	Yes	Yes	No	Yes	Yes	Yes	AML1, AMLCR1, CBFA2, PEBP2A2
SDHA	6389	ENST00000264932	NM_004168.2	ENST00000264932	NM_004168.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	FP, SDH2, SDHF
SDHB	6390	ENST00000375499	NM_003000.2	ENST00000375499	NM_003000.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	SDH, SDH1
SDHC	6391	ENST00000367975	NM_003001.3	ENST00000367975	NM_003001.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CYB560, PGL3, cybL
SDHD	6392	ENST00000375549	NM_003002.3	ENST00000375549	NM_003002.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	PGL, PGL1, cybS
SOX2	6657	ENST00000325404	NM_003106.3	ENST00000325404	NM_003106.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	
SPEN	23013	ENST00000375759	NM_015001.2	ENST00000375759	NM_015001.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	KIAA0929, MINT, RBM15C, SHARP
SRC	6714	ENST00000358208	NM_198291.2	ENST00000358208	NM_198291.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	ASV, SRC1, c-src
SRSF2	6427	ENST00000359995	NM_003016.4	ENST00000359995	NM_003016.4	No	No	6	Yes	Yes	Yes	No	Yes	Yes	Yes	PR264, SC-35, SC35, SFRS2, SFRS2A
STAT3	6774	ENST00000264657	NM_139276.2	ENST00000264657	NM_139276.2	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	APRF
SUFU	51684	ENST00000369902	NM_016169.3	ENST00000369902	NM_016169.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	PRO1280, SUFUH, SUFUXL
SYK	6850	ENST00000375746	NM_003177.5	ENST00000375746	NM_003177.5	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	
TENT5C	54855	ENST00000369448	NM_017709.3	ENST00000369448	NM_017709.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	FAM46C, FLJ20202
TGFBR2	7048	ENST00000295754	NM_003242.5	ENST00000295754	NM_003242.6	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	MFS2, TBR-ii, TBRII
TMPRSS2	7113	ENST00000398585	NM_001135099.1	ENST00000398585	NM_001135099.1	No	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	PRSS10
TNFRSF14	8764	ENST00000355716	NM_003820.2	ENST00000355716	NM_003820.2	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	ATAR, CD270, HVEA, HVEM, LIGHTR
TSC2	7249	ENST00000219476	NM_000548.3	ENST00000219476	NM_000548.3	No	Yes	6	Yes	Yes	Yes	Yes	Yes	No	Yes	LAM, PPP1R160, TSC4, tuberin
XPO1	7514	ENST00000401558	NM_003400.3	ENST00000401558	NM_003400.3	Yes	No	6	Yes	Yes	Yes	Yes	Yes	No	Yes	CRM-1, CRM1, emb
AKT3	10000	ENST00000263826	NM_005465.4	ENST00000263826	NM_005465.4	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	PKBG, PRKBG, RAC-gamma
ARAF	369	ENST00000377045	NM_001654.4	ENST00000377045	NM_001654.4	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	ARAF1
ARID1B	57492	ENST00000346085	NM_020732.3	ENST00000647938	NM_020732.3	No	Yes	5	Yes	Yes	Yes	No	No	Yes	Yes	6A3-5, BAF250b, DAN15, ELD/OSA1, KIAA1235, p250R
AURKA	6790	ENST00000312783	NM_003600.2	ENST00000312783	NM_003600.2	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	AIK, ARK1, AurA, BTAK, PPP1R47, STK15, STK6
AURKB	9212	ENST00000585124	NM_004217.3	ENST00000585124	NM_004217.3	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	ARK2, Aik2, AurB, IPL1, PPP1R48, STK12, STK5
AXL	558	ENST00000301178	NM_021913.4	ENST00000301178	NM_021913.4	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	JTK11, Tyro7, UFO
BCL10	8915	ENST00000370580	NM_003921.4	ENST00000648566	NM_003921.4	No	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	CIPER, CLAP, c-E10, mE10
BCORL1	63035	ENST00000218147		ENST00000218147	NM_021946.4	No	Yes	5	Yes	No	Yes	Yes	Yes	No	Yes	CXorf10, FLJ11362
BCR	613	ENST00000305877	NM_004327.3	ENST00000305877	NM_004327.3	Yes	No	5	Yes	No	Yes	Yes	Yes	No	Yes	ALL, BCR1, CML, D22S11, D22S662, PHL
BIRC3	330	ENST00000263464	NM_182962.2	ENST00000263464	NM_182962.2	Yes	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	API2, MALT2, MIHC, RNF49, c-IAP2, cIAP2, hiap-1
BLM	641	ENST00000355112	NM_000057.2	ENST00000355112	NM_000057.2	No	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	BS, RECQ2, RECQL3
BTG1	694	ENST00000256015	NM_001731.2	ENST00000256015	NM_001731.2	No	Yes	5	Yes	No	Yes	Yes	Yes	No	Yes	APRO2
CDK8	1024	ENST00000381527	NM_001260.1	ENST00000381527	NM_001260.1	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	K35
CDKN2B	1030	ENST00000276925	NM_004936.3	ENST00000276925	NM_004936.3	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	CDK4I, INK4B, MTS2, P15, TP15, p15INK4b
CHEK1	1111	ENST00000428830	NM_001274.5	ENST00000428830	NM_001274.5	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	CHK1
CRKL	1399	ENST00000354336	NM_005207.3	ENST00000354336	NM_005207.3	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	
CYLD	1540	ENST00000398568	NM_001042355.1	ENST00000398568	NM_001042355.1	No	Yes	5	Yes	Yes	Yes	No	No	Yes	Yes	CYLD1, KIAA0849, USPL2
DOT1L	84444	ENST00000398665	NM_032482.2	ENST00000398665	NM_032482.2	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	DOT1, KIAA1814, KMT4
EED	8726	ENST00000263360	NM_003797.3	ENST00000263360	NM_003797.3	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	HEED, WAIT-1
EIF4A2	1974	ENST00000323963	NM_001967.3	ENST00000323963	NM_001967.3	Yes	No	5	Yes	Yes	Yes	No	Yes	No	Yes	BM-010, DDX2B
EPHA3	2042	ENST00000336596	NM_005233.5	ENST00000336596	NM_005233.5	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	ETK, ETK1, HEK, HEK4, TYRO4
EPHB1	2047	ENST00000398015	NM_004441.4	ENST00000398015	NM_004441.4	Yes	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	EPHT2, Hek6
ERCC4	2072	ENST00000311895	NM_005236.2	ENST00000311895	NM_005236.2	No	Yes	5	Yes	Yes	Yes	Yes	No	No	Yes	FANCQ, XPF
ETV1	2115	ENST00000405192	NM_001163147.1	ENST00000405192	NM_001163147.1	Yes	No	5	Yes	Yes	Yes	No	Yes	No	Yes	ER81
FAS	355	ENST00000355740	NM_000043.4	ENST00000652046	NM_000043.6	No	Yes	5	Yes	No	Yes	Yes	Yes	No	Yes	APO-1, APT1, CD95, FAS1, TNFRSF6
FGF19	9965	ENST00000294312	NM_005117.2	ENST00000294312	NM_005117.2	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	
FGF3	2248	ENST00000334134	NM_005247.2	ENST00000334134	NM_005247.2	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	HBGF-3, INT2
FGF4	2249	ENST00000168712	NM_002007.2	ENST00000168712	NM_002007.2	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	HBGF-4, HST, HST-1, HSTF1, K-FGF, KFGF
FH	2271	ENST00000366560	NM_000143.3	ENST00000366560	NM_000143.3	No	Yes	5	Yes	Yes	Yes	Yes	No	No	Yes	
FLT1	2321	ENST00000282397	NM_002019.4	ENST00000282397	NM_002019.4	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	FLT, VEGFR1
FLT4	2324	ENST00000261937	NM_182925.4	ENST00000261937	NM_182925.4	Yes	No	5	Yes	Yes	Yes	No	Yes	No	Yes	VEGFR-3, VEGFR3
FOXO1	2308	ENST00000379561	NM_002015.3	ENST00000379561	NM_002015.3	No	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	FKH1, FKHR, FOXO1A
FOXP1	27086	ENST00000318789	NM_001244814.1	ENST00000318789	NM_001244814.1	Yes	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	12CC4, HSPC215, QRF1, hFKH1B
GRIN2A	2903	ENST00000330684	NM_001134407.1	ENST00000330684	NM_001134407.1	No	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	GluN2A, NMDAR2A
GSK3B	2932	ENST00000316626	NM_002093.3	ENST00000316626	NM_002093.3	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	
ID3	3399	ENST00000374561	NM_002167.4	ENST00000374561	NM_002167.4	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	HEIR-1, bHLHb25
IGF1R	3480	ENST00000268035	NM_000875.3	ENST00000650285	NM_000875.3	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	CD221, IGFIR, IGFR, JTK13, MGC18216
IKBKE	9641	ENST00000367120	NM_014002.3	ENST00000581977	NM_014002.3	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	IKK-i, IKKE, KIAA0151
IL7R	3575	ENST00000303115	NM_002185.3	ENST00000303115	NM_002185.3	Yes	No	5	Yes	Yes	Yes	No	Yes	No	Yes	CD127, IL7RA
INPP4B	8821	ENST00000262992	NM_001101669.1	ENST00000262992	NM_001101669.1	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	
IRS2	8660	ENST00000375856	NM_003749.2	ENST00000375856	NM_003749.2	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	
KLF4	9314	ENST00000374672	NM_004235.4	ENST00000374672	NM_004235.4	Yes	Yes	5	Yes	Yes	Yes	No	No	Yes	Yes	EZF, GKLF
LMO1	4004	ENST00000335790	NM_002315.2	ENST00000335790	NM_002315.2	Yes	No	5	Yes	Yes	Yes	No	Yes	No	Yes	RBTN1, RHOM1
MALT1	10892	ENST00000348428	NM_006785.3	ENST00000649217	NM_006785.3	No	No	5	Yes	Yes	Yes	No	Yes	No	Yes	MLT, PCASP1
MAP3K13	9175	ENST00000265026	NM_004721.4	ENST00000265026	NM_004721.4	Yes	No	5	Yes	Yes	Yes	Yes	No	No	Yes	LZK, MEKK13
MCL1	4170	ENST00000369026	NM_021960.4	ENST00000369026	NM_021960.4	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	BCL2L3, Mcl-1
MEF2B	100271849	ENST00000162023	NM_001145785.1	ENST00000424583	NM_001145785.1	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	RSRFR2
MRE11	4361	ENST00000323929	NM_005591.3	ENST00000323929	NM_005591.3	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	ATLD, MRE11A
MSH3	4437	ENST00000265081	NM_002439.4	ENST00000265081	NM_002439.4	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	
MSI2	124540	ENST00000284073	NM_138962.2	ENST00000284073	NM_138962.2	Yes	No	5	Yes	Yes	Yes	No	Yes	No	Yes	
NBN	4683	ENST00000265433	NM_002485.4	ENST00000265433	NM_002485.4	No	Yes	5	Yes	Yes	Yes	Yes	No	No	Yes	AT-V1, AT-V2, ATV, NBS, NBS1
NCOR1	9611	ENST00000268712	NM_006311.3	ENST00000268712	NM_006311.3	No	Yes	5	Yes	Yes	Yes	No	No	Yes	Yes	KIAA1047, MGC104216, N-CoR, PPP1R109, TRAC1, hCIT529I10, hN-CoR
NFKBIA	4792	ENST00000216797	NM_020529.2	ENST00000216797	NM_020529.2	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	IKBA, IkappaBalpha, MAD-3, NFKBI
NSD1	64324	ENST00000439151	NM_022455.4	ENST00000439151	NM_022455.4	Yes	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	ARA267, FLJ22263, KMT3B, STO
NT5C2	22978	ENST00000343289	NM_001134373.2	ENST00000343289	NM_001134373.2	Yes	No	5	Yes	No	Yes	Yes	Yes	No	Yes	GMP, NT5B, PNT5, SPG45, SPG65, cN-II
P2RY8	286530	ENST00000381297	NM_178129.4	ENST00000381297	NM_178129.4	No	Yes	5	Yes	No	Yes	Yes	Yes	No	Yes	P2Y8
PDCD1	5133	ENST00000334409	NM_005018.2	ENST00000334409	NM_005018.2	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	CD279, PD-1, SLEB2, hSLE1
PIK3CB	5291	ENST00000289153	NM_006219.2	ENST00000289153	NM_006219.2	Yes	No	5	Yes	Yes	Yes	Yes	No	No	Yes	PIK3C1
PMS2	5395	ENST00000265849	NM_000535.5	ENST00000265849	NM_000535.5	No	Yes	5	Yes	Yes	Yes	Yes	No	No	Yes	HNPCC4, H_DJ0042M02.9, MLH4, PMSL2
POLD1	5424	ENST00000440232	NM_002691.3	ENST00000440232	NM_002691.3	No	Yes	5	Yes	Yes	Yes	Yes	No	No	Yes	POLD
POLE	5426	ENST00000320574	NM_006231.2	ENST00000320574	NM_006231.2	No	Yes	5	Yes	Yes	Yes	Yes	No	No	Yes	POLE1
POT1	25913	ENST00000357628	NM_015450.2	ENST00000357628	NM_015450.2	No	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	DKFZp586D211, hPot1
PPARG	5468	ENST00000287820	NM_015869.4	ENST00000287820	NM_015869.4	Yes	No	5	Yes	Yes	Yes	Yes	No	No	Yes	NR1C3, PPARG1, PPARG2, PPARgamma
RAC1	5879	ENST00000356142	NM_018890.3	ENST00000356142	NM_018890.3	Yes	No	5	Yes	Yes	Yes	Yes	No	No	Yes	Rac-1, TC-25, p21-Rac1
RAD50	10111	ENST00000265335	NM_005732.3	ENST00000378823	NM_005732.3	No	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	RAD50-2, hRad50
RAD51	5888	ENST00000267868	NM_002875.4	ENST00000267868	NM_002875.4	No	Yes	5	Yes	Yes	Yes	Yes	Yes	No	No	BRCC5, FANCR, HsRad51, HsT16930, RAD51A, RECA
RAD51B	5890	ENST00000487270	NM_133509.3	ENST00000487270	NM_133509.3	No	Yes	5	Yes	Yes	Yes	Yes	No	No	Yes	R51H2, RAD51L1, REC2, hREC2
RBM10	8241	ENST00000329236	NM_001204468.1	ENST00000628161	NM_001204468.1	No	Yes	5	Yes	Yes	Yes	Yes	No	No	Yes	DXS8237E, GPATC9, GPATCH9, KIAA0122, S1-1, ZRANB5
REL	5966	ENST00000295025	NM_002908.2	ENST00000295025	NM_002908.2	Yes	No	5	Yes	Yes	Yes	Yes	No	No	Yes	HIVEN86A, I-Rel, c-Rel
RHOA	387	ENST00000418115	NM_001664.2	ENST00000418115	NM_001664.2	Yes	No	5	Yes	Yes	Yes	No	Yes	No	Yes	ARH12, ARHA, RHOH12, Rho12
RICTOR	253260	ENST00000357387	NM_152756.3	ENST00000357387	NM_152756.3	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	AVO3, KIAA1999, MGC39830, PIA
RPTOR	57521	ENST00000306801	NM_020761.2	ENST00000306801	NM_020761.2	Yes	No	5	Yes	Yes	Yes	Yes	Yes	No	No	KIAA1303, KOG1, Mip1, raptor
SETBP1	26040	ENST00000282030	NM_015559.2	ENST00000649279	NM_015559.2	Yes	No	5	Yes	No	Yes	No	Yes	Yes	Yes	KIAA0437, SEB
SOX9	6662	ENST00000245479	NM_000346.3	ENST00000245479	NM_000346.3	Yes	Yes	5	Yes	Yes	Yes	Yes	No	Yes	No	CMD1, CMPD1
STAT5B	6777	ENST00000293328	NM_012448.3	ENST00000293328	NM_012448.3	Yes	No	5	Yes	Yes	Yes	No	Yes	No	Yes	
SUZ12	23512	ENST00000322652	NM_015355.2	ENST00000322652	NM_015355.2	No	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	CHET9, JJAZ1, KIAA0160
TBX3	6926	ENST00000257566	NM_016569.3	ENST00000257566	NM_016569.3	No	Yes	5	Yes	Yes	Yes	Yes	No	No	Yes	TBX3-ISO, UMS, XHL
TCF3	6929	ENST00000344749	NM_001136139.2	ENST00000588136	NM_001136139.2	No	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	E2A, E47, ITF1, MGC129647, MGC129648, VDIR, bHLHb21
TERT	7015	ENST00000310581	NM_198253.2	ENST00000310581	NM_198253.2	Yes	No	5	Yes	Yes	Yes	Yes	No	No	Yes	EST2, TCS1, TP2, TRT, hEST2
TET1	80312	ENST00000373644	NM_030625.2	ENST00000373644	NM_030625.2	No	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	CXXC6, KIAA1676, LCX, bA119F7.1
TOP1	7150	ENST00000361337	NM_003286.2	ENST00000361337	NM_003286.2	Yes	No	5	Yes	Yes	Yes	No	Yes	No	Yes	
TP63	8626	ENST00000264731	NM_003722.4	ENST00000264731	NM_003722.4	Yes	Yes	5	Yes	Yes	Yes	No	Yes	No	Yes	EEC3, KET, OFC8, SHFM4, TP53CP, TP53L, TP73L, p53CP, p63, p73H, p73L
TRAF7	84231	ENST00000326181	NM_032271.2	ENST00000326181	NM_032271.2	No	No	5	Yes	Yes	Yes	No	No	Yes	Yes	DKFZp586I021, MGC7807, RFWD1, RNF119
TSHR	7253	ENST00000298171	NM_000369.2	ENST00000541158	NM_000369.2	Yes	No	5	Yes	Yes	Yes	No	Yes	Yes	No	LGR3
ZRSR2	8233	ENST00000307771	NM_005089.3	ENST00000307771	NM_005089.3	No	No	5	Yes	Yes	Yes	No	Yes	No	Yes	U2AF1-RS2, U2AF1L2, URP, ZC3H22
ACVR1	90	ENST00000263640	NM_001111067.2	ENST00000263640	NM_001111067.2	Yes	No	4	Yes	Yes	Yes	No	No	No	Yes	ACVR1A, ACVRLK2, ALK2, SKR1
ACVR1B	91	ENST00000257963	NM_004302	ENST00000257963	NM_004302	No	Yes	4	Yes	No	No	Yes	No	Yes	Yes	ACVRLK4, ALK4, ActRIB, SKR2
ALOX12B	242	ENST00000319144	NM_001139.2	ENST00000647874	NM_001139.2	Yes	Yes	4	Yes	Yes	Yes	Yes	No	No	No	12R-LOX
AXIN2	8313	ENST00000307078	NM_004655.3	ENST00000307078	NM_004655.3	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	DKFZp781B0869, MGC126582
BCL11B	64919	ENST00000357195	NM_138576.3	ENST00000357195	NM_138576.3	No	Yes	4	Yes	No	Yes	No	Yes	No	Yes	CTIP-2, CTIP2, ZNF856B, hRIT1-alpha
BCL2L1	598	ENST00000307677	NM_138578.1	ENST00000307677	NM_138578.1	No	No	4	Yes	Yes	Yes	Yes	No	No	No	BCL2L, BCLX, Bcl-X, PPP1R52, bcl-xL, bcl-xS
BMPR1A	657	ENST00000372037	NM_004329.2	ENST00000372037	NM_004329.2	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	ACVRLK3, ALK3, CD292
CDKN1A	1026	ENST00000244741	NM_078467.2	ENST00000244741	NM_078467.2	No	Yes	4	Yes	Yes	Yes	Yes	No	No	No	CAP20, CDKN1, SDI1, WAF1, p21CIP1, p21Cip1/Waf1
CIITA	4261	ENST00000324288	NM_001286402	ENST00000324288	NM_000246.3	No	Yes	4	Yes	No	Yes	No	Yes	No	Yes	MHC2TA, NLRA
CUL3	8452	ENST00000264414	NM_003590.4	ENST00000264414	NM_003590.4	No	Yes	4	Yes	Yes	Yes	Yes	No	No	No	
CUX1	1523	ENST00000292535	NM_181552.3	ENST00000292535	NM_181552.3	No	Yes	4	Yes	No	Yes	No	Yes	No	Yes	CDP, CDP/Cut, CDP/Cux, CDP1, CUT, CUTL1, CUX, Clox, Cux/CDP, GOLIM6
DDX3X	1654	ENST00000399959	NM_001356.4	ENST00000478993	NM_001356.4	No	Yes	4	Yes	No	Yes	No	Yes	No	Yes	DBX, DDX14, DDX3
DICER1	23405	ENST00000393063	NM_177438.2	ENST00000393063	NM_177438.2	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	Dicer, HERNA, K12H4.8-LIKE, KIAA0928, MNG1
DIS3	22894	ENST00000377767	NM_014953.3	ENST00000377767	NM_014953.3	No	Yes	4	Yes	Yes	Yes	Yes	No	No	No	EXOSC11, KIAA1008, RRP44, dis3p
DNAJB1	3337	ENST00000254322	NM_006145.1	ENST00000254322	NM_006145.1	No	No	4	Yes	Yes	Yes	No	No	No	Yes	HSPF1, Hsp40, RSPH16B, Sis1
DNMT1	1786	ENST00000340748	NM_001379.2	ENST00000340748	NM_001379.2	Yes	No	4	Yes	Yes	Yes	No	No	Yes	No	CXXC9, DNMT, MCMT
DROSHA	29102	ENST00000344624	NM_013235.4	ENST00000344624	NM_013235.4	No	No	4	Yes	Yes	Yes	No	No	No	Yes	Etohi2, HSA242976, RN3, RNASE3L, RNASEN
EPAS1	2034	ENST00000263734	NM_001430.4	ENST00000263734	NM_001430.4	No	No	4	Yes	Yes	Yes	No	No	No	Yes	HIF2A, MOP2, PASD2, bHLHe73
EPHA5	2044	ENST00000273854	NM_004439.5	ENST00000273854	NM_004439.5	No	No	4	Yes	Yes	Yes	No	Yes	No	No	CEK7, Hek7
EPHA7	2045	ENST00000369303	NM_004440.3	ENST00000369303	NM_004440.3	Yes	Yes	4	Yes	Yes	Yes	No	Yes	No	No	Hek11
ERCC2	2068	ENST00000391945	NM_000400.3	ENST00000391945	NM_000400.3	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	EM9, MGC102762, MGC126218, MGC126219, XPD
ERCC3	2071	ENST00000285398	NM_000122.1	ENST00000285398	NM_000122.1	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	RAD25, XPB
ERCC5	2073	ENST00000355739	NM_000123.3	ENST00000652225	NM_000123.4	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	ERCM2, XPGC
ERRFI1	54206	ENST00000377482	NM_018948.3	ENST00000377482	NM_018948.3	No	Yes	4	Yes	Yes	Yes	Yes	No	No	No	GENE-33, MIG-6, RALT
ETV4	2118	ENST00000319349	NM_001079675.2	ENST00000319349	NM_001079675.2	Yes	No	4	Yes	No	No	Yes	Yes	No	Yes	E1A-F, E1AF, PEA3
ETV5	2119	ENST00000306376	NM_004454.2	ENST00000306376	NM_004454.2	Yes	No	4	Yes	No	No	Yes	Yes	No	Yes	ERM
EWSR1	2130	ENST00000397938	NM_005243.3	ENST00000397938	NM_005243.3	Yes	No	4	Yes	No	No	Yes	Yes	No	Yes	EWS
FANCD2	2177	ENST00000383807	NM_001018115.1	ENST00000675286	NM_001018115.1	No	Yes	4	Yes	No	Yes	No	Yes	No	Yes	FA-D2, FACD, FANCD
FANCG	2189	ENST00000378643	NM_004629	ENST00000378643	NM_004629	No	Yes	4	Yes	No	No	Yes	Yes	No	Yes	FAG, XRCC9
FAT1	2195	ENST00000441802	NM_005245.3	ENST00000441802	NM_005245.3	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	CDHF7, CDHR8, FAT
FBXO11	80204	ENST00000403359	NM_001190274.1	ENST00000403359	NM_001190274.1	No	Yes	4	Yes	No	Yes	No	Yes	No	Yes	FBX11, UBR6
FOXA1	3169	ENST00000250448	NM_004496.3	ENST00000250448	NM_004496.3	Yes	Yes	4	Yes	Yes	Yes	No	No	No	Yes	HNF3A
GLI1	2735	ENST00000228682	NM_005269.2	ENST00000228682	NM_005269.2	Yes	No	4	Yes	Yes	Yes	No	Yes	No	No	GLI
GNA13	10672	ENST00000439174	NM_006572.5	ENST00000439174	NM_006572.5	Yes	Yes	4	Yes	No	Yes	Yes	Yes	No	No	G13, MGC46138
H1-2	3006	ENST00000343677	NM_005319.3	ENST00000343677	NM_005319.3	No	No	4	Yes	Yes	Yes	No	Yes	No	No	H1.2, H1F2, H1c, H1s-1, HIST1H1C
H3-3B	3021	ENST00000254810	NM_005324.3	ENST00000254810	NM_005324.3	No	No	4	Yes	Yes	Yes	No	No	No	Yes	H3.3B, H3F3B
HDAC1	3065	ENST00000373548	NM_004964.2	ENST00000373548	NM_004964.2	Yes	No	4	Yes	No	Yes	Yes	Yes	No	No	GON-10, HD1, KDAC1, RPD3L1
HLA-A	3105	ENST00000376809	NM_001242758.1	ENST00000376809	NM_001242758.1	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	
IKZF3	22806	ENST00000346872	NM_012481.4	ENST00000346872	NM_012481.4	Yes	Yes	4	Yes	No	Yes	No	Yes	No	Yes	Aiolos, ZNFN1A3
INHBA	3624	ENST00000242208	NM_002192.2	ENST00000242208	NM_002192.2	Yes	Yes	4	Yes	Yes	Yes	No	Yes	No	No	
LATS1	9113	ENST00000253339	NM_004690.3	ENST00000253339	NM_004690.3	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	WARTS
LATS2	26524	ENST00000382592	NM_014572.2	ENST00000382592	NM_014572.2	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	
LYN	4067	ENST00000519728	NM_002350.3	ENST00000519728	NM_002350.3	Yes	No	4	Yes	Yes	Yes	Yes	No	No	No	JTK8
MAF	4094	ENST00000393350	NM_001031804.2	ENST00000393350	NM_001031804.2	No	No	4	Yes	No	No	Yes	Yes	No	Yes	c-MAF
MAP3K14	9020	ENST00000344686	NM_003954.3	ENST00000344686	NM_003954.3	Yes	No	4	Yes	Yes	Yes	No	Yes	No	No	FTDCR1B, HS, HSNIK
MAX	4149	ENST00000358664	NM_002382.4	ENST00000358664	NM_002382.4	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	bHLHd4, bHLHd5, bHLHd6, bHLHd7, bHLHd8
MLLT1	4298	ENST00000252674	NM_005934.3	ENST00000252674	NM_005934.3	No	No	4	Yes	Yes	No	No	Yes	No	Yes	ENL, LTG19, YEATS1
MST1R	4486	ENST00000296474	NM_002447.2	ENST00000296474	NM_002447.2	Yes	No	4	Yes	Yes	Yes	Yes	No	No	No	CD136, CDw136, PTK8, RON, SEA
MYB	4602	ENST00000367814	NM_005375	ENST00000367814	NM_005375	Yes	No	4	Yes	No	No	Yes	Yes	No	Yes	c-myb
MYOD1	4654	ENST00000250003	NM_002478.4	ENST00000250003	NM_002478.4	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	MYF3, MYOD, bHLHc1
NCOR2	9612	ENST00000405201	NM_006312.6	ENST00000405201	NM_006312.6	No	No	4	Yes	No	Yes	No	Yes	No	Yes	CTG26, SMRT, SMRTE, TNRC14, TRAC-1
NOTCH3	4854	ENST00000263388	NM_000435.2	ENST00000263388	NM_000435.2	Yes	Yes	4	Yes	Yes	Yes	Yes	No	No	No	CADASIL, CASIL
NUP93	9688	ENST00000308159	NM_014669.4	ENST00000308159	NM_014669.4	No	No	4	Yes	Yes	Yes	No	Yes	No	No	KIAA0095
PARP1	142	ENST00000366794	NM_001618.3	ENST00000366794	NM_001618.3	No	Yes	4	Yes	Yes	Yes	Yes	No	No	No	ADPRT, ARTD1, PARP, PPOL
PHOX2B	8929	ENST00000226382	NM_003924.3	ENST00000226382	NM_003924.3	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	NBPhox, PMX2B
PIK3C2G	5288	ENST00000266497	NM_004570.4	ENST00000433979	NM_004570.4	No	No	4	Yes	Yes	Yes	Yes	No	No	No	
PIK3CG	5294	ENST00000359195	NM_002649.2	ENST00000359195	NM_002649.2	Yes	No	4	Yes	Yes	Yes	No	Yes	No	No	
PIK3R2	5296	ENST00000222254	NM_005027.3	ENST00000222254	NM_005027.3	No	Yes	4	Yes	Yes	Yes	No	Yes	No	No	P85B
PLCG2	5336	ENST00000359376	NM_002661.3	ENST00000564138	NM_002661.3	Yes	No	4	Yes	Yes	Yes	No	Yes	No	No	
PPM1D	8493	ENST00000305921	NM_003620.3	ENST00000305921	NM_003620.3	Yes	No	4	Yes	Yes	Yes	No	No	No	Yes	PP2C-DELTA, Wip1
PPP6C	5537	ENST00000373547	NM_002721.4	ENST00000373547	NM_002721.4	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	PP6
PREX2	80243	ENST00000288368	NM_024870.2	ENST00000288368	NM_024870.2	No	No	4	Yes	Yes	Yes	No	No	No	Yes	DEP.2, DEPDC2, FLJ12987, P-REX2, PPP1R129
PRKCI	5584	ENST00000295797	NM_002740.5	ENST00000295797	NM_002740.5	Yes	No	4	Yes	Yes	Yes	Yes	No	No	No	DXS1179E, PKCI
PRKN	5071	ENST00000366898	NM_004562.2	ENST00000366898	NM_004562.2	No	Yes	4	Yes	Yes	Yes	Yes	No	No	No	AR-JP, PARK2, PDJ, parkin
PTPRT	11122	ENST00000373198	NM_133170.3	ENST00000373198	NM_133170.3	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	KIAA0283, RPTPrho
RAD51C	5889	ENST00000337432	NM_058216.2	ENST00000337432	NM_058216.2	No	Yes	4	Yes	Yes	Yes	Yes	No	No	No	FANCO, RAD51L2
RAD51D	5892	ENST00000345365	NM_002878.3	ENST00000345365	NM_002878.3	No	Yes	4	Yes	Yes	Yes	Yes	No	No	No	HsTRAD, R51H3, RAD51L3, Trad
RAD52	5893	ENST00000358495	NM_134424.2	ENST00000358495	NM_134424.2	No	No	4	Yes	Yes	Yes	Yes	No	No	No	
RAD54L	8438	ENST00000371975	NM_001142548.1	ENST00000371975	NM_001142548.1	No	No	4	Yes	Yes	Yes	Yes	No	No	No	RAD54A, hHR54, hRAD54
RECQL4	9401	ENST00000428558	NM_004260.3	ENST00000617875	NM_004260.4	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	RecQ4
RRAS2	22800	ENST00000256196	NM_012250.5	ENST00000256196	NM_012250.5	Yes	No	4	Yes	Yes	Yes	No	No	No	Yes	TC21
RUNX1T1	862	ENST00000265814	NM_001198626.1	ENST00000265814	NM_001198626.1	Yes	No	4	Yes	No	Yes	No	Yes	No	Yes	AML1T1, CBFA2T1, ETO, MTG8, ZMYND2
SDHAF2	54949	ENST00000301761	NM_017841.2	ENST00000301761	NM_017841.2	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	C11orf79, FLJ20487, PGL2, SDH5
SGK1	6446	ENST00000237305	NM_005627.3	ENST00000237305	NM_005627.3	Yes	No	4	Yes	No	Yes	Yes	Yes	No	No	SGK
SH2B3	10019	ENST00000341259	NM_005475.2	ENST00000341259	NM_005475.2	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	IDDM20, LNK
SMAD3	4088	ENST00000327367	NM_005902.3	ENST00000327367	NM_005902.3	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	HsT17436, JV15-2, MADH3
STAT5A	6776	ENST00000345506	NM_003152.3	ENST00000345506	NM_003152.3	Yes	No	4	Yes	Yes	Yes	No	Yes	No	No	STAT5
STAT6	6778	ENST00000300134	NM_001178078.1	ENST00000300134	NM_001178078.1	Yes	No	4	Yes	No	Yes	No	Yes	No	Yes	D12S1644, IL-4-STAT
TBL1XR1	79718	ENST00000430069	NM_024665.4	ENST00000430069	NM_024665.4	Yes	No	4	Yes	No	Yes	No	Yes	No	Yes	C21, DC42, FLJ12894, IRA1, TBLR1
TCF7L2	6934	ENST00000543371	NM_001146274.1	ENST00000627217	NM_001146274.1	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	TCF-4
TEK	7010	ENST00000380036	NM_000459.3	ENST00000380036	NM_000459.3	No	No	4	Yes	Yes	Yes	Yes	No	No	No	CD202b, TIE-2, TIE2, VMCM, VMCM1
TMEM127	55654	ENST00000258439	NM_001193304.2	ENST00000258439	NM_001193304.2	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	FLJ20507, FLJ22257
TRAF2	7186	ENST00000247668	NM_021138.3	ENST00000247668	NM_021138.3	No	No	4	Yes	Yes	Yes	No	Yes	No	No	RNF117, TRAP3
VEGFA	7422	ENST00000523873	NM_001171623.1	ENST00000523873	NM_001171623.1	Yes	No	4	Yes	Yes	Yes	Yes	No	No	No	VEGF, VEGF-A, VPF
WWTR1	25937	ENST00000360632	NM_001168280.1	ENST00000360632	NM_001168280.1	Yes	No	4	Yes	Yes	Yes	No	No	No	Yes	DKFZp586I1419
XRCC2	7516	ENST00000359321	NM_005431.1	ENST00000359321	NM_005431.1	No	Yes	4	Yes	Yes	Yes	Yes	No	No	No	FANCU
ZFHX3	463	ENST00000268489	NM_006885.3	ENST00000268489	NM_006885.3	No	Yes	4	Yes	Yes	Yes	No	No	No	Yes	ATBF1, C16orf47, FLJ26184, ZNF927
ABL2	27	ENST00000502732	NM_007314.3	ENST00000502732	NM_007314.3	Yes	No	3	Yes	No	No	No	Yes	No	Yes	ABLL
ABRAXAS1	84142	ENST00000321945	NM_139076.2	ENST00000321945	NM_139076.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	ABRA1, ABRAXAS, CCDC98, FAM175A, FLJ13614
AFF4	27125	ENST00000265343	NM_014423	ENST00000265343	NM_014423	Yes	No	3	Yes	No	No	No	Yes	No	Yes	AF5Q31, MCEF
AGO2	27161	ENST00000220592	NM_012154.3	ENST00000220592	NM_012154.3	No	No	3	Yes	Yes	Yes	No	No	No	No	CASC7, EIF2C2, LINC00980, Q10, hAGO2
ANKRD11	29123	ENST00000301030	NM_013275.5	ENST00000301030	NM_013275.5	No	Yes	3	Yes	Yes	Yes	No	No	No	No	LZ16, T13
ARHGAP26	23092	ENST00000274498	NM_015071	ENST00000274498	NM_015071	Yes	Yes	3	Yes	No	No	No	Yes	No	Yes	GRAF, KIAA0621, OPHN1L, OPHN1L1
ARHGAP35	2909	ENST00000404338	NM_004491.4	ENST00000404338	NM_004491.4	Yes	Yes	3	Yes	Yes	No	No	No	No	Yes	GRF-1, GRLF1, KIAA1722, P190A, p190ARhoGAP, p190RhoGAP
ARHGEF12	23365	ENST00000397843	NM_015313	ENST00000397843	NM_015313	Yes	Yes	3	Yes	No	No	No	Yes	No	Yes	KIAA0382, LARG
ARID5B	84159	ENST00000279873	NM_032199.2	ENST00000279873	NM_032199.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	FLJ21150, MRF2
ASXL2	55252	ENST00000435504	NM_018263.4	ENST00000435504	NM_018263.4	No	Yes	3	Yes	Yes	Yes	No	No	No	No	ASXH2, FLJ10898, KIAA1685
ATF1	466	ENST00000262053	NM_005171.4	ENST00000262053	NM_005171.4	Yes	No	3	Yes	No	No	No	Yes	No	Yes	TREB36
ATIC	471	ENST00000236959	NM_004044	ENST00000236959	NM_004044	Yes	No	3	Yes	No	No	No	Yes	No	Yes	AICARFT, IMPCHASE, PURH
BABAM1	29086	ENST00000359435	NM_001033549.1	ENST00000359435	NM_001033549.1	No	No	3	Yes	Yes	Yes	No	No	No	No	C19orf62, FLJ20571, HSPC142, MERIT40, NBA1
BBC3	27113	ENST00000449228	NM_001127240.2	ENST00000449228	NM_001127240.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	JFY1, PUMA
BCL2L11	10018	ENST00000393256	NM_138621.4	ENST00000393256	NM_138621.4	No	Yes	3	Yes	Yes	Yes	No	No	No	No	BIM, BOD, BimEL, BimL, BimS
BCL2L2	599	ENST00000250405	NM_004050	ENST00000250405	NM_004050	Yes	No	3	Yes	No	No	Yes	Yes	No	No	BCL-W, KIAA0271, PPP1R51
BCL3	602	ENST00000164227	NM_005178	ENST00000164227	NM_005178	Yes	No	3	Yes	No	No	No	Yes	No	Yes	BCL4, D19S37
BCL7A	605	ENST00000261822	NM_001024808	ENST00000261822	NM_001024808	No	Yes	3	Yes	No	No	No	Yes	No	Yes	BCL7
BCL9	607	ENST00000234739	NM_004326.3	ENST00000234739	NM_004326.3	Yes	No	3	Yes	No	No	No	Yes	No	Yes	
BTG2	7832	ENST00000290551	NM_006763	ENST00000290551	NM_006763	No	Yes	3	Yes	No	No	Yes	Yes	No	No	APRO1, MGC126063, MGC126064, TIS21
CARM1	10498	ENST00000327064	NM_199141.1	ENST00000327064	NM_199141.1	No	No	3	Yes	Yes	Yes	No	No	No	No	PRMT4
CBFA2T3	863	ENST00000268679	NM_005187	ENST00000268679	NM_005187	No	Yes	3	Yes	No	No	No	Yes	No	Yes	ETO2, MTG16, MTGR2, RUNX1T3, ZMYND4
CCNQ	92002	ENST00000576892	NM_152274.4	ENST00000576892	NM_152274.4	No	Yes	3	Yes	Yes	Yes	No	No	No	No	CycM, FAM58A
CD22	933	ENST00000085219	NM_001771	ENST00000085219	NM_001771	No	No	3	Yes	No	No	Yes	Yes	No	No	SIGLEC-2, SIGLEC2
CD276	80381	ENST00000318443	NM_001024736.1	ENST00000318443	NM_001024736.1	Yes	No	3	Yes	Yes	Yes	No	No	No	No	B7-H3, B7H3, B7RP-2
CD58	965	ENST00000369489	NM_001779.2	ENST00000369489	NM_001779.2	No	Yes	3	Yes	No	Yes	No	Yes	No	No	LFA3
CD70	970	ENST00000245903	NM_001252	ENST00000245903	NM_001252	Yes	No	3	Yes	No	No	Yes	Yes	No	No	CD27L, CD27LG, TNFSF7
CD74	972	ENST00000009530	NM_001025159	ENST00000009530	NM_001025159	Yes	No	3	Yes	No	No	Yes	No	No	Yes	DHLAG
CDC42	998	ENST00000344548	NM_001791.3	ENST00000344548	NM_001791.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	CDC42Hs, G25K
CENPA	1058	ENST00000335756	NM_001809.3	ENST00000335756	NM_001809.3	No	No	3	Yes	Yes	Yes	No	No	No	No	CENP-A, CenH3
CLTCL1	8218	ENST00000427926	NM_007098	ENST00000427926	NM_007098	No	No	3	Yes	No	No	No	Yes	No	Yes	CHC22, CLH22, CLTCL, CLTD
CNTRL	11064	ENST00000238341	NM_007018	ENST00000373855	NM_007018.6	No	No	3	Yes	No	No	No	Yes	No	Yes	CEP1, CEP110
COL1A1	1277	ENST00000225964	NM_000088	ENST00000225964	NM_000088	Yes	No	3	Yes	No	No	No	Yes	No	Yes	
COP1	64326	ENST00000367669	NM_022457.5	ENST00000367669	NM_022457.5	Yes	Yes	3	Yes	Yes	Yes	No	No	No	No	CFAP78, FAP78, FLJ10416, RFWD2, RNF200
CSDE1	7812	ENST00000438362	NM_001242891.1	ENST00000438362	NM_001242891.1	No	No	3	Yes	Yes	Yes	No	No	No	No	D1S155E
CTLA4	1493	ENST00000302823	NM_005214.4	ENST00000648405	NM_005214.4	Yes	No	3	Yes	Yes	Yes	No	No	No	No	CD152, CELIAC3, CTLA-4, GSE, IDDM12
CTNNA1	1495	ENST00000302763	NM_001903	ENST00000302763	NM_001903	No	Yes	3	Yes	No	No	Yes	Yes	No	No	CAP102
CYSLTR2	57105	ENST00000282018	NM_020377.2	ENST00000282018	NM_020377.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	CYSLT2R, CysLT(2)
DCUN1D1	54165	ENST00000292782	NM_020640.2	ENST00000292782	NM_020640.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	DCUN1L1, RP42, SCCRO, SCRO, Tes3
DDIT3	1649	ENST00000346473	NM_001195057.1	ENST00000346473	NM_001195057.1	No	No	3	Yes	No	No	No	Yes	No	Yes	CHOP, CHOP10, GADD153
DEK	7913	ENST00000397239	NM_003472.3	ENST00000652689	NM_003472.4	Yes	No	3	Yes	No	No	No	Yes	No	Yes	D6S231E
DNM2	1785	ENST00000355667	NM_001005360	ENST00000355667	NM_001005360	Yes	No	3	Yes	No	No	No	Yes	No	Yes	CMT2M, CMTDI1, CMTDIB, DI-CMTB, DYN2, DYNII
DNMT3B	1789	ENST00000328111	NM_006892.3	ENST00000328111	NM_006892.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	
DTX1	1840	ENST00000257600	NM_004416.2	ENST00000257600	NM_004416.2	No	Yes	3	Yes	No	Yes	No	Yes	No	No	RNF140, hDx-1
DUSP22	56940	ENST00000344450	NM_020185.4	ENST00000344450	NM_020185.4	No	Yes	3	Yes	No	Yes	No	Yes	No	No	JKAP, JSP1, MKPX, VHX
DUSP4	1846	ENST00000240100	NM_001394.6	ENST00000240100	NM_001394.6	No	Yes	3	Yes	Yes	Yes	No	No	No	No	HVH2, MKP-2, TYP
E2F3	1871	ENST00000346618	NM_001949.4	ENST00000346618	NM_001949.4	Yes	No	3	Yes	Yes	Yes	No	No	No	No	
EBF1	1879	ENST00000313708	NM_024007	ENST00000313708	NM_024007	No	No	3	Yes	No	No	No	Yes	No	Yes	COE1, EBF, OLF1
EGFL7	51162	ENST00000308874	NM_201446.2	ENST00000308874	NM_201446.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	ZNEU1
EIF1AX	1964	ENST00000379607	NM_001412.3	ENST00000379607	NM_001412.3	No	No	3	Yes	Yes	Yes	No	No	No	No	EIF1A, EIF4C, eIF-1A, eIF-4C
EIF4E	1977	ENST00000280892	NM_001130678.1	ENST00000280892	NM_001130678.1	Yes	No	3	Yes	Yes	Yes	No	No	No	No	EIF4E1, EIF4EL1, EIF4F
ELF3	1999	ENST00000359651	NM_004433.4	ENST00000359651	NM_004433.4	Yes	Yes	3	Yes	Yes	Yes	No	No	No	No	EPR-1, ERT, ESE-1, ESX
ELF4	2000	ENST00000308167	NM_001127197	ENST00000308167	NM_001127197	Yes	No	3	Yes	No	No	No	Yes	No	Yes	ELFR
ELL	8178	ENST00000262809	NM_006532	ENST00000262809	NM_006532	Yes	No	3	Yes	No	No	No	Yes	No	Yes	C19orf17, ELL1, Men, PPP1R68
ELOC	6921	ENST00000284811	NM_005648.3	ENST00000284811	NM_005648.3	No	No	3	Yes	Yes	Yes	No	No	No	No	TCEB1
EMSY	56946	ENST00000334736	NM_020193	ENST00000334736	NM_020193	Yes	No	3	Yes	No	No	Yes	Yes	No	No	C11orf30
EPCAM	4072	ENST00000263735	NM_002354.2	ENST00000263735	NM_002354.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	17-1A, 323/A3, CD326, CO-17A, EGP-2, EGP34, EGP40, Ep-CAM, GA733-2, HEA125, KS1/4, KSA, Ly74, M4S1, MH99, MIC18, MK-1, MOC31, TACST-1, TACSTD1, TROP1
ERF	2077	ENST00000222329	NM_006494.2	ENST00000222329	NM_006494.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	PE-2, PE2
ETNK1	55500	ENST00000266517	NM_018638.4	ENST00000671733	NM_018638.4	No	No	3	Yes	No	Yes	No	No	No	Yes	EKI, EKI1
EZH1	2145	ENST00000428826	NM_001991.3	ENST00000428826	NM_001991.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	KIAA0388, KMT6B
FANCE	2178	ENST00000229769	NM_021922	ENST00000229769	NM_021922	No	Yes	3	Yes	No	No	No	Yes	No	Yes	FACE, FAE
FANCF	2188	ENST00000327470	NM_022725	ENST00000327470	NM_022725	No	Yes	3	Yes	No	No	No	Yes	No	Yes	
FANCL	55120	ENST00000233741	NM_018062.3	ENST00000233741	NM_018062.3	No	Yes	3	Yes	No	No	Yes	Yes	No	No	FAAP43, FLJ10335, PHF9, Pog
FEV	54738	ENST00000295727	NM_017521.2	ENST00000295727	NM_017521.2	No	No	3	Yes	No	No	No	Yes	No	Yes	Pet-1
FGF10	2255	ENST00000264664	NM_004465	ENST00000264664	NM_004465	Yes	No	3	Yes	No	No	Yes	Yes	No	No	
FGF14	2259	ENST00000376143	NM_004115	ENST00000376143	NM_004115	No	Yes	3	Yes	No	No	Yes	Yes	No	No	FHF4, SCA27
FGF23	8074	ENST00000237837	NM_020638	ENST00000237837	NM_020638	Yes	No	3	Yes	No	No	Yes	Yes	No	No	
FGF6	2251	ENST00000228837	NM_020996	ENST00000228837	NM_020996	Yes	No	3	Yes	No	No	Yes	Yes	No	No	
FHIT	2272	ENST00000468189	NM_001166243	ENST00000492590	NM_002012	No	Yes	3	Yes	No	No	No	Yes	No	Yes	FRA3B
FLI1	2313	ENST00000527786	NM_002017.4	ENST00000527786	NM_002017.4	Yes	No	3	Yes	No	No	No	Yes	No	Yes	SIC-1
FOXO3	2309	ENST00000343882	NM_001455	ENST00000343882	NM_001455	No	No	3	Yes	No	No	No	Yes	No	Yes	AF6q21, FKHRL1, FOXO2, FOXO3A
FUS	2521	ENST00000254108	NM_004960	ENST00000254108	NM_004960	Yes	No	3	Yes	No	No	No	Yes	No	Yes	ALS6, HNRNPP2, TLS, hnRNP-P2
FYN	2534	ENST00000368678	NM_153047.3	ENST00000368678	NM_153047.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	MGC45350
GNA12	2768	ENST00000275364	NM_007353.2	ENST00000275364	NM_007353.2	Yes	No	3	Yes	No	Yes	No	Yes	No	No	gep
GNB1	2782	ENST00000378609	NM_001282539.1	ENST00000378609	NM_001282539.1	Yes	No	3	Yes	Yes	Yes	No	No	No	No	
GPS2	2874	ENST00000380728	NM_004489.4	ENST00000380728	NM_004489.4	No	Yes	3	Yes	Yes	Yes	No	No	No	No	
GREM1	26585	ENST00000300177	NM_013372.6	ENST00000300177	NM_013372.6	Yes	No	3	Yes	Yes	Yes	No	No	No	No	CKTSF1B1, CRAC1, DAND2, DRM, HMPS, gremlin
H1-3	3007	ENST00000244534	NM_005320.2	ENST00000244534	NM_005320.2	No	Yes	3	Yes	No	Yes	No	Yes	No	No	H1.3, H1F3, H1d, H1s-2, HIST1H1D
H1-4	3008	ENST00000304218	NM_005321.2	ENST00000304218	NM_005321.2	Yes	No	3	Yes	No	Yes	No	Yes	No	No	H1.4, H1F4, H1e, H1s-4, HIST1H1E
H2AC11	8969	ENST00000359193	NM_021064.4	ENST00000359193	NM_021064.5	No	No	3	Yes	No	Yes	No	Yes	No	No	H2A.1b, H2A/p, H2AFP, HIST1H2AG
H2AC16	8332	ENST00000357320	NM_003511	ENST00000613174	NM_003511.3	No	No	3	Yes	No	Yes	No	Yes	No	No	H2A/i, H2AFI, HIST1H2AL, dJ193B12.9
H2AC17	8336	ENST00000359611	NM_003514	ENST00000359611	NM_003514	Yes	No	3	Yes	No	Yes	No	Yes	No	No	H2A.1, H2A/n, H2AFN, HIST1H2AM
H2AC6	8334	ENST00000314088	NM_003512.3	ENST00000314088	NM_003512.3	No	No	3	Yes	No	Yes	No	Yes	No	No	H2AFL, HIST1H2AC
H2BC11	8970	ENST00000339812	NM_021058.3	ENST00000339812	NM_021058.3	No	No	3	Yes	No	Yes	No	Yes	No	No	H2B/r, H2BFR, HIST1H2BJ
H2BC12	85236	ENST00000356950	NM_080593.2	ENST00000356950	NM_080593.2	No	No	3	Yes	No	Yes	No	Yes	No	No	H2BFAiii, H2BFT, HIST1H2BK
H2BC17	8348			ENST00000616182	NM_003527.4	No	No	3	Yes	No	Yes	No	Yes	No	No	H2B.2, H2B/n, H2BFN, HIST1H2BO
H2BC4	8347	ENST00000314332	NM_003518.3	ENST00000314332	NM_003518.3	No	No	3	Yes	No	Yes	No	Yes	No	No	H2B/l, H2BFL, HIST1H2BC
H2BC5	3017	ENST00000289316	NM_021063.3	ENST00000289316	NM_021063.3	No	No	3	Yes	Yes	Yes	No	No	No	No	H2B/b, H2BFB, HIST1H2BD
H3-4	8290	ENST00000366696	NM_003493.2	ENST00000366696	NM_003493.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3.4, H3/g, H3FT, H3t, HIST3H3
H3-5	440093	ENST00000340398	NM_001013699.2	ENST00000340398	NM_001013699.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3.5, H3F3C
H3C1	8350	ENST00000357647	NM_003529.2	ENST00000613854	NM_003529.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3/A, H3FA, HIST1H3A
H3C10	8357	ENST00000369163	NM_003536.2	ENST00000369163	NM_003536.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3/k, H3F1K, H3FK, HIST1H3H
H3C11	8354	ENST00000328488	NM_003533.2	ENST00000616365	NM_003533.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3.f, H3/f, H3FF, HIST1H3I
H3C12	8356	ENST00000359303	NM_003535.2	ENST00000359303	NM_003535.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3/j, H3FJ, HIST1H3J
H3C13	653604	ENST00000331491	NM_001123375.2	ENST00000331491	NM_001123375.2	No	No	3	Yes	Yes	Yes	No	No	No	No	HIST2H3D
H3C14	126961	ENST00000369158	NM_021059.2	ENST00000369158	NM_021059.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3, H3.2, H3/M, H3/m, H3F2, H3FM, HIST2H3C, MGC9629
H3C3	8352	ENST00000540144	NM_003531.2	ENST00000612966	NM_003531.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3/c, H3FC, HIST1H3C
H3C4	8351	ENST00000356476	NM_003530.4	ENST00000356476	NM_003530.4	No	No	3	Yes	Yes	Yes	No	No	No	No	H3/b, H3FB, HIST1H3D
H3C6	8353	ENST00000360408	NM_003532.2	ENST00000634733	NM_003532.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3.1, H3/d, H3FD, HIST1H3E
H3C7	8968	ENST00000446824	NM_021018.2	ENST00000618052	NM_021018.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3/i, H3FI, HIST1H3F
H3C8	8355	ENST00000305910	NM_003534.2	ENST00000614378	NM_003534.2	No	No	3	Yes	Yes	Yes	No	No	No	No	H3/h, H3FH, HIST1H3G
HDAC4	9759	ENST00000345617	NM_006037.3	ENST00000345617	NM_006037.3	Yes	Yes	3	Yes	No	Yes	No	Yes	No	No	BDMR, HA6116, HD4, HDAC-4, HDAC-A, HDACA, KIAA0288
HDAC7	51564	ENST00000427332	XM_011538481.1	ENST00000427332	XM_011538481.1	Yes	No	3	Yes	No	Yes	No	Yes	No	No	DKFZP586J0917, HDAC7A
HIF1A	3091	ENST00000337138	NM_001530.3	ENST00000337138	NM_001530.3	Yes	No	3	Yes	No	Yes	No	No	No	Yes	HIF-1alpha, HIF1, MOP1, PASD8, bHLHe78
HLA-B	3106	ENST00000412585	NM_005514.6	ENST00000412585	NM_005514.6	No	Yes	3	Yes	Yes	Yes	No	No	No	No	AS
HMGA1	3159	ENST00000311487	NM_145899	ENST00000311487	NM_145899	Yes	No	3	Yes	No	No	No	Yes	No	Yes	HMGIY
HMGA2	8091	ENST00000403681	NM_003483	ENST00000403681	NM_003483	Yes	No	3	Yes	No	No	No	Yes	No	Yes	BABL, HMGIC, LIPO
HOXA11	3207	ENST00000006015	NM_005523	ENST00000006015	NM_005523	No	Yes	3	Yes	No	No	No	Yes	No	Yes	HOX1, HOX1I
HOXB13	10481	ENST00000290295	NM_006361.5	ENST00000290295	NM_006361.5	Yes	Yes	3	Yes	Yes	Yes	No	No	No	No	
HSP90AA1	3320	ENST00000216281	NM_005348	ENST00000216281	NM_005348	Yes	No	3	Yes	No	No	No	Yes	No	Yes	FLJ31884, HSP90N, HSPC1, HSPCA, Hsp89, Hsp90
ICOSLG	23308	ENST00000407780	NM_015259.4	ENST00000407780	NM_015259.4	Yes	No	3	Yes	Yes	Yes	No	No	No	No	B7-H2, B7H2, B7RP-1, B7RP1, B7h, CD275, GL50, ICOS-L, ICOSL, KIAA0653
IFNGR1	3459	ENST00000367739	NM_000416.2	ENST00000367739	NM_000416.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	CD119, IFNGR
IGF1	3479	ENST00000307046	NM_001111285.1	ENST00000307046	NM_001111285.1	Yes	No	3	Yes	Yes	Yes	No	No	No	No	IGF, IGF-I, IGF1A, IGFI
IGF2	3481	ENST00000434045	NM_001127598.1	ENST00000434045	NM_001127598.1	Yes	No	3	Yes	Yes	Yes	No	No	No	No	C11orf43, FLJ44734, IGF-II
IL10	3586	ENST00000423557	NM_000572.2	ENST00000423557	NM_000572.2	No	No	3	Yes	Yes	Yes	No	No	No	No	CSIF, IL-10, IL10A
INHA	3623	ENST00000243786	NM_002191.3	ENST00000243786	NM_002191.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	
INPP4A	3631	ENST00000074304	NM_001134224.1	ENST00000074304	NM_001134224.1	No	No	3	Yes	Yes	Yes	No	No	No	No	INPP4
INPPL1	3636	ENST00000298229	NM_001567.3	ENST00000298229	NM_001567.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	SHIP2
INSR	3643	ENST00000302850	NM_000208.2	ENST00000302850	NM_000208.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	CD220
IRF1	3659	ENST00000245414	NM_002198.2	ENST00000245414	NM_002198.2	No	Yes	3	Yes	No	Yes	No	Yes	No	No	MAR
IRF8	3394	ENST00000268638	NM_002163.2	ENST00000268638	NM_002163.2	No	Yes	3	Yes	No	Yes	No	Yes	No	No	ICSBP, ICSBP1, IRF-8
IRS1	3667	ENST00000305123	NM_005544.2	ENST00000305123	NM_005544.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	HIRS-1
JARID2	3720	ENST00000341776	NM_004973.3	ENST00000341776	NM_004973.3	Yes	Yes	3	Yes	No	Yes	No	Yes	No	No	JMJ
KAT6A	7994	ENST00000265713	NM_006766.4	ENST00000265713	NM_006766.4	No	No	3	Yes	No	No	No	Yes	No	Yes	MOZ, MYST3, RUNXBP2, ZC2HC6A, ZNF220
KLHL6	89857	ENST00000341319	NM_130446	ENST00000341319	NM_130446	Yes	Yes	3	Yes	No	No	Yes	Yes	No	No	FLJ00029
KMT2B	9757	ENST00000222270	NM_014727.1	ENST00000420124	NM_014727.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	CXXC10, HRX2, KIAA0304, MLL1B, MLL4, TRX2, WBP7
KMT5A	387893	ENST00000330479	NM_020382.3	ENST00000402868	NM_020382.7	No	No	3	Yes	Yes	Yes	No	No	No	No	PR-Set7, SET07, SET8, SETD8
KNSTRN	90417	ENST00000249776	NM_033286.3	ENST00000249776	NM_033286.3	No	No	3	Yes	Yes	Yes	No	No	No	No	C15orf23, FLJ14502, SKAP, TRAF4AF1, kinastrin
LCK	3932	ENST00000336890	NM_001042771.2	ENST00000336890	NM_001042771.2	Yes	No	3	Yes	No	Yes	No	No	No	Yes	
LEF1	51176	ENST00000265165	NM_016269	ENST00000265165	NM_016269	Yes	No	3	Yes	No	No	No	Yes	No	Yes	TCF10, TCF1ALPHA, TCF7L3
LMO2	4005	ENST00000395833	NM_001142315.1	ENST00000395833	NM_001142315.1	Yes	No	3	Yes	No	No	No	Yes	No	Yes	RBTN2, RBTNL1, RHOM2, TTG2
LRP1B	53353	ENST00000389484	NM_018557	ENST00000389484	NM_018557	No	Yes	3	Yes	No	No	No	Yes	No	Yes	LRP-DIT, LRPDIT
LZTR1	8216	ENST00000215739	NM_006767.3	ENST00000646124	NM_006767.3	No	Yes	3	Yes	Yes	No	No	No	No	Yes	BTBD29, LZTR-1
MAFB	9935	ENST00000373313	NM_005461.4	ENST00000373313	NM_005461.4	Yes	No	3	Yes	No	No	No	Yes	No	Yes	KRML
MAPK3	5595	ENST00000263025	NM_002746.2	ENST00000263025	NM_002746.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	ERK1, PRKM3, p44erk1, p44mapk
MAPKAP1	79109	ENST00000265960	NM_001006617.1	ENST00000265960	NM_001006617.1	No	No	3	Yes	Yes	Yes	No	No	No	No	MGC2745, MIP1, SIN1
MDC1	9656	ENST00000376406	NM_014641.2	ENST00000376406	NM_014641.2	No	No	3	Yes	Yes	Yes	No	No	No	No	Em:AB023051.5, KIAA0170, NFBD1
MECOM	2122	ENST00000468789	NM_001105078.3	ENST00000468789	NM_001105078.3	Yes	No	3	Yes	No	No	No	Yes	No	Yes	EVI1, KMT8E, MDS1, MDS1-EVI1, PRDM3
MGA	23269	ENST00000219905	NM_001164273.1	ENST00000219905	NM_001164273.1	No	Yes	3	Yes	Yes	Yes	No	No	No	No	FLJ12634, KIAA0518, MAD5, MXD5
MLLT10	8028	ENST00000307729	NM_001195626.1	ENST00000307729	NM_001195626.1	Yes	No	3	Yes	No	No	No	Yes	No	Yes	AF10
MLLT3	4300	ENST00000380338	NM_004529	ENST00000380338	NM_004529	Yes	No	3	Yes	No	No	No	Yes	No	Yes	AF-9, AF9, YEATS3
MN1	4330	ENST00000302326	NM_002430	ENST00000302326	NM_002430	Yes	No	3	Yes	No	No	No	Yes	No	Yes	MGCR, MGCR1, MGCR1-PEN
MSI1	4440	ENST00000257552	NM_002442.3	ENST00000257552	NM_002442.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	
MST1	4485	ENST00000449682	NM_020998.3	ENST00000449682	NM_020998.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	D3F15S2, DNF15S2, HGFL, NF15S2
MTAP	4507	ENST00000380172	NM_002451.3	ENST00000644715	NM_002451.3	No	Yes	3	Yes	Yes	No	Yes	No	No	No	MSAP, c86fus
MYH11	4629	ENST00000300036	NM_002474	ENST00000300036	NM_002474	No	Yes	3	Yes	No	No	No	Yes	No	Yes	SMHC, SMMHC
NCOA3	8202	ENST00000371998	NM_181659.2	ENST00000371998	NM_181659.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	ACTR, AIB1, CAGH16, KAT13B, SRC-3, SRC3, TNRC16, TRAM-1, bHLHe42, p/CIP
NCSTN	23385	ENST00000294785	NM_015331.2	ENST00000294785	NM_015331.2	Yes	No	3	Yes	No	Yes	No	Yes	No	No	APH2, KIAA0253
NEGR1	257194	ENST00000357731	NM_173808.2	ENST00000357731	NM_173808.2	No	No	3	Yes	Yes	Yes	No	No	No	No	IGLON4, KILON, MGC46680, Ntra
NKX3-1	4824	ENST00000380871	NM_006167.3	ENST00000380871	NM_006167.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	BAPX2, NKX3.1, NKX3A
NOTCH4	4855	ENST00000375023	NM_004557.3	ENST00000375023	NM_004557.3	Yes	Yes	3	Yes	Yes	Yes	No	No	No	No	INT3
NR4A3	8013	ENST00000395097	NM_006981.3	ENST00000395097	NM_006981.3	Yes	No	3	Yes	No	No	No	Yes	No	Yes	CSMF, MINOR
NTHL1	4913	ENST00000219066	NM_002528.5	ENST00000219066	NM_002528.5	No	Yes	3	Yes	Yes	Yes	No	No	No	No	NTH1, OCTS3
NUF2	83540	ENST00000271452	NM_031423.3	ENST00000271452	NM_031423.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	CDCA1, CT106, NUF2R
NUP214	8021	ENST00000359428	NM_005085	ENST00000359428	NM_005085	Yes	No	3	Yes	No	No	No	Yes	No	Yes	CAIN, CAN, D9S46E, N214
NUP98	4928	ENST00000359171	XM_005252950.1	ENST00000355260	NM_139132.4	Yes	No	3	Yes	No	No	No	Yes	No	Yes	NUP96, Nup98-96, Nup98-Nup96
NUTM1	256646	ENST00000333756	XM_011521429.1	ENST00000333756	XM_011521429.1	No	No	3	Yes	No	No	Yes	No	No	Yes	C15orf55, DKFZp434O192, FAM22H, NUT
PAK1	5058	ENST00000356341	NM_002576.4	ENST00000356341	NM_002576.4	Yes	No	3	Yes	Yes	Yes	No	No	No	No	
PAK5	57144	ENST00000353224	NM_177990.2	ENST00000353224	NM_177990.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	KIAA1264, PAK7
PAX3	5077	ENST00000350526	NM_181457	ENST00000350526	NM_181457	Yes	No	3	Yes	No	No	No	Yes	No	Yes	HUP2, WS1
PAX7	5081	ENST00000420770	NM_001135254	ENST00000420770	NM_001135254	Yes	No	3	Yes	No	No	No	Yes	No	Yes	Hup1
PCBP1	5093	ENST00000303577	NM_006196.3	ENST00000303577	NM_006196.3	No	No	3	Yes	No	Yes	No	Yes	No	No	HNRPE1, HNRPX, hnRNP-E1, hnRNP-X
PDGFB	5155	ENST00000331163	NM_002608.2	ENST00000331163	NM_002608.2	Yes	No	3	Yes	No	No	No	Yes	No	Yes	SIS, SSV
PDK1	5163	ENST00000282077	NM_002610	ENST00000282077	NM_002610	Yes	No	3	Yes	No	No	Yes	Yes	No	No	
PDPK1	5170	ENST00000342085	NM_002613.4	ENST00000342085	NM_002613.4	No	No	3	Yes	Yes	Yes	No	No	No	No	
PGR	5241	ENST00000325455	NM_000926.4	ENST00000325455	NM_000926.4	Yes	No	3	Yes	Yes	Yes	No	No	No	No	NR3C3, PR
PIK3C3	5289	ENST00000262039	NM_002647.2	ENST00000262039	NM_002647.2	No	No	3	Yes	Yes	Yes	No	No	No	No	Vps34
PIK3CD	5293	ENST00000377346	NM_005026.3	ENST00000377346	NM_005026.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	p110D
PIK3R3	8503	ENST00000262741	NM_003629.3	ENST00000262741	NM_003629.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	
PLCG1	5335	ENST00000373271	NM_182811.1	ENST00000373271	NM_182811.1	Yes	No	3	Yes	No	Yes	No	No	No	Yes	NCKAP3, PLC-II, PLC1, PLC148, PLCgamma1
PLK2	10769	ENST00000274289	NM_006622.3	ENST00000274289	NM_006622.3	No	No	3	Yes	Yes	Yes	No	No	No	No	SNK
PMAIP1	5366	ENST00000316660	NM_021127.2	ENST00000316660	NM_021127.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	NOXA
PML	5371	ENST00000268058	NM_033238	ENST00000268058	NM_033238	No	Yes	3	Yes	No	No	No	Yes	No	Yes	MYL, RNF71, TRIM19
PMS1	5378	ENST00000441310	NM_000534.4	ENST00000441310	NM_000534.4	No	Yes	3	Yes	Yes	Yes	No	No	No	No	MLH2, PMSL1
PNRC1	10957	ENST00000336032	NM_006813.2	ENST00000336032	NM_006813.2	No	No	3	Yes	Yes	Yes	No	No	No	No	B4-2, PROL2, PRR2
PPP4R2	151987	ENST00000356692	NM_174907.2	ENST00000356692	NM_174907.2	No	No	3	Yes	Yes	Yes	No	No	No	No	
PRDM14	63978	ENST00000276594	NM_024504.3	ENST00000276594	NM_024504.3	No	No	3	Yes	Yes	Yes	No	No	No	No	
PRKD1	5587	ENST00000331968	NM_002742.2	ENST00000331968	NM_002742.2	No	No	3	Yes	Yes	Yes	No	No	No	No	PKC-mu, PKCM, PKD, PRKCM
PTP4A1	7803	ENST00000370651	NM_003463.4	ENST00000626021	NM_003463.4	No	No	3	Yes	Yes	Yes	No	No	No	No	PRL-1, PTPCAAX1
PTPN2	5771	ENST00000309660	NM_002828.3	ENST00000309660	NM_002828.3	No	Yes	3	Yes	No	Yes	No	Yes	No	No	PTPT, TC-PTP, TCELLPTP, TCPTP
PTPRD	5789	ENST00000356435	NM_002839.3	ENST00000356435	NM_002839.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	HPTP, PTPD
PTPRS	5802	ENST00000357368	NM_002850.3	ENST00000587303	NM_002850.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	
QKI	9444	ENST00000361752	NM_006775	ENST00000361752	NM_006775	No	Yes	3	Yes	No	No	Yes	No	No	Yes	QK3
RAB35	11021	ENST00000229340	NM_006861.6	ENST00000229340	NM_006861.6	Yes	No	3	Yes	Yes	Yes	No	No	No	No	H-ray
RAC2	5880	ENST00000249071	NM_002872.4	ENST00000249071	NM_002872.4	Yes	No	3	Yes	Yes	Yes	No	No	No	No	EN-7
RASA1	5921	ENST00000274376	NM_002890.2	ENST00000274376	NM_002890.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	CM-AVM, GAP, RASA, p120GAP, p120RASGAP
RBM15	64783	ENST00000369784	NM_022768.4	ENST00000369784	NM_022768.4	Yes	Yes	3	Yes	No	No	No	Yes	No	Yes	OTT, OTT1
RECQL	5965	ENST00000421138	NM_002907.3	ENST00000421138	NM_002907.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	RecQ1, RecQL1
RHEB	6009	ENST00000262187	NM_005614.3	ENST00000262187	NM_005614.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	RHEB2
RIT1	6016	ENST00000368323	NM_006912.5	ENST00000368323	NM_006912.5	Yes	No	3	Yes	Yes	Yes	No	No	No	No	MGC125864, MGC125865, RIBB, RIT, ROC1
RPS6KA4	8986	ENST00000334205	NM_003942.2	ENST00000334205	NM_003942.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	MSK2, RSK-B
RPS6KB2	6199	ENST00000312629	NM_003952.2	ENST00000312629	NM_003952.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	KLS, P70-BETA, S6KB, S6Kbeta, S6Kβ, STK14B, p70S6Kb
RRAGC	64121	ENST00000373001	NM_022157.3	ENST00000373001	NM_022157.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	FLJ13311, GTR2
RRAS	6237	ENST00000246792	NM_006270.3	ENST00000246792	NM_006270.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	R-Ras
RTEL1	51750	ENST00000360203	NM_001283009.1	ENST00000360203	NM_001283009.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	C20orf41, DKFZP434C013, KIAA1088, NHL, RTEL, bK3184A7.3
RXRA	6256	ENST00000481739	NM_002957.4	ENST00000481739	NM_002957.4	No	No	3	Yes	Yes	Yes	No	No	No	No	NR2B1
RYBP	23429	ENST00000477973	NM_012234.5	ENST00000477973	NM_012234.5	No	Yes	3	Yes	Yes	Yes	No	No	No	No	AAP1, DEDAF, YEAF1
SESN1	27244	ENST00000436639	NM_014454.2	ENST00000436639	NM_014454.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	PA26, SEST1
SESN2	83667	ENST00000253063	NM_031459.4	ENST00000253063	NM_031459.4	No	Yes	3	Yes	Yes	Yes	No	No	No	No	DKFZp761M0212, HI95, SEST2
SESN3	143686	ENST00000536441	NM_144665.3	ENST00000536441	NM_144665.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	MGC29667, SEST3
SET	6418	ENST00000372692	NM_001122821	ENST00000372692	NM_001122821	Yes	No	3	Yes	No	No	No	Yes	No	Yes	2PP2A, IGAAD, IPP2A2, PHAPII, TAF-I, TAF-IBETA
SETDB1	9869	ENST00000271640	NM_001145415.1	ENST00000271640	NM_001145415.1	Yes	Yes	3	Yes	Yes	Yes	No	No	No	No	ESET, KG1T, KIAA0067, KMT1E, TDRD21
SH2D1A	4068	ENST00000371139	NM_002351.4	ENST00000371139	NM_002351.4	No	Yes	3	Yes	Yes	Yes	No	No	No	No	DSHP, EBVS, IMD5, LYP, SAP, XLP, XLPD
SHOC2	8036	ENST00000369452	NM_007373.3	ENST00000369452	NM_007373.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	KIAA0862, SOC-2, SOC2, SUR-8, SUR8
SHQ1	55164	ENST00000325599	NM_018130.2	ENST00000325599	NM_018130.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	FLJ10539, Shq1p
SLX4	84464	ENST00000294008	NM_032444.2	ENST00000294008	NM_032444.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	BTBD12, FANCP, KIAA1784, KIAA1987
SMARCD1	6602	ENST00000394963	NM_003076.4	ENST00000394963	NM_003076.4	No	No	3	Yes	Yes	Yes	No	No	No	No	BAF60A, CRACD1, Rsc6p
SMARCE1	6605	ENST00000348513	NM_003079.4	ENST00000348513	NM_003079.4	Yes	Yes	3	Yes	Yes	No	No	No	No	Yes	BAF57
SMC1A	8243	ENST00000322213	NM_006306.3	ENST00000322213	NM_006306.3	No	Yes	3	Yes	No	Yes	No	Yes	No	No	DXS423E, KIAA0178, SB1.8, SMC1L1, Smcb
SMC3	9126	ENST00000361804	NM_005445.3	ENST00000361804	NM_005445.3	No	Yes	3	Yes	No	Yes	No	Yes	No	No	BAM, CSPG6, HCAP, SMC3L1, bamacan
SMYD3	64754	ENST00000388985	NM_001167740.1	ENST00000490107	NM_001167740.1	Yes	No	3	Yes	Yes	Yes	No	No	No	No	KMT3E, ZMYND1, ZNFN3A1
SOS1	6654	ENST00000402219	NM_005633.3	ENST00000402219	NM_005633.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	GINGF
SOX17	64321	ENST00000297316	NM_022454.3	ENST00000297316	NM_022454.3	No	Yes	3	Yes	Yes	Yes	No	No	No	No	
SPRED1	161742	ENST00000299084	NM_152594.2	ENST00000299084	NM_152594.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	FLJ33903, PPP1R147
SS18	6760	ENST00000415083	NM_001007559.2	ENST00000415083	NM_001007559.2	Yes	No	3	Yes	No	No	No	Yes	No	Yes	SSXT
STK19	8859	ENST00000375331	NM_004197.1	ENST00000375331	NM_004197.1	Yes	No	3	Yes	Yes	Yes	No	No	No	No	D6S60, G11
STK40	83931	ENST00000373129	NM_032017.1	ENST00000373129	NM_032017.1	No	No	3	Yes	Yes	Yes	No	No	No	No	MGC4796, SgK495
TAL1	6886	ENST00000294339	NM_001287347.2	ENST00000294339	NM_001287347.2	Yes	No	3	Yes	No	No	No	Yes	No	Yes	TCL5, bHLHa17
TAP1	6890	ENST00000354258	NM_000593.5	ENST00000354258	NM_000593.5	No	No	3	Yes	Yes	Yes	No	No	No	No	ABCB2, D6S114E, RING4
TAP2	6891	ENST00000374899	NM_018833.2	ENST00000383119	NM_018833.2	No	No	3	Yes	Yes	Yes	No	No	No	No	ABCB3, D6S217E, RING11
TCL1A	8115	ENST00000402399	NM_001098725.1	ENST00000402399	NM_001098725.1	Yes	No	3	Yes	No	No	No	Yes	No	Yes	TCL1
TFE3	7030	ENST00000315869	NM_006521.5	ENST00000315869	NM_006521.5	Yes	No	3	Yes	No	No	No	Yes	No	Yes	TFEA, bHLHe33
TGFBR1	7046	ENST00000374994	NM_004612.2	ENST00000374994	NM_004612.2	No	Yes	3	Yes	Yes	Yes	No	No	No	No	ALK-5, ALK5, ESS1, MSSE, TBR-i, TBRI
TLX1	3195	ENST00000370196	NM_005521.3	ENST00000370196	NM_005521.3	Yes	No	3	Yes	No	No	No	Yes	No	Yes	HOX11, TCL3
TLX3	30012	ENST00000296921	NM_021025.2	ENST00000296921	NM_021025.2	Yes	No	3	Yes	No	No	No	Yes	No	Yes	HOX11L2, RNX
TNFRSF17	608	ENST00000053243	NM_001192	ENST00000053243	NM_001192	Yes	No	3	Yes	No	No	No	Yes	No	Yes	BCM, BCMA, CD269, TNFRSF13A
TP53BP1	7158	ENST00000382044	NM_001141980.1	ENST00000382044	NM_001141980.1	No	Yes	3	Yes	Yes	Yes	No	No	No	No	53BP1, TDRD30, p202
TRAF3	7187	ENST00000392745	NM_003300.3	ENST00000392745	NM_003300.3	No	Yes	3	Yes	No	Yes	No	Yes	No	No	CAP-1, CD40bp, CRAF1, LAP1, RNF118
TRAF5	7188	ENST00000261464	NM_001033910.2	ENST00000261464	NM_001033910.2	No	Yes	3	Yes	No	Yes	No	Yes	No	No	RNF84
TYK2	7297	ENST00000264818	NM_003331.4	ENST00000264818	NM_003331.4	Yes	No	3	Yes	No	Yes	No	Yes	No	No	JTK1
U2AF2	11338	ENST00000308924	NM_007279.2	ENST00000308924	NM_007279.2	No	No	3	Yes	No	Yes	No	Yes	No	No	U2AF65
UBR5	51366	ENST00000520539	NM_015902.5	ENST00000520539	NM_015902.5	Yes	No	3	Yes	No	Yes	No	No	No	Yes	DD5, EDD, EDD1, HYD, KIAA0896
UPF1	5976	ENST00000262803	NM_002911.3	ENST00000262803	NM_002911.3	No	No	3	Yes	Yes	Yes	No	No	No	No	HUPF1, KIAA0221, NORF1, RENT1, pNORF1, smg-2
USP6	9098	ENST00000250066	NM_004505	ENST00000250066	NM_004505	Yes	No	3	Yes	No	No	No	Yes	No	Yes	HRP1, TRE17, TRESMCR, Tre-2, Tre2
USP8	9101	ENST00000307179	NM_001128610.2	ENST00000307179	NM_001128610.2	Yes	No	3	Yes	Yes	No	No	No	No	Yes	HumORF8, KIAA0055, SPG59, UBPY
VTCN1	79679	ENST00000369458	NM_024626.3	ENST00000369458	NM_024626.3	No	No	3	Yes	Yes	Yes	No	No	No	No	B7-H4, B7H4, B7S1, B7x, FLJ22418
XBP1	7494	ENST00000216037	NM_005080.3	ENST00000216037	NM_005080.3	Yes	No	3	Yes	No	Yes	No	Yes	No	No	XBP2
XIAP	331	ENST00000355640	NM_001167.3	ENST00000355640	NM_001167.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	API3, BIRC4, ILP-1, hILP
YAP1	10413	ENST00000282441	NM_001130145.2	ENST00000282441	NM_001130145.2	Yes	No	3	Yes	Yes	Yes	No	No	No	No	YAP65
YES1	7525	ENST00000314574	NM_005433.3	ENST00000314574	NM_005433.3	Yes	No	3	Yes	Yes	Yes	No	No	No	No	HsT441, Yes, c-yes
ZNF217	7764	ENST00000302342	NM_006526	ENST00000302342	NM_006526	Yes	No	3	Yes	No	No	Yes	Yes	No	No	ZABC1
ABI1	10006					No	No	2	No	No	No	No	Yes	No	Yes	ABI-1, E3B1, SSH3BP1
ACKR3	57007	ENST00000272928	NM_020311	ENST00000272928	NM_020311	Yes	Yes	2	Yes	No	No	No	No	No	Yes	CMKOR1, CXCR7, GPR159, RDC1
ACTG1	71	ENST00000331925	NM_001199954.1	ENST00000573283	NM_001199954.1	No	Yes	2	Yes	No	Yes	No	No	No	No	ACTG, DFNA20, DFNA26
ACVR2A	92	ENST00000241416	NM_001278579	ENST00000241416	NM_001278579	Yes	Yes	2	Yes	No	No	No	No	No	Yes	ACTRII, ACVR2
ADGRA2	25960	ENST00000412232	NM_032777	ENST00000412232	NM_032777	Yes	No	2	Yes	No	No	No	Yes	No	No	DKFZp434C211, DKFZp434J0911, FLJ14390, GPR124, KIAA1531, TEM5
AFDN	4301					No	No	2	No	No	No	No	Yes	No	Yes	AF-6, AF6, MLLT4
AFF1	4299					No	No	2	No	No	No	No	Yes	No	Yes	AF-4, AF4, MLLT2, PBM1
AGO1	26523	ENST00000373204	NM_012199.2	ENST00000373204	NM_012199.2	Yes	No	2	Yes	Yes	No	No	No	No	No	EIF2C1, hAGO1
ALB	213	ENST00000295897	NM_000477.5	ENST00000295897	NM_000477.5	No	No	2	Yes	Yes	No	No	No	No	No	
APLNR	187	ENST00000257254	NM_005161.4	ENST00000257254	NM_005161.4	Yes	Yes	2	Yes	Yes	No	No	No	No	No	AGTRL1, APJ, APJR, FLJ90771
ARFRP1	10139					No	No	2	No	No	No	Yes	Yes	No	No	ARL18, ARP, Arp1
ARHGEF28	64283	ENST00000426542	NM_001177693.1	ENST00000426542	NM_001177693.1	Yes	No	2	Yes	No	Yes	No	No	No	No	RGNEF, RIP2, p190RhoGEF
ARID3A	1820	ENST00000263620	NM_005224.2	ENST00000263620	NM_005224.2	No	Yes	2	Yes	No	Yes	No	No	No	No	BRIGHT, DRIL1
ARID3B	10620	ENST00000346246	NM_001307939.1	ENST00000346246	NM_001307939.1	Yes	No	2	Yes	No	Yes	No	No	No	No	BDP, DRIL2
ARID3C	138715	ENST00000378909	NM_001017363.1	ENST00000378909	NM_001017363.1	No	No	2	Yes	No	Yes	No	No	No	No	
ARID4A	5926	ENST00000355431	NM_002892.3	ENST00000355431	NM_002892.3	No	Yes	2	Yes	No	Yes	No	No	No	No	RBBP1, RBP-1
ARID4B	51742	ENST00000264183	NM_001206794.1	ENST00000264183	NM_001206794.1	No	Yes	2	Yes	No	Yes	No	No	No	No	BCAA, BRCAA1, RBP1L1, SAP180
ARID5A	10865	ENST00000357485	NM_212481.1	ENST00000357485	NM_212481.1	No	No	2	Yes	No	Yes	No	No	No	No	MRF-1, RP11-363D14
ARNT	405					No	No	2	No	No	No	No	Yes	No	Yes	HIF-1beta, bHLHe2
ATP1A1	476	ENST00000295598	NM_000701	ENST00000295598	NM_000701	Yes	Yes	2	Yes	No	No	No	No	No	Yes	
ATP6AP1	537	ENST00000369762	NM_001183.5	ENST00000369762	NM_001183.5	No	No	2	Yes	No	Yes	No	No	No	No	16A, ATP6IP1, ATP6S1, Ac45, CF2, ORF, VATPS1, XAP-3, XAP3
ATP6V1B2	526	ENST00000276390	NM_001693.3	ENST00000276390	NM_001693.3	No	Yes	2	Yes	No	Yes	No	No	No	No	ATP6B2, HO57
ATXN2	6311	ENST00000377617	NM_002973.3	ENST00000550104	NM_002973.3	No	Yes	2	Yes	No	Yes	No	No	No	No	ATX2, SCA2, TNRC13
ATXN7	6314	ENST00000295900	NM_000333.3	ENST00000295900	NM_000333.3	Yes	No	2	Yes	Yes	No	No	No	No	No	ADCAII, OPCA3, SCA7, SGF73
BACH2	60468	ENST00000257749	NM_001170794.1	ENST00000257749	NM_001170794.1	No	Yes	2	Yes	No	Yes	No	No	No	No	BTBD25
BCL11A	53335					No	No	2	No	No	No	No	Yes	No	Yes	BCL11A-L, BCL11A-S, BCL11A-XL, CTIP1, EVI9, HBFQTL5, ZNF856
BRD3	8019	ENST00000303407	NM_007371	ENST00000303407	NM_007371	Yes	No	2	Yes	No	No	No	No	No	Yes	KIAA0043, ORFX, RING3L
BRSK1	84446	ENST00000309383	NM_032430	ENST00000309383	NM_032430	No	Yes	2	Yes	No	No	No	Yes	No	No	KIAA1811
CACNA1D	776	ENST00000350061	NM_001128840	ENST00000350061	NM_001128840	Yes	No	2	Yes	No	No	No	No	No	Yes	CACH3, CACN4, CACNL1A2, CCHL1A2, Cav1.3
CAD	790	ENST00000264705	NM_001306079	ENST00000264705	NM_001306079	Yes	No	2	Yes	No	No	No	Yes	No	No	GATD4
CAMTA1	23261					No	No	2	No	No	No	No	Yes	No	Yes	KIAA0833
CANT1	124583	ENST00000302345	NM_001159772	ENST00000302345	NM_001159772	Yes	No	2	Yes	No	No	No	No	No	Yes	SCAN-1, SHAPY
CARS1	833					No	No	2	No	No	No	No	Yes	No	Yes	CARS
CD28	940	ENST00000324106	NM_006139.3	ENST00000324106	NM_006139.3	Yes	No	2	Yes	No	Yes	No	No	No	No	
CDH11	1009	ENST00000268603	NM_001797	ENST00000268603	NM_001797	Yes	No	2	Yes	No	No	No	No	No	Yes	CAD11
CDX2	1045					No	No	2	No	No	No	No	Yes	No	Yes	CDX3
CEP43	11116					No	No	2	No	No	No	No	Yes	No	Yes	FGFR1OP, FOP
CHD2	1106	ENST00000394196	NM_001271	ENST00000394196	NM_001271	No	Yes	2	Yes	No	No	No	Yes	No	No	DKFZp547I1315, DKFZp686E01200, DKFZp781D1727, FLJ38614
CHD4	1108	ENST00000357008	NM_001273	ENST00000544040	NM_001273	Yes	No	2	Yes	No	No	No	No	No	Yes	Mi-2b, Mi2-BETA
CLTC	1213					No	No	2	No	No	No	No	Yes	No	Yes	CLTCL2, Hc
CMTR2	55783	ENST00000338099	NM_001099642.1	ENST00000338099	NM_001099642.1	No	Yes	2	Yes	Yes	No	No	No	No	No	AFT, FLJ11171, FTSJD1, MTr2
COL2A1	1280	ENST00000380518	NM_001844	ENST00000380518	NM_001844	No	Yes	2	Yes	No	No	No	No	No	Yes	AOM, SEDC, STL1
CRBN	51185	ENST00000231948	NM_016302.3	ENST00000231948	NM_016302.3	No	Yes	2	Yes	No	Yes	No	No	No	No	MRT2, MRT2A
CREB1	1385	ENST00000432329	NM_134442.3	ENST00000432329	NM_134442.3	Yes	No	2	Yes	No	No	No	No	No	Yes	
CREB3L1	90993					No	No	2	No	No	No	No	Yes	No	Yes	OASIS
CREB3L2	64764					No	No	2	No	No	No	No	Yes	No	Yes	BBF2H7, TCAG_1951439
CTR9	9646	ENST00000361367	NM_014633.4	ENST00000361367	NM_014633.4	No	Yes	2	Yes	Yes	No	No	No	No	No	KIAA0155, SH2BP1, p150TSP
CUL4A	8451	ENST00000375440	NM_001008895	ENST00000375440	NM_001008895	Yes	No	2	Yes	No	No	Yes	No	No	No	
CYP19A1	1588	ENST00000260433	NM_000103.3	ENST00000396402	NM_000103.4	Yes	No	2	Yes	Yes	No	No	No	No	No	ARO, ARO1, CPV1, CYAR, CYP19, P-450AROM, aromatase
DDB2	1643	ENST00000256996	NM_000107	ENST00000256996	NM_000107	No	Yes	2	Yes	No	No	No	No	No	Yes	DDBB, FLJ34321, UV-DDB2, XPE
DDX10	1662					No	No	2	No	No	No	No	Yes	No	Yes	Dbp4, HRH-J8
DDX5	1655	ENST00000225792	NM_004396	ENST00000225792	NM_004396	Yes	No	2	Yes	No	No	No	No	No	Yes	G17P1, HLR1, p68
DDX6	1656					No	No	2	No	No	No	No	Yes	No	Yes	HLR2, Rck/p54
ECT2L	345930	ENST00000367682	NM_001077706.2	ENST00000367682	NM_001077706.2	No	Yes	2	Yes	No	No	No	Yes	No	No	ARHGEF32, C6orf91, FBXO49, LFDH
EGR1	1958	ENST00000239938	NM_001964.2	ENST00000239938	NM_001964.2	No	Yes	2	Yes	No	Yes	No	No	No	No	AT225, G0S30, KROX-24, NGFI-A, TIS8, ZIF-268
EIF3E	3646	ENST00000220849	NM_001568	ENST00000220849	NM_001568	No	No	2	Yes	No	No	No	No	No	Yes	EIF3S6, INT6, eIF3-p48
ELK4	2005	ENST00000357992	NM_001973	ENST00000357992	NM_001973	Yes	No	2	Yes	No	No	No	No	No	Yes	
ELN	2006	ENST00000252034	NM_001278915	ENST00000252034	NM_000501	Yes	No	2	Yes	No	No	No	Yes	No	No	SVAS, WBS, WS
EML4	27436					No	No	2	No	No	No	No	Yes	No	Yes	C2orf2, ELP120, ROPP120
EP400	57634	ENST00000389561	NM_015409.3	ENST00000389561	NM_015409.3	No	Yes	2	Yes	No	Yes	No	No	No	No	CAGH32, DKFZP434I225, KIAA1498, KIAA1818, P400, TNRC12
EPHB4	2050	ENST00000358173	NM_004444	ENST00000358173	NM_004444	Yes	No	2	Yes	No	No	Yes	No	No	No	HTK, Tyro11
EPOR	2057	ENST00000222139	NM_000121.3	ENST00000222139	NM_000121.3	Yes	No	2	Yes	No	No	No	Yes	No	No	
EPS15	2060					No	No	2	No	No	No	No	Yes	No	Yes	AF-1P, MLLT5
ERC1	23085	ENST00000360905	NM_178040	ENST00000360905	NM_178040	Yes	No	2	Yes	No	No	No	No	No	Yes	CAST2, ELKS, KIAA1081, MGC12974, RAB6IP2
ESCO2	157570	ENST00000305188	NM_001017420.2	ENST00000305188	NM_001017420.2	No	Yes	2	Yes	No	Yes	No	No	No	No	EFO2, RBS
ETAA1	54465	ENST00000272342	NM_019002.3	ENST00000272342	NM_019002.3	No	Yes	2	Yes	Yes	No	No	No	No	No	ETAA16
ETS1	2113	ENST00000319397	NM_005238	ENST00000319397	NM_005238	Yes	Yes	2	Yes	No	No	No	Yes	No	No	ETS-1, EWSR2, FLJ10768
EXT1	2131	ENST00000378204	NM_000127	ENST00000378204	NM_000127	No	Yes	2	Yes	No	No	No	No	No	Yes	LGCR, LGS, ttv
EZHIP	340602	ENST00000342995	NM_203407.2	ENST00000342995	NM_203407.3	Yes	No	2	Yes	Yes	No	No	No	No	No	CATACOMB, CXorf67
EZR	7430					No	No	2	No	No	No	Yes	No	No	Yes	VIL2
FCGR2B	2213					No	No	2	No	No	No	No	Yes	No	Yes	CD32, CD32B, FCG2, FCGR2
FCRL4	83417					No	No	2	No	No	No	No	Yes	No	Yes	CD307d, FCRH4, IGFP2, IRTA1
FES	2242	ENST00000328850	NM_002005	ENST00000328850	NM_002005	Yes	No	2	Yes	No	No	No	No	No	Yes	FPS
FOXF1	2294	ENST00000262426	NM_001451.2	ENST00000262426	NM_001451.2	Yes	Yes	2	Yes	Yes	No	No	No	No	No	FKHL5, FREAC1
FOXO4	4303					No	No	2	No	No	No	No	Yes	No	Yes	AFX1, MLLT7
FRS2	10818	ENST00000397997	NM_001042555	ENST00000397997	NM_001042555	Yes	No	2	Yes	No	No	No	Yes	No	No	FRS2A, FRS2alpha, SNT-1
FSTL3	10272					No	No	2	No	No	No	No	Yes	No	Yes	FLRG, FSRP
FURIN	5045	ENST00000268171	NM_001289823.1	ENST00000268171	NM_001289823.1	Yes	No	2	Yes	No	Yes	No	No	No	No	FUR, PACE, PCSK3
GAB1	2549	ENST00000262994	NM_002039.3	ENST00000262994	NM_002039.3	Yes	No	2	Yes	Yes	No	No	No	No	No	DFNB26
GAB2	9846	ENST00000361507	NM_080491.2	ENST00000361507	NM_080491.2	Yes	No	2	Yes	Yes	No	No	No	No	No	KIAA0571
GABRA6	2559	ENST00000274545	NM_000811	ENST00000274545	NM_000811	Yes	No	2	Yes	No	No	Yes	No	No	No	
GAS7	8522					No	No	2	No	No	No	No	Yes	No	Yes	KIAA0394, MGC1348
GATA4	2626	ENST00000335135	NM_002052	ENST00000335135	NM_002052	No	Yes	2	Yes	No	No	Yes	No	No	No	
GATA6	2627	ENST00000269216	NM_005257	ENST00000269216	NM_005257	Yes	No	2	Yes	No	No	Yes	No	No	No	
GID4	79018					No	No	2	No	No	No	Yes	Yes	No	No	C17orf39, VID24
GPC3	2719	ENST00000370818	NM_004484	ENST00000370818	NM_004484	Yes	No	2	Yes	No	No	No	No	No	Yes	DGSX, OCI-5, SDYS, SGB, SGBS, SGBS1
GPHN	10243					No	No	2	No	No	No	No	Yes	No	Yes	KIAA1385
GRM3	2913	ENST00000361669	NM_000840	ENST00000361669	NM_000840	No	No	2	Yes	No	No	Yes	No	No	No	GPRC1C, MGLUR3, mGlu3
GTF2I	2969	ENST00000324896	NM_032999.3	ENST00000573035	NM_032999.3	Yes	No	2	Yes	No	Yes	No	No	No	No	BAP-135, BTKAP1, DIWS, IB291, TFII-I, WBSCR6
H1-5	3009	ENST00000331442	NM_005322.2	ENST00000331442	NM_005322.2	No	Yes	2	Yes	No	Yes	No	No	No	No	H1F5, H1b, H1s-3, HIST1H1B
H2BC8	8339	ENST00000244601	NM_003518	ENST00000541790	NM_003518.3	No	No	2	Yes	No	Yes	No	No	No	No	H2B.1A, H2B/a, H2BFA, HIST1H2BG
H4C9	8294					No	No	2	No	No	No	No	Yes	No	Yes	H4/m, H4FM, HIST1H4I
HERPUD1	9709					No	No	2	No	No	No	No	Yes	No	Yes	HERP, KIAA0025, Mif1, SUP
HEY1	23462					No	No	2	No	No	No	No	Yes	No	Yes	CHF-2, CHF2, HERP2, HESR-1, HESR1, HRT-1, bHLHb31
HIP1	3092					No	No	2	No	No	No	No	Yes	No	Yes	
HIRA	7290	ENST00000263208	NM_003325	ENST00000263208	NM_003325	No	Yes	2	Yes	No	Yes	No	No	No	No	DGCR1, TUP1, TUPLE1
HLA-C	3107	ENST00000376228	NM_002117.5	ENST00000376228	NM_002117.5	No	Yes	2	Yes	Yes	No	No	No	No	No	D6S204, HLA-JY3, PSORS1
HLF	3131					No	No	2	No	No	No	No	Yes	No	Yes	MGC33822
HOXA13	3209					No	No	2	No	No	No	No	Yes	No	Yes	HOX1J
HOXA9	3205					No	No	2	No	No	No	No	Yes	No	Yes	HOX1G
HOXC11	3227					No	No	2	No	No	No	No	Yes	No	Yes	HOX3H
HOXC13	3229					No	No	2	No	No	No	No	Yes	No	Yes	HOX3, HOX3G
HOXD11	3237					No	No	2	No	No	No	No	Yes	No	Yes	HOX4F
HOXD13	3239					No	No	2	No	No	No	No	Yes	No	Yes	HOX4I, SPD
HSD3B1	3283	ENST00000369413	NM_000862	ENST00000369413	NM_000862	Yes	No	2	Yes	No	No	Yes	No	No	No	HSD3B, HSDB3, SDR11E1
HSP90AB1	3326					No	No	2	No	No	No	No	Yes	No	Yes	HSPC2, HSPCB
IGH	3492					No	No	2	No	No	No	No	Yes	No	Yes	IGH@, IGHDY1
IGK	50802					No	No	2	No	No	No	No	Yes	No	Yes	IGK@
IGL	3535					No	No	2	No	No	No	No	Yes	No	Yes	IGL@
IL21R	50615					No	No	2	No	No	No	No	Yes	No	Yes	CD360
IL3	3562	ENST00000296870	NM_000588.3	ENST00000296870	NM_000588.3	Yes	No	2	Yes	No	No	No	Yes	No	No	IL-3, MCGF, MGC79398, MGC79399, MULTI-CSF
IL6ST	3572	ENST00000336909	NM_002184.3	ENST00000336909	NM_002184.3	Yes	No	2	Yes	No	No	No	No	No	Yes	CD130, GP130, IL-6RB, sGP130
IRF2	3660	ENST00000393593	NM_002199	ENST00000393593	NM_002199	No	Yes	2	Yes	No	No	Yes	No	No	No	
ITK	3702					No	No	2	No	No	No	No	Yes	No	Yes	EMT, LYK, PSCTK2
KBTBD4	55709	ENST00000395288	NM_016506.5	ENST00000395288	NM_016506.5	No	No	2	Yes	Yes	No	No	No	No	No	BKLHD4, FLJ10450, HSPC252
KDSR	2531					No	No	2	No	No	No	No	Yes	No	Yes	DHSR, FVT1, SDR35C1
KEL	3792	ENST00000355265	NM_000420	ENST00000355265	NM_000420	Yes	No	2	Yes	No	No	Yes	No	No	No	CD238, ECE3
KIF5B	3799					No	No	2	No	No	No	No	Yes	No	Yes	KNS, KNS1
KLF5	688	ENST00000377687	NM_001730.4	ENST00000377687	NM_001730.4	Yes	No	2	Yes	Yes	No	No	No	No	No	BTEB2, IKLF
KSR2	283455	ENST00000339824		ENST00000339824	NM_173598.6	Yes	No	2	Yes	No	Yes	No	No	No	No	FLJ25965
LASP1	3927					No	No	2	No	No	No	No	Yes	No	Yes	Lasp-1, MLN50
LMNA	4000	ENST00000368300	NM_170707	ENST00000368300	NM_170707	Yes	No	2	Yes	No	No	No	No	No	Yes	CMD1A, HGPS, LGMD1B, LMN1, LMNL1, PRO1
LPP	4026					No	No	2	No	No	No	No	Yes	No	Yes	
LTB	4050	ENST00000376117	NM_002341.1	ENST00000376117	NM_002341.1	Yes	Yes	2	Yes	No	Yes	No	No	No	No	TNFC, TNFSF3
LTK	4058	ENST00000263800	NM_002344	ENST00000263800	NM_002344	Yes	No	2	Yes	No	No	Yes	No	No	No	TYK1
LYL1	4066					No	No	2	No	No	No	No	Yes	No	Yes	bHLHa18
MAD2L2	10459	ENST00000235310	NM_001127325.1	ENST00000235310	NM_001127325.1	Yes	Yes	2	Yes	Yes	No	No	No	No	No	FANCV, MAD2B, POLZ2, REV7
MAP3K7	6885	ENST00000369329	NM_145331	ENST00000369329	NM_145331	Yes	No	2	Yes	No	No	No	Yes	No	No	MEKK7, TAK1
MEF2C	4208	ENST00000437473	NM_001193350	ENST00000437473	NM_001193350	Yes	Yes	2	Yes	No	No	No	Yes	No	No	
MERTK	10461	ENST00000295408	NM_006343.2	ENST00000295408	NM_006343.2	Yes	No	2	Yes	No	No	Yes	No	No	No	RP38, Tyro12, c-Eyk, mer
MGAM	8972	ENST00000549489	NM_004668.2	ENST00000549489	NM_004668.2	Yes	No	2	Yes	No	Yes	No	No	No	No	
MKI67	4288	ENST00000368654	NM_002417	ENST00000368654	NM_002417	Yes	No	2	Yes	No	No	No	Yes	No	No	MIB-1, PPP1R105
MLF1	4291					No	No	2	No	No	No	No	Yes	No	Yes	
MLLT6	4302					No	No	2	No	No	No	No	Yes	No	Yes	AF17, FLJ23480
MOB3B	79817	ENST00000262244	NM_024761.4	ENST00000262244	NM_024761.4	No	Yes	2	Yes	No	Yes	No	No	No	No	C9orf35, FLJ13204, MOB1D, MOBKL2B
MPEG1	219972	ENST00000361050	NM_001039396.1	ENST00000361050	NM_001039396.1	No	No	2	Yes	No	Yes	No	No	No	No	MPG1
MRTFA	57591					No	No	2	No	No	No	No	Yes	No	Yes	BSAC, KIAA1438, MKL, MKL1, MRTF-A
MSN	4478					No	No	2	No	No	No	No	Yes	No	Yes	
MUC1	4582					No	No	2	No	No	No	No	Yes	No	Yes	ADMCKD, ADMCKD1, CD227, MCD, MCKD, MCKD1, PEM, PUM
MYH9	4627					No	No	2	No	No	No	No	Yes	No	Yes	DFNA17, EPSTS, FTNS, MHA, NMHC-II-A, NMMHCA
MYO5A	4644	ENST00000399231	NM_000259	ENST00000399231	NM_000259	Yes	No	2	Yes	No	No	No	No	No	Yes	MYH12, MYO5, MYR12
NADK	65220	ENST00000341426	NM_001198993.1	ENST00000341426	NM_001198993.1	Yes	No	2	Yes	Yes	No	No	No	No	No	FLJ13052
NCOA2	10499					No	No	2	No	No	No	No	Yes	No	Yes	KAT13C, NCoA-2, TIF2, bHLHe75
NDRG1	10397					No	No	2	No	No	No	No	Yes	No	Yes	CAP43, NDR1, RTP, TDD5
NFE2	4778	ENST00000312156	NM_001136023.2	ENST00000312156	NM_001136023.2	Yes	No	2	Yes	No	Yes	No	No	No	No	NF-E2
NFKB2	4791					No	No	2	No	No	No	No	Yes	No	Yes	LYT-10, NF-kB2, p49/p100
NIN	51199					No	No	2	No	No	No	No	Yes	No	Yes	
NRG1	3084	ENST00000405005	NM_013964.3	ENST00000405005	NM_013964.3	Yes	No	2	Yes	No	No	No	No	No	Yes	GGF, HGL, NDF, NRG1-IT2
NUMA1	4926					No	No	2	No	No	No	No	Yes	No	Yes	
PAFAH1B2	5049					No	No	2	No	No	No	No	Yes	No	Yes	
PAX8	7849	ENST00000263334	NM_003466.3	ENST00000348715	NM_003466.3	Yes	No	2	Yes	No	No	No	No	No	Yes	
PBX1	5087					No	No	2	No	No	No	No	Yes	No	Yes	
PCM1	5108					No	No	2	No	No	No	No	Yes	No	Yes	PTC4
PDE4DIP	9659					No	No	2	No	No	No	No	Yes	No	Yes	CMYA2, KIAA0454, KIAA0477, MMGL
PDS5B	23047	ENST00000315596	NM_015032.3	ENST00000315596	NM_015032.3	No	Yes	2	Yes	No	Yes	No	No	No	No	APRIN, AS3, CG008, FLJ23236, KIAA0979
PER1	5187					No	No	2	No	No	No	No	Yes	No	Yes	PER, RIGUI
PGBD5	79605	ENST00000525115	NM_001258311.1	ENST00000525115	NM_001258311.1	Yes	No	2	Yes	Yes	No	No	No	No	No	DKFZp761A0620, FLJ11413
PICALM	8301					No	No	2	No	No	No	No	Yes	No	Yes	CLTH
PIGA	5277	ENST00000333590	NM_002641.3	ENST00000333590	NM_002641.3	No	Yes	2	Yes	No	Yes	No	No	No	No	GPI3
PIK3C2B	5287	ENST00000367187	NM_002646	ENST00000367187	NM_002646	Yes	No	2	Yes	No	No	Yes	No	No	No	C2-PI3K, PI3K-C2beta
PLAG1	5324					No	No	2	No	No	No	No	Yes	No	Yes	ZNF912
POU2AF1	5450					No	No	2	No	No	No	No	Yes	No	Yes	BOB1, OBF1
PPP2R2A	5520	ENST00000380737	NM_002717.3	ENST00000380737	NM_002717.3	No	Yes	2	Yes	No	No	Yes	No	No	No	B55A, B55alpha, PR52A, PR55A, PR55alpha
PRCC	5546	ENST00000271526	NM_005973	ENST00000271526	NM_005973	Yes	No	2	Yes	No	No	No	No	No	Yes	RCCP1
PRDM16	63976					No	No	2	No	No	No	No	Yes	No	Yes	KIAA1675, KMT8F, MEL1, MGC166915, PFM13
PRKACA	5566	ENST00000308677	NM_002730.3	ENST00000308677	NM_002730.3	Yes	No	2	Yes	No	No	No	No	No	Yes	PKACa
PRKDC	5591	ENST00000314191	NM_006904.6	ENST00000314191	NM_006904.7	Yes	Yes	2	Yes	No	No	No	Yes	No	No	DNA-PKC, DNA-PKcs, DNAPK, DNAPKc, DNPK1, HYRC, HYRC1, XRCC7, p350, p460
PRRX1	5396					No	No	2	No	No	No	No	Yes	No	Yes	PHOX1, PMX1
PSIP1	11168					No	No	2	No	No	No	No	Yes	No	Yes	DFS70, LEDGF, PSIP2
PTPN1	5770	ENST00000371621	NM_001278618.1	ENST00000371621	NM_001278618.1	Yes	Yes	2	Yes	No	Yes	No	No	No	No	PTP1B
PTPN13	5783	ENST00000411767	NM_080683	ENST00000411767	NM_080683	No	Yes	2	Yes	No	No	No	No	No	Yes	PTP-BAS, PTP-BL, PTP1E, PTPL1
PTPRO	5800					No	No	2	No	No	No	Yes	Yes	No	No	GLEPP1, NPHS6, PTP-U2, PTP-oc, PTPU2
RABEP1	9135					No	No	2	No	No	No	No	Yes	No	Yes	RAB5EP, RABPT5, neurocrescin, rabaptin-5
RANBP2	5903	ENST00000283195	NM_006267	ENST00000283195	NM_006267	Yes	No	2	Yes	No	No	No	No	No	Yes	ADANE, ANE1, NUP358
RAP1GDS1	5910					No	No	2	No	No	No	No	Yes	No	Yes	SmgGDS
RELN	5649	ENST00000428762	NM_005045.3	ENST00000428762	NM_005045.3	No	No	2	Yes	No	No	No	Yes	No	No	PRO1598, RL
REST	5978	ENST00000309042	NM_001193508.1	ENST00000309042	NM_001193508.1	No	Yes	2	Yes	Yes	No	No	No	No	No	DFNA27, NRSF, XBR
RHOH	399					No	No	2	No	No	No	No	Yes	No	Yes	ARHH, TTF
RNF213	57674					No	No	2	No	No	No	No	Yes	No	Yes	ALO17, C17orf27, KIAA1554, KIAA1618, MYMY2, NET57
ROBO1	6091	ENST00000464233	NM_002941.3	ENST00000464233	NM_002941.3	No	Yes	2	Yes	No	Yes	No	No	No	No	DUTT1, FLJ21882, SAX3
RPL22	6146					No	No	2	No	No	No	No	Yes	No	Yes	EAP, L22
RPL5	6125	ENST00000370321	NM_000969	ENST00000370321	NM_000969	No	Yes	2	Yes	No	No	No	No	No	Yes	L5, PPP1R135, uL18
RPN1	6184					No	No	2	No	No	No	No	Yes	No	Yes	
RSPO2	340419					No	No	2	No	No	No	Yes	No	No	Yes	MGC35555
SAMHD1	25939	ENST00000262878	NM_015474.3	ENST00000646673	NM_015474.3	No	Yes	2	Yes	No	Yes	No	No	No	No	AGS5, HDDC1, MOP-5, Mg11, SBBI88
SCG5	6447	ENST00000300175	NM_001144757.1	ENST00000300175	NM_001144757.1	Yes	No	2	Yes	Yes	No	No	No	No	No	7B2, SGNE1, SgV
SDC4	6385					No	No	2	No	No	No	Yes	No	No	Yes	SYND4, amphiglycan, ryudocan
SERPINB3	6317	ENST00000283752	NM_006919.2	ENST00000283752	NM_006919.2	Yes	Yes	2	Yes	Yes	No	No	No	No	No	HsT1196, SCC, SCCA1, T4-A
SERPINB4	6318	ENST00000341074	NM_002974.3	ENST00000341074	NM_002974.3	No	No	2	Yes	Yes	No	No	No	No	No	LEUPIN, PI11, SCCA-2, SCCA2
SETD1A	9739	ENST00000262519	NM_014712.2	ENST00000262519	NM_014712.2	Yes	No	2	Yes	No	Yes	No	No	No	No	KIAA0339, KMT2F, SET1A, Set1
SETD1B	23067	ENST00000604567	XM_005253858.3	ENST00000604567	XM_005253858.3	No	No	2	Yes	No	Yes	No	No	No	No	KIAA1076, KMT2G, Set1B
SETD3	84193	ENST00000331768	NM_032233.2	ENST00000331768	NM_032233.2	No	No	2	Yes	No	Yes	No	No	No	No	C14orf154, FLJ23027
SETD4	54093	ENST00000332131	NM_017438.4	ENST00000332131	NM_017438.4	No	No	2	Yes	No	Yes	No	No	No	No	C21orf18, C21orf27
SETD5	55209	ENST00000402198	NM_001080517.2	ENST00000402198	NM_001080517.2	No	No	2	Yes	No	Yes	No	No	No	No	FLJ10707
SETD6	79918	ENST00000219315	NM_001160305.1	ENST00000219315	NM_001160305.1	No	No	2	Yes	No	Yes	No	No	No	No	FLJ21148
SETD7	80854	ENST00000274031	NM_001306199.1	ENST00000274031	NM_001306199.1	No	No	2	Yes	No	Yes	No	No	No	No	KIAA1717, KMT7, SET7, SET7/9, Set9
SETDB2	83852	ENST00000354234	NM_031915.2	ENST00000317257	NM_031915.2	No	Yes	2	Yes	No	Yes	No	No	No	No	C13orf4, CLLD8, CLLL8, KMT1F
SH3GL1	6455					No	No	2	No	No	No	No	Yes	No	Yes	CNSA1, EEN, MGC111371, SH3D2B, SH3P8
SLC34A2	10568					No	No	2	No	No	No	Yes	No	No	Yes	NAPI-3B
SLFN11	91607	ENST00000308377	NM_001104587.1	ENST00000308377	NM_001104587.1	No	Yes	2	Yes	Yes	No	No	No	No	No	FLJ34922
SMARCA1	6594	ENST00000371122	NM_003069	ENST00000371122	NM_003069	Yes	Yes	2	Yes	No	No	No	Yes	No	No	ISWI, NURF140, SNF2L, SNF2L1, SNF2LB, SWI, hSNF2L
SMARCA2	6595	ENST00000349721	NM_001289396.1	ENST00000349721	NM_001289396.1	No	Yes	2	Yes	Yes	No	No	No	No	No	BAF190, BRM, SNF2, SNF2L2, SNF2LA, SWI2, Sth1p, hBRM, hSNF2a
SMG1	23049	ENST00000446231	NM_015092.4	ENST00000446231	NM_015092.4	No	Yes	2	Yes	No	Yes	No	No	No	No	KIAA0421, LIP
SOCS3	9021	ENST00000330871	NM_003955.4	ENST00000330871	NM_003955.4	No	Yes	2	Yes	No	No	No	Yes	No	No	CIS3, Cish3, SOCS-3, SSI-3
SOX10	6663	ENST00000360880	NM_006941	ENST00000360880	NM_006941	Yes	No	2	Yes	No	No	No	Yes	No	No	DOM, WS2E, WS4
SP140	11262	ENST00000392045	NM_007237.4	ENST00000392045	NM_007237.4	No	Yes	2	Yes	No	Yes	No	No	No	No	LYSP100-A, LYSP100-B
SPRTN	83932	ENST00000295050	NM_032018.6	ENST00000295050	NM_032018.6	No	Yes	2	Yes	Yes	No	No	No	No	No	C1orf124, DKFZP547N043, DVC1, Spartan
SRSF3	6428					No	No	2	No	No	No	No	Yes	No	Yes	SFRS3, SRp20
SSX1	6756					No	No	2	No	No	No	No	Yes	No	Yes	CT5.1
SSX2	6757					No	No	2	No	No	No	No	Yes	No	Yes	CT5.2a, HD21, HOM-MEL-40, MGC119055, MGC15364, MGC3884, SSX
SSX4	6759					No	No	2	No	No	No	No	Yes	No	Yes	CT5.4
STAG1	10274	ENST00000383202	NM_005862.2	ENST00000383202	NM_005862.2	No	Yes	2	Yes	No	Yes	No	No	No	No	SA-1, SA1, SCC3A
STAT4	6775	ENST00000358470	NM_001243835	ENST00000358470	NM_001243835	Yes	No	2	Yes	No	No	No	Yes	No	No	
TAF1	6872	ENST00000423759	NM_001286074.1	ENST00000423759	NM_004606.5	Yes	No	2	Yes	No	No	No	Yes	No	No	BA2R, CCG1, CCGS, DYT3, DYT3/TAF1, KAT4, NSCL2, TAFII250
TAF15	8148					No	No	2	No	No	No	No	Yes	No	Yes	Npl3, RBP56, TAF2N, hTAFII68
TAL2	6887					No	No	2	No	No	No	No	Yes	No	Yes	bHLHa19
TET3	200424	ENST00000409262	NM_144993	ENST00000409262	NM_144993	No	Yes	2	Yes	No	Yes	No	No	No	No	MGC22014, hCG_40738
TFG	10342					No	No	2	No	No	No	No	Yes	No	Yes	FLJ36137, SPG57, TF6
TPM3	7170					No	No	2	No	No	No	No	Yes	No	Yes	NEM1, TRK
TPM4	7171					No	No	2	No	No	No	No	Yes	No	Yes	
TRA	6955					Yes	No	2	Yes	No	No	No	No	No	Yes	TCRA, TRA@
TRB	6957					Yes	No	2	Yes	No	No	No	No	No	Yes	TCRB, TRB@
TRD	6964					Yes	No	2	Yes	No	No	No	No	No	Yes	TCRD, TCRDV1, TRD@
TRG	6965					Yes	No	2	Yes	No	No	No	Yes	No	No	TCRG, TRG@
TRIM24	8805					No	No	2	No	No	No	No	Yes	No	Yes	RNF82, TIF1, TIF1A, Tif1a, hTIF1
TRIM27	5987	ENST00000377199	NM_006510	ENST00000377199	NM_006510	Yes	No	2	Yes	No	No	No	No	No	Yes	RFP, RNF76
TRIP11	9321					No	No	2	No	No	No	No	Yes	No	Yes	CEV14, GMAP-210, GMAP210, Trip230
TRIP13	9319	ENST00000166345	NM_004237.3	ENST00000166345	NM_004237.3	Yes	Yes	2	Yes	Yes	No	No	No	No	No	16E1BP
VAV1	7409	ENST00000602142	NM_005428.3	ENST00000602142	NM_005428.3	Yes	No	2	Yes	No	Yes	No	No	No	No	VAV
VAV2	7410	ENST00000371850	NM_001134398.1	ENST00000371850	NM_001134398.1	Yes	No	2	Yes	No	Yes	No	No	No	No	
WIF1	11197	ENST00000286574	NM_007191.4	ENST00000286574	NM_007191.4	No	Yes	2	Yes	No	No	No	No	No	Yes	
WRN	7486	ENST00000298139	NM_000553	ENST00000298139	NM_000553	No	Yes	2	Yes	No	No	No	No	No	Yes	RECQ3, RECQL2
XPA	7507	ENST00000375128	NM_000380	ENST00000375128	NM_000380	No	Yes	2	Yes	No	No	No	No	No	Yes	XP1, XPAC
XPC	7508	ENST00000285021	NM_004628	ENST00000285021	NM_004628	No	Yes	2	Yes	No	No	No	No	No	Yes	RAD4, XPCC
ZBTB16	7704					No	No	2	No	No	No	No	Yes	No	Yes	PLZF, ZNF145
ZBTB7A	51341	ENST00000322357	NM_015898	ENST00000322357	NM_015898	Yes	Yes	2	Yes	No	Yes	No	No	No	No	DKFZp547O146, FBI-1, LRF, ZBTB7, ZNF857A, pokemon
ZMYM2	7750					No	No	2	No	No	No	No	Yes	No	Yes	FIM, RAMP, ZNF198
ZMYM3	9203	ENST00000314425	NM_005096	ENST00000314425	NM_005096	No	Yes	2	Yes	No	No	No	Yes	No	No	DXS6673E, KIAA0385, ZNF198L2, ZNF261
ZNF384	171017					No	No	2	No	No	No	No	Yes	No	Yes	CAGH1A, CIZ, NMP4, TNRC1
ZNF521	25925					No	No	2	No	No	No	No	Yes	No	Yes	EHZF, Evi3
ZNF703	80139					No	No	2	No	No	No	Yes	Yes	No	No	FLJ14299, NLZ1, ZEPPO1, ZNF503L, Zpo1
ZNRF3	84133	ENST00000544604	NM_001206998.1	ENST00000544604	NM_001206998.1	No	Yes	2	Yes	Yes	No	No	No	No	No	BK747E2.3, FLJ22057, KIAA1133, RNF203
ABCB1	5243	ENST00000265724	NM_000927.4	ENST00000622132	NM_001348946.2	Yes	No	1	Yes	No	No	No	No	No	No	ABC20, CD243, CLCS, GP170, MDR1, P-gp, PGY1, p-170
ACSL3	2181					No	No	1	No	No	No	No	No	No	Yes	FACL3, PRO2194
ACSL6	23305					No	No	1	No	No	No	No	Yes	No	No	FACL6, KIAA0837, LACS5
ACTB	60					No	No	1	No	No	No	No	Yes	No	No	
ADHFE1	137872	ENST00000396623	NM_144650	ENST00000396623	NM_144650	Yes	No	1	Yes	No	No	No	No	No	No	FLJ32430
AFF3	3899					No	No	1	No	No	No	No	No	No	Yes	LAF4, MLLT2-like
AJUBA	84962	ENST00000262713	NM_032876.5	ENST00000262713	NM_032876.5	No	Yes	1	Yes	No	No	No	No	No	No	JUB, MGC15563
ALDH1L2	160428	ENST00000258494	NM_001034173	ENST00000258494	NM_001034173	Yes	No	1	Yes	No	No	No	No	No	No	FLJ38508, mtFDH
ALDH2	217	ENST00000261733	NM_000690	ENST00000261733	NM_000690	No	Yes	1	Yes	No	No	No	No	No	No	
ANKRD26	22852	ENST00000376087	NM_001256053	ENST00000376087	NM_001256053	Yes	No	1	Yes	No	No	No	No	No	No	KIAA1074, THC2
APH1A	51107					No	No	1	No	No	No	No	Yes	No	No	APH-1A, CGI-78
APOBEC3B	9582					No	No	1	No	No	No	No	No	No	Yes	FLJ21201, PHRBNL
ASMTL	8623					No	No	1	No	No	No	No	Yes	No	No	
ASPSCR1	79058					No	No	1	No	No	No	No	No	No	Yes	ASPL, ASPS, TUG, UBXD9, UBXN9
ATG5	9474					No	No	1	No	No	No	No	Yes	No	No	APG5, APG5L, hAPG5
ATP2B3	492					No	No	1	No	No	No	No	No	No	Yes	CFAP39, CLA2, PMCA3, SCAX1
ATRIP	84126	ENST00000320211	NM_130384	ENST00000320211	NM_130384	No	Yes	1	Yes	No	No	No	No	No	No	FLJ12343, MGC20625, MGC21482, MGC26740
BAALC	79870	ENST00000297574	null	ENST00000297574	null	Yes	No	1	Yes	No	No	No	No	No	No	
BAX	581					No	No	1	No	No	No	No	No	No	Yes	BCL2L4
BCL9L	283149					No	No	1	No	No	No	No	No	No	Yes	B9L, Bcl9-2, DLNB11
BTLA	151888					No	No	1	No	No	No	No	Yes	No	No	BTLA1, CD272
BUB1B	701					No	No	1	No	No	No	No	No	No	Yes	BUBR1, Bub1A, MAD3L, SSK1
CBLB	868					No	No	1	No	No	No	No	No	No	Yes	Cbl-b, RNF56
CBLC	23624					No	No	1	No	No	No	No	No	No	Yes	CBL-3, CBL-SL, RNF57
CCDC6	8030					No	No	1	No	No	No	No	No	No	Yes	D10S170, H4, TPC, TST1
CCN6	8838					No	No	1	No	No	No	No	Yes	No	No	WISP-3, WISP3
CCNB1IP1	57820					No	No	1	No	No	No	No	No	No	Yes	C14orf18, HEI10
CCNB3	85417	ENST00000276014	NM_033031.2	ENST00000276014	NM_033031.2	Yes	No	1	Yes	No	No	No	No	No	No	
CCT6B	10693					No	No	1	No	No	No	No	Yes	No	No	Cctz2, TSA303
CD19	930	ENST00000324662	NM_001770	ENST00000538922	NM_001770	Yes	No	1	Yes	No	No	No	No	No	No	
CD36	948					No	No	1	No	No	No	No	Yes	No	No	GP3B, GP4, GPIV, SCARB3
CDH2	1000	ENST00000269141	NM_001792	ENST00000269141	NM_001792	Yes	No	1	Yes	No	No	No	No	No	No	CD325, CDHN, NCAD
CDH4	1002	ENST00000360469	NM_001794	ENST00000614565	NM_001794	Yes	No	1	Yes	No	No	No	No	No	No	
CHCHD7	79145					No	No	1	No	No	No	No	No	No	Yes	COX23, MGC2217
CHIC2	26511					No	No	1	No	No	No	No	Yes	No	No	BTL
CHN1	1123					No	No	1	No	No	No	No	Yes	No	No	ARHGAP2, CHN, DURS2, n-chimerin
CHTF8	54921	ENST00000398235	NM_001039690	ENST00000398235	NM_001039690	No	Yes	1	Yes	No	No	No	No	No	No	CTF8, FLJ20400
CILK1	22858					No	No	1	No	No	No	No	Yes	No	No	ICK, KIAA0936, LCK2, MGC46090
CKS1B	1163					No	No	1	No	No	No	No	Yes	No	No	ckshs1
CLIP1	6249					No	No	1	No	No	No	No	No	No	Yes	CLIP-170, CLIP170, CYLN1, RSN
CLP1	10978					No	No	1	No	No	No	No	Yes	No	No	HEAB, hClp1
CNBP	7555					No	No	1	No	No	No	No	No	No	Yes	CNBP1, DM2, RNF163, ZCCHC22, ZNF9
CNOT3	4849					No	No	1	No	No	No	No	No	No	Yes	KIAA0691, LENG2, NOT3, NOT3H
CPS1	1373					No	No	1	No	No	No	No	Yes	No	No	
CRTC1	23373					No	No	1	No	No	No	No	No	No	Yes	FLJ14027, KIAA0616, MECT1, TORC1
CRTC3	64784					No	No	1	No	No	No	No	No	No	Yes	FLJ21868
CSF1	1435					No	No	1	No	No	No	No	Yes	No	No	M-CSF, MCSF, MGC31930
CTDNEP1	23399	ENST00000318988	NM_015343.4	ENST00000574322	NM_001143775.2	No	Yes	1	Yes	No	No	No	No	No	No	DULLARD, HSA011916, NET56
CYP17A1	1586					No	No	1	No	No	No	Yes	No	No	No	CPT7, CYP17, P450C17, S17AH
DAZAP1	26528	ENST00000233078	NM_018959.3	ENST00000233078	NM_018959.3	No	No	1	Yes	No	No	No	No	No	No	MGC19907
DCTN1	1639					No	No	1	No	No	No	No	No	No	Yes	
DDR1	780					No	No	1	No	No	No	Yes	No	No	No	CAK, CD167, EDDR1, NEP, NTRK4, PTK3A, RTK6
DDX4	54514	ENST00000505374	NM_024415.2	ENST00000505374	NM_024415.2	Yes	No	1	Yes	No	No	No	No	No	No	VASA
DDX41	51428	ENST00000507955	NM_016222.2	ENST00000330503	NM_016222.4	No	Yes	1	Yes	No	No	No	No	No	No	ABS, MGC8828
DKK1	22943	ENST00000373970	NM_012242.2	ENST00000373970	NM_012242.2	No	No	1	Yes	No	No	No	No	No	No	DKK-1, SK
DKK2	27123	ENST00000285311	NM_014421.2	ENST00000285311	NM_014421.2	No	No	1	Yes	No	No	No	No	No	No	
DKK3	27122	ENST00000326932	NM_001018057.1	ENST00000326932	NM_001018057.1	No	No	1	Yes	No	No	No	No	No	No	REIC
DKK4	27121	ENST00000220812	NM_014420.2	ENST00000220812	NM_014420.2	No	No	1	Yes	No	No	No	No	No	No	
DPYD	1806	ENST00000370192	NM_000110	ENST00000370192	NM_000110	No	No	1	Yes	No	No	No	No	No	No	DHPDHase, DPD
DUSP2	1844					No	No	1	No	No	No	No	Yes	No	No	PAC-1
DUSP9	1852					No	No	1	No	No	No	No	Yes	No	No	MKP-4, MKP4
ECSIT	51295	ENST00000270517	NM_016581	ENST00000270517	NM_016581	Yes	No	1	Yes	No	No	No	No	No	No	SITPEC
EIF2B1	1967	ENST00000424014	NM_001414	ENST00000424014	NM_001414	No	Yes	1	Yes	No	No	No	No	No	No	EIF-2B, EIF-2Balpha, EIF2B, EIF2BA
ELL2	22936	ENST00000237853	NM_012081.5	ENST00000237853	NM_012081.6	Yes	Yes	1	Yes	No	No	No	No	No	No	MRCCAT1
ELP2	55250					No	No	1	No	No	No	No	Yes	No	No	FLJ10879, STATIP1, StIP
ERCC1	2067	ENST00000300853	NM_001983	ENST00000300853	NM_001983	No	Yes	1	Yes	No	No	No	No	No	No	RAD10
EXOSC6	118460					No	No	1	No	No	No	No	Yes	No	No	EAP4, MTR3, Mtr3p, hMtr3p, p11
EXT2	2132					No	No	1	No	No	No	No	No	No	Yes	SOTV
FAF1	11124					No	No	1	No	No	No	No	Yes	No	No	CGI-03, HFAF1s, UBXD12, UBXN3A, hFAF1
FANCI	55215	ENST00000310775	NM_001113378.1	ENST00000310775	NM_001113378.2	No	No	1	Yes	No	No	No	No	No	No	FLJ10719, KIAA1794
FANCM	57697	ENST00000267430	NM_020937	ENST00000267430	NM_020937	No	Yes	1	Yes	No	No	No	No	No	No	FAAP250, KIAA1596
FAT4	79633					No	No	1	No	No	No	No	No	No	Yes	CDHF14, CDHR11, FAT-J
FBXO31	79791					No	No	1	No	No	No	No	Yes	No	No	
FBXW2	26190	ENST00000608872	NM_012164	ENST00000608872	NM_012164	No	No	1	Yes	No	No	No	No	No	No	FBW2, Fwd2, Md6
FGF1	2246	ENST00000337706	NM_000800	ENST00000337706	NM_000800	Yes	No	1	Yes	No	No	No	No	No	No	AFGF, ECGF, ECGF-beta, ECGFA, ECGFB, FGF-alpha, FGFA, GLIO703, HBGF1
FGF12	2257					No	No	1	No	No	No	Yes	No	No	No	FGF12B, FHF1
FGF2	2247	ENST00000608478		ENST00000644866	NM_001361665.2	Yes	No	1	Yes	No	No	No	No	No	No	FGFB
FGF5	2250	ENST00000312465	NM_004464	ENST00000312465	NM_004464	Yes	No	1	Yes	No	No	No	No	No	No	
FGF7	2252	ENST00000267843	NM_002009	ENST00000267843	NM_002009	Yes	No	1	Yes	No	No	No	No	No	No	KGF
FGF8	2253	ENST00000344255	NM_033164	ENST00000344255	NM_033164	Yes	No	1	Yes	No	No	No	No	No	No	AIGF
FGF9	2254	ENST00000382353	NM_002010	ENST00000382353	NM_002010	Yes	No	1	Yes	No	No	No	No	No	No	
FIP1L1	81608					No	No	1	No	No	No	No	No	No	Yes	DKFZp586K0717, FIP1
FLYWCH1	84256					No	No	1	No	No	No	No	Yes	No	No	DKFZp761A132
FNBP1	23048					No	No	1	No	No	No	No	Yes	No	No	FBP17, KIAA0554
FOLH1	2346	ENST00000256999	NM_004476	ENST00000256999	NM_004476	Yes	No	1	Yes	No	No	No	No	No	No	FOLH, GCPII, NAALAD1, NAALAdase, PSM, PSMA
FOLR1	2348	ENST00000312293	NM_000802	ENST00000312293	NM_000802	Yes	No	1	Yes	No	No	No	No	No	No	FOLR, FRα
FOXN4	121643	ENST00000299162	NM_213596	ENST00000299162	NM_213596	Yes	No	1	Yes	No	No	No	No	No	No	
FSTL1	11167	ENST00000295633	NM_007085	ENST00000295633	NM_007085	Yes	No	1	Yes	No	No	No	No	No	No	FRP, FSL1, OCC-1, OCC1, tsc36
FZR1	51343	ENST00000395095	NM_001136198	ENST00000395095	NM_001136198	Yes	Yes	1	Yes	No	No	No	No	No	No	CDC20C, FZR, FZR2, HCDH, HCDH1, KIAA1242
GADD45B	4616					No	No	1	No	No	No	No	Yes	No	No	DKFZP566B133, GADD45BETA, MYD118
GMPS	8833					No	No	1	No	No	No	No	Yes	No	No	GATD7
GOLGA5	9950					No	No	1	No	No	No	No	No	No	Yes	GOLIM5, golgin-84, ret-II, rfg5
GOPC	57120					No	No	1	No	No	No	No	No	No	Yes	CAL, GOPC1, PIST, dJ94G16.2
GRB7	2886	ENST00000309156	NM_001030002	ENST00000309156	NM_001030002	Yes	No	1	Yes	No	No	No	No	No	No	
GTSE1	51512					No	No	1	No	No	No	No	Yes	No	No	B99, GTSE-1
H3C15	333932	ENST00000403683	NM_001005464.2	ENST00000403683	NM_001005464.2	No	No	1	Yes	No	No	No	No	No	No	H3/n, H3/o, HIST2H3A
H3P6	440926	ENST00000316450	null	ENST00000369387		No	No	1	Yes	No	No	No	No	No	No	H3F3AP4
H4C6	8361			ENST00000244537	NM_003540	No	No	1	Yes	No	No	No	No	No	No	H4/c, H4FC, HIST1H4F
HDAC2	3066	ENST00000519065	NM_001527.3	ENST00000519065	NM_001527.3	Yes	No	1	Yes	No	No	No	No	No	No	KDAC2, YAF1
HFE	3077	ENST00000357618	NM_000410	ENST00000357618	NM_000410	Yes	No	1	Yes	No	No	No	No	No	No	HFE1
HNF1B	6928	ENST00000225893	NM_001165923	ENST00000617811	NM_000458	No	No	1	Yes	No	No	No	No	No	No	HNF1beta, LFB3, MODY5, TCF2, VHNF1
HNRNPA2B1	3181					No	No	1	No	No	No	No	No	No	Yes	HNRPA2B1
HOOK3	84376					No	No	1	No	No	No	No	No	No	Yes	
HOXA3	3200					No	No	1	No	No	No	No	Yes	No	No	HOX1E
HSD17B2	3294	ENST00000199936	NM_002153	ENST00000199936	NM_002153	No	Yes	1	Yes	No	No	No	No	No	No	HSD17, SDR9C2
HTATIP2	10553	ENST00000421577	NM_001098521	ENST00000421577	NM_001098521	No	Yes	1	Yes	No	No	No	No	No	No	CC3, FLJ26963, SDR44U1, TIP30
ID1	3397	ENST00000376112	NM_002165	ENST00000376112	NM_002165	Yes	No	1	Yes	No	No	No	No	No	No	bHLHb24, dJ857M17.1.2
IFNAR1	3454	ENST00000270139	NM_000629	ENST00000270139	NM_000629	No	No	1	Yes	No	No	No	No	No	No	IFNAR, IFRC
IKBKB	3551					No	No	1	No	No	No	No	No	No	Yes	IKK-beta, IKK2, IKKB, NFKBIKB
IKZF2	22807					No	No	1	No	No	No	No	Yes	No	No	Helios, ZNFN1A2
IL2	3558					No	No	1	No	No	No	No	No	No	Yes	IL-2, TCGF
ING1	3621	ENST00000375774	NM_005537	ENST00000375774	NM_005537	No	Yes	1	Yes	No	No	No	No	No	No	p24ING1c, p33, p33ING1, p33ING1b, p47, p47ING1a
INPP5D	3635					No	No	1	No	No	No	No	Yes	No	No	SHIP, SHIP1, hp51CN
INTS6	26512	ENST00000311234	NM_012141	ENST00000311234	NM_012141	No	Yes	1	Yes	No	No	No	No	No	No	DBI-1, DDX26, DDX26A, DICE1, HDB, Notchl2
IQGAP1	8826	ENST00000268182	NM_003870	ENST00000268182	NM_003870	Yes	No	1	Yes	No	No	No	No	No	No	HUMORFA01, KIAA0051, p195
IRS4	8471					No	No	1	No	No	No	No	No	No	Yes	IRS-4, PY160
ITPKB	3707	ENST00000272117	NM_002221	ENST00000272117	NM_002221	Yes	No	1	Yes	No	No	No	No	No	No	IP3-3KB, IP3KB
JAZF1	221895					No	No	1	No	No	No	No	Yes	No	No	DKFZp761K2222, TIP27, ZNF802
KAT6B	23522					No	No	1	No	No	No	No	No	No	Yes	MOZ2, MYST4, Morf, ZC2HC6B, qkf, querkopf
KAT7	11143	ENST00000259021	NM_007067	ENST00000259021	NM_007067	Yes	No	1	Yes	No	No	No	No	No	No	HBO1, HBOA, MYST2, ZC2HC7
KCNJ5	3762					No	No	1	No	No	No	No	No	No	Yes	GIRK4, KATP1, Kir3.4, LQT13
KDM2B	84678					No	No	1	No	No	No	No	Yes	No	No	CXXC2, FBXL10, Fbl10, JHDM1B, PCCX2
KDM4C	23081					No	No	1	No	No	No	No	Yes	No	No	GASC1, JMJD2C, KIAA0780, TDRD14C
KDM5D	8284	ENST00000317961	NM_004653	ENST00000317961	NM_004653	Yes	Yes	1	Yes	No	No	No	No	No	No	HY, HYA, JARID1D, KIAA0234, SMCY
KLF2	10365	ENST00000248071	NM_016270.2	ENST00000248071	NM_016270.2	No	Yes	1	Yes	No	No	No	No	No	No	LKLF
KLF3	51274	ENST00000261438	NM_016531.5	ENST00000261438	NM_016531.5	No	Yes	1	Yes	No	No	No	No	No	No	BKLF
KLF6	1316					No	No	1	No	No	No	No	No	No	Yes	BCD1, COPEB, CPBP, GBF, PAC1, ST12, Zf9
KLK2	3817					No	No	1	No	No	No	No	No	No	Yes	
KNL1	57082					No	No	1	No	No	No	No	No	No	Yes	AF15Q14, CASC5, CT29, D40, KIAA1570, MCPH4, PPP1R55, Spc7, hKNL-1, hSpc105
KTN1	3895					No	No	1	No	No	No	No	No	No	Yes	KIAA0004, KNT
LARP4B	23185	ENST00000316157	NM_015155.2	ENST00000316157	NM_015155.2	No	No	1	Yes	No	No	No	No	No	No	KIAA0217, LARP5
LCP1	3936					No	No	1	No	No	No	No	Yes	No	No	CP64, L-PLASTIN, LC64P, PLS2
LGR5	8549	ENST00000266674	NM_003667	ENST00000266674	NM_003667	Yes	No	1	Yes	No	No	No	No	No	No	FEX, GPR49, GPR67, HG38
LIFR	3977					No	No	1	No	No	No	No	No	No	Yes	CD118
LRIG3	121227					No	No	1	No	No	No	No	No	No	Yes	FLJ90440, KIAA3016
LRP5	4041	ENST00000294304	NM_001291902.1	ENST00000294304	NM_001291902.1	Yes	Yes	1	Yes	No	No	No	No	No	No	BMND1, EVR1, EVR4, LR3, LRP7, OPPG, OPS, OPTA1, VBCH2
LRP6	4040	ENST00000261349	NM_002336.2	ENST00000261349	NM_002336.2	Yes	No	1	Yes	No	No	No	No	No	No	ADCAD2
LRRK2	120892					No	No	1	No	No	No	No	Yes	No	No	DKFZp434H2111, FLJ45829, PARK8, RIPK7, ROCO2
MAGED1	9500					No	No	1	No	No	No	No	Yes	No	No	DLXIN-1, NRAGE
MAL2	114569	ENST00000276681	NM_052886.2	ENST00000614891	NM_052886.3	No	Yes	1	Yes	No	No	No	No	No	No	
MAML2	84441					No	No	1	No	No	No	No	No	No	Yes	KIAA1819, MAM3
MAP3K21	84451	ENST00000366624	NM_032435	ENST00000366624	NM_032435	Yes	No	1	Yes	No	No	No	No	No	No	KIAA1804, MLK4
MAP3K6	9064					No	No	1	No	No	No	No	Yes	No	No	ASK2, MAPKKK6, MEKK6
MAP4K4	9448	ENST00000347699	NM_001242559	ENST00000347699	NM_001242559	Yes	No	1	Yes	No	No	No	No	No	No	FLH21957, HGK, NIK
MBD4	8930	ENST00000249910	NM_003925	ENST00000249910	NM_003925	No	Yes	1	Yes	No	No	No	No	No	No	
MBD6	114785	ENST00000355673	NM_052897.3	ENST00000355673	NM_052897.3	No	Yes	1	Yes	No	No	No	No	No	No	KIAA1887
MDS2	259283					No	No	1	No	No	No	No	Yes	No	No	
MEF2D	4209	ENST00000348159	NM_005920.3	ENST00000348159	NM_005920.3	Yes	No	1	Yes	No	No	No	No	No	No	
MIB1	57534					No	No	1	No	No	No	No	Yes	No	No	DIP-1, KIAA1323, MIB, ZZANK2, ZZZ6
MIDEAS	91748	ENST00000286523	NM_001043318.2	ENST00000286523	NM_001043318.2	No	Yes	1	Yes	No	No	No	No	No	No	C14orf117, C14orf43, ELMSAN1, LSR68
MKNK1	8569					No	No	1	No	No	No	Yes	No	No	No	MNK1
MLH3	27030	ENST00000355774	NM_001040108	ENST00000355774	NM_001040108	No	Yes	1	Yes	No	No	No	No	No	No	
MLLT11	10962					No	No	1	No	No	No	No	No	No	Yes	AF1Q
MNX1	3110					No	No	1	No	No	No	No	Yes	No	No	HB9, HLXB9, HOXHB9, SCRA1
MS4A1	931	ENST00000345732	NM_021950	ENST00000345732	NM_021950	No	No	1	Yes	No	No	No	No	No	No	B1, Bp35, CD20, FMC7
MTCP1	4515					No	No	1	No	No	No	No	No	No	Yes	P13MTCP1, TCL1C, p8MTCP1
MTHFD2	10797	ENST00000394053	NM_006636	ENST00000394053	NM_006636	Yes	No	1	Yes	No	No	No	No	No	No	
MYBL1	4603	ENST00000522677	NM_001080416	ENST00000522677	NM_001080416	Yes	No	1	Yes	No	No	No	No	No	No	A-myb, AMYB
MYO18A	399687					No	No	1	No	No	No	No	Yes	No	No	KIAA0216, MysPDZ
NAB2	4665					No	No	1	No	No	No	No	No	No	Yes	MADER
NACA	4666					No	No	1	No	No	No	No	Yes	No	No	NACA1
NBEAP1	606					No	No	1	No	No	No	No	Yes	No	No	BCL8, BCL8A
NCOA1	8648					No	No	1	No	No	No	No	No	No	Yes	F-SRC-1, KAT13A, NCoA-1, RIP160, bHLHe74
NCOA4	8031					No	No	1	No	No	No	No	No	No	Yes	ARA70, DKFZp762E1112, ELE1, PTC3, RFG
NFATC2	4773					No	No	1	No	No	No	No	No	No	Yes	NF-ATP, NFAT1, NFATp
NFIB	4781					No	No	1	No	No	No	No	No	No	Yes	NFI-RED, NFIB2, NFIB3
NFKBIE	4794					No	No	1	No	No	No	No	No	No	Yes	IKBE
NHERF1	9368	ENST00000262613	NM_004252	ENST00000262613	NM_004252	Yes	Yes	1	Yes	No	No	No	No	No	No	EBP50, NHERF, SLC9A3R1
NOD1	10392					No	No	1	No	No	No	No	Yes	No	No	CARD4, CLR7.1, NLRC1
NONO	4841					No	No	1	No	No	No	No	No	No	Yes	NMT55, NRB54, P54, P54NRB, PPP1R114
NQO1	1728	ENST00000320623	NM_000903	ENST00000320623	NM_000903	Yes	No	1	Yes	No	No	No	No	No	No	DHQU, DIA4, NMOR1, QR1
NUTM2A	728118					No	No	1	No	No	No	No	Yes	No	No	FAM22A
NUTM2B	729262					No	No	1	No	No	No	No	No	No	Yes	FAM22B, bA119F19.1
NUTM2D	728130					No	No	1	No	No	No	No	No	No	Yes	FAM22D
OLIG2	10215					No	No	1	No	No	No	No	No	No	Yes	BHLHB1, OLIGO2, PRKCBP2, RACK17, bHLHe19
OMD	4958					No	No	1	No	No	No	No	Yes	No	No	SLRR2C, osteoadherin
ONECUT2	9480	ENST00000491143	NM_004852	ENST00000491143	NM_004852	Yes	No	1	Yes	No	No	No	No	No	No	OC-2
PAG1	55824					No	No	1	No	No	No	No	Yes	No	No	PAG
PAK3	5063					No	No	1	No	No	No	No	Yes	No	No	MRX30, MRX47, bPAK, hPAK3
PARP2	10038					No	No	1	No	No	No	Yes	No	No	No	ADPRTL2, ARTD2
PARP3	10039					No	No	1	No	No	No	Yes	No	No	No	ADPRT3, ADPRTL3, ARTD3, IRT1, hPARP-3, pADPRT-3
PASK	23178					No	No	1	No	No	No	No	Yes	No	No	KIAA0135, PASKIN, STK37
PATZ1	23598					No	No	1	No	No	No	No	No	No	Yes	MAZR, PATZ, RIAZ, ZBTB19, ZNF278, ZSG, dJ400N23
PC	5091					No	No	1	No	No	No	No	Yes	No	No	PCB
PCLO	27445					No	No	1	No	No	No	No	Yes	No	No	ACZ, DKFZp779G1236, KIAA0559
PCSK7	9159					No	No	1	No	No	No	No	Yes	No	No	LPC, PC7, PC8, SPC7
PDCD11	22984					No	No	1	No	No	No	No	Yes	No	No	ALG-4, KIAA0185, NFBP, RRP5
PHF1	5252					No	No	1	No	No	No	No	Yes	No	No	MTF2L2, PCL1, TDRD19C
PHF19	26147	ENST00000373896	NM_015651	ENST00000373896	NM_015651	Yes	No	1	Yes	No	No	No	No	No	No	DKFZP727G051, MTF2L1, PCL3, TDRD19B
PHLPP1	23239	ENST00000262719	NM_194449	ENST00000262719	NM_194449	No	Yes	1	Yes	No	No	No	No	No	No	KIAA0606, PHLPP, PLEKHE1, PPM3A, SCOP
PHLPP2	23035	ENST00000568954	NM_015020	ENST00000568954	NM_015020	No	Yes	1	Yes	No	No	No	No	No	No	KIAA0931, PHLPPL, PPM3B
POLG	5428	ENST00000268124	NM_001126131	ENST00000268124	NM_001126131	No	No	1	Yes	No	No	No	No	No	No	POLG1, POLGA
POLQ	10721					No	No	1	No	No	No	No	No	No	Yes	
POU2F2	5452	ENST00000526816	NM_001207025	ENST00000526816	NM_001207025	Yes	No	1	Yes	No	No	No	No	No	No	OTF2
POU3F2	5454	ENST00000328345	NM_005604	ENST00000328345	NM_005604	Yes	No	1	Yes	No	No	No	No	No	No	BRN2, OCT7, OTF7, POUF3
POU3F4	5456	ENST00000373200	NM_000307	ENST00000644024	NM_000307	Yes	No	1	Yes	No	No	No	No	No	No	BRN4, DFN3, DFNX2, OTF9
POU5F1	5460					No	No	1	No	No	No	No	No	No	Yes	MGC22487, OTF3, Oct4
PPFIBP1	8496					No	No	1	No	No	No	No	No	No	Yes	SGT2, hSGT2, hSgt2p
PPP1CB	5500					No	No	1	No	No	No	No	Yes	No	No	MP, PP-1B, PP1B, PP1beta, PP1c, PPP1beta
PRF1	5551					No	No	1	No	No	No	No	No	No	Yes	HPLH2, PFP
PRPF8	10594	ENST00000304992	NM_006445	ENST00000304992	NM_006445	No	Yes	1	Yes	No	No	No	No	No	No	PRPC8, Prp8, RP13, SNRNP220, hPrp8
PRSS1	5644	ENST00000311737	NM_002769.4	ENST00000311737	NM_002769.4	No	No	1	Yes	No	No	No	No	No	No	TRY1
PRSS8	5652					No	No	1	No	No	No	No	Yes	No	No	
PSMB2	5690	ENST00000373237	NM_002794	ENST00000373237	NM_002794	Yes	No	1	Yes	No	No	No	No	No	No	HC7-I
PTK6	5753					No	No	1	No	No	No	No	No	No	Yes	BRK
PTK7	5754					No	No	1	No	No	No	No	Yes	No	No	CCK4
PTPN14	5784	ENST00000366956	NM_005401	ENST00000366956	NM_005401	No	Yes	1	Yes	No	No	No	No	No	No	PEZ
PTPN6	5777					No	No	1	No	No	No	No	Yes	No	No	HCPH, PTP-1C, SHP-1, SHP1
PTPRB	5787					No	No	1	No	No	No	No	No	No	Yes	PTPB
PTPRC	5788					No	No	1	No	No	No	No	No	No	Yes	CD45, T200
PTPRK	5796					No	No	1	No	No	No	No	No	No	Yes	R-PTP-kappa
PUM1	9698	ENST00000257075	NM_014676	ENST00000257075	NM_014676	No	No	1	Yes	No	No	No	No	No	No	KIAA0099, PUMH1
RAD17	5884	ENST00000380774	NM_133339	ENST00000380774	NM_133339	No	Yes	1	Yes	No	No	No	No	No	No	CCYC, RAD17Sp, Rad24
RALGDS	5900					No	No	1	No	No	No	No	Yes	No	No	RGDS, RGF, RalGEF
RASGEF1A	221002					No	No	1	No	No	No	No	Yes	No	No	CG4853, FLJ37817
REV3L	5980	ENST00000358835	NM_002912	ENST00000358835	NM_002912	Yes	No	1	Yes	No	No	No	No	No	No	POLZ, REV3
RIOK2	55781					Yes	No	1	Yes	No	No	No	No	No	No	FLJ11159
RMI2	116028					No	No	1	No	No	No	No	No	No	Yes	BLAP18, C16orf75, MGC24665
RNASEH2A	10535	ENST00000221486	NM_006397	ENST00000221486	NM_006397	Yes	No	1	Yes	No	No	No	No	No	No	RNASEHI, RNHIA, RNHL
RNASEH2B	79621	ENST00000336617	NM_024570	ENST00000336617	NM_024570	No	Yes	1	Yes	No	No	No	No	No	No	AGS2, DLEU8, FLJ11712
RNF217-AS1	7955					No	No	1	No	No	No	No	Yes	No	No	STL
RPL10	6134					No	No	1	No	No	No	No	No	No	Yes	DXS648, DXS648E, FLJ23544, L10, QM
RPS15	6209	ENST00000592588	NM_001018	ENST00000593052	NM_001308226	Yes	No	1	Yes	No	No	No	No	No	No	MGC111130, S15
RSPO3	84870					No	No	1	No	No	No	No	No	No	Yes	FLJ14440, THSD2
RUNX2	860					No	No	1	No	No	No	No	Yes	No	No	AML3, CBFA1, CCD, CCD1, PEBP2A1, PEBP2aA1
S1PR2	9294					No	No	1	No	No	No	No	Yes	No	No	AGR16, DFNB68, EDG5, Gpcr13, H218
SALL4	57167					No	No	1	No	No	No	No	No	No	Yes	ZNF797, dJ1112F19.1
SAMD9	54809	ENST00000379958	NM_017654.3	ENST00000379958	NM_017654.4	No	No	1	Yes	No	No	No	No	No	No	C7orf5, FLJ20073, KIAA2004
SAMD9L	219285	ENST00000318238	NM_152703.2	ENST00000318238	NM_152703.5	No	No	1	Yes	No	No	No	No	No	No	C7orf6, FLJ39885, KIAA2005
SBDS	51119					No	No	1	No	No	No	No	No	No	Yes	CGI-97, FLJ10917, SDO1, SWDS
SEC31A	22872					No	No	1	No	No	No	No	Yes	No	No	ABP125, ABP130, KIAA0905, SEC31L1
SEPTIN5	5413					No	No	1	No	No	No	No	Yes	No	No	HCDCREL-1, PNUTL1, SEPT5
SEPTIN6	23157					No	No	1	No	No	No	No	Yes	No	No	KIAA0128, MGC16619, MGC20339, SEPT6
SEPTIN9	10801					No	No	1	No	No	No	No	Yes	No	No	AF17q25, KIAA0991, MSF, MSF1, PNUTL4, SEPT9, SeptD1
SERP2	387923					No	No	1	No	No	No	No	Yes	No	No	C13orf21, bA269C23.1
SF3B2	10992	ENST00000322535	NM_006842	ENST00000322535	NM_006842	Yes	No	1	Yes	No	No	No	No	No	No	Cus1, SAP145, SF3b1, SF3b145
SFPQ	6421					No	No	1	No	No	No	No	No	No	Yes	PPP1R140
SFRP1	6422	ENST00000220772	NM_003012.4	ENST00000220772	NM_003012.4	No	Yes	1	Yes	No	No	No	No	No	No	FRP-1, SARP2
SFRP2	6423	ENST00000274063	NM_003013.2	ENST00000274063	NM_003013.2	Yes	Yes	1	Yes	No	No	No	No	No	No	FRP-2, SARP1, SDF-5
SFRP4	6424					No	No	1	No	No	No	No	No	No	Yes	FRP-4, FRPHE, FRZB-2, frpHE
SIX1	6495					No	No	1	No	No	No	No	No	No	Yes	DFNA23
SLC1A2	6506					No	No	1	No	No	No	No	Yes	No	No	EAAT2, GLT-1
SLC45A3	85414					No	No	1	No	No	No	No	No	No	Yes	IPCA-2, IPCA-6, IPCA-8, PCANAP2, PCANAP6, PCANAP8, prostein
SLIT2	9353	ENST00000504154	NM_004787	ENST00000504154	NM_004787	No	No	1	Yes	No	No	No	No	No	No	SLIL3, Slit-2
SLIT3	6586	ENST00000519560	NM_003062	ENST00000519560	NM_003062	No	Yes	1	Yes	No	No	No	No	No	No	MEGF5, SLIL2, Slit-3, slit2
SNCAIP	9627					No	No	1	No	No	No	Yes	No	No	No	SYPH1
SND1	27044					No	No	1	No	No	No	No	No	No	Yes	TDRD11, p100
SNX29	92017					No	No	1	No	No	No	No	Yes	No	No	FLJ12363, RUNDC2A
SOCS2	8835					No	No	1	No	No	No	No	Yes	No	No	CIS2, Cish2, SOCS-2, SSI-2, SSI2, STATI2
SQSTM1	8878	ENST00000389805	NM_003900	ENST00000389805	NM_003900	Yes	No	1	Yes	No	No	No	No	No	No	A170, OSIL, PDB3, p62B
SRP72	6731	ENST00000342756	NM_006947	ENST00000642900	NM_006947	Yes	No	1	Yes	No	No	No	No	No	No	
SS18L1	26039					No	No	1	No	No	No	No	No	No	Yes	CREST, KIAA0693
STAT1	6772	ENST00000361099	NM_007315.3	ENST00000361099	NM_007315.3	No	No	1	Yes	No	No	No	No	No	No	ISGF-3, STAT91
STAT2	6773	ENST00000314128	NM_005419.3	ENST00000314128	NM_005419.3	No	No	1	Yes	No	No	No	No	No	No	STAT113
STIL	6491					No	No	1	No	No	No	No	No	No	Yes	MCPH7, SIL
STRN	6801					No	No	1	No	No	No	No	No	No	Yes	PPP2R6A, STRN1
SZT2	23334	ENST00000562955	NM_015284	ENST00000562955	NM_015284	No	No	1	Yes	No	No	No	No	No	No	C1orf84, FLJ10387, FLJ34502, KIAA0467, KICS1, RP11-506B15.1, SZT2A, SZT2B
TCEA1	6917					No	No	1	No	No	No	No	No	No	Yes	GTF2S, SII, TCEA, TF2S, TFIIS
TCF12	6938					No	No	1	No	No	No	No	No	No	Yes	HEB, HTF4, HsT17266, bHLHb20, p64
TCL1B	9623	ENST00000340722	NM_004918.3	ENST00000340722	NM_004918.3	Yes	No	1	Yes	No	No	No	No	No	No	TML1
TEC	7006					No	No	1	No	No	No	No	Yes	No	No	PSCTK4
TERC	7012					No	No	1	No	No	No	Yes	No	No	No	SCARNA19, TRC3, hTR
TFEB	7942					No	No	1	No	No	No	No	No	No	Yes	TCFEB, bHLHe35
TFPT	29844					No	No	1	No	No	No	No	Yes	No	No	FB1, INO80F, amida
TFRC	7037					No	No	1	No	No	No	No	Yes	No	No	CD71, TFR1, p90
TIGAR	57103	ENST00000179259	NM_020375	ENST00000179259	NM_020375	Yes	No	1	Yes	No	No	No	No	No	No	C12orf5
TIPARP	25976					No	No	1	No	No	No	Yes	No	No	No	ARTD14, DDF1, DKFZP434J214, DKFZp686N0351, PARP-1, PARP-7, PARP7, RM1, pART14
TLE1	7088	ENST00000376499	NM_001303103.1	ENST00000376499	NM_001303103.1	No	No	1	Yes	No	No	No	No	No	No	ESG1, GRG1
TLE2	7089	ENST00000262953	NM_003260.4	ENST00000262953	NM_003260.4	No	No	1	Yes	No	No	No	No	No	No	ESG, ESG2, FLJ41188, GRG2
TLE3	7090	ENST00000558939	NM_005078.3	ENST00000558939	NM_005078.3	No	No	1	Yes	No	No	No	No	No	No	ESG3, GRG3, HsT18976, KIAA1547
TLE4	7091	ENST00000376552	NM_007005.4	ENST00000376552	NM_007005.4	No	No	1	Yes	No	No	No	No	No	No	E(spl), GRG4
TLL2	7093					No	No	1	No	No	No	No	Yes	No	No	
TMEM30A	55754					No	No	1	No	No	No	No	Yes	No	No	C6orf67, CDC50A, FLJ10856
TMSB4XP8	7117					No	No	1	No	No	No	No	Yes	No	No	TMSL3
TNFRSF11A	8792					No	No	1	No	No	No	No	Yes	No	No	CD265, FEO, LOH18CR1, PDB2, RANK
TNFSF13	8741	ENST00000338784	NM_003808	ENST00000338784	NM_003808	Yes	No	1	Yes	No	No	No	No	No	No	APRIL, CD256
TONSL	4796	ENST00000409379	NM_013432	ENST00000409379	NM_013432	No	No	1	Yes	No	No	No	No	No	No	IKBR, NFKBIL2
TOP2A	7153	ENST00000423485	NM_001067	ENST00000423485	NM_001067	Yes	No	1	Yes	No	No	No	No	No	No	TOP2
TPR	7175					No	No	1	No	No	No	No	No	No	Yes	
TRIB3	57761	ENST00000217233	NM_001301188	ENST00000217233	NM_001301188	Yes	No	1	Yes	No	No	No	No	No	No	C20orf97, dJ1103G7.3
TRIM33	51592					No	No	1	No	No	No	No	No	No	Yes	FLJ11429, KIAA1113, PTC7, RFG7, TF1G, TIF1G, TIF1GAMMA, TIFGAMMA
TRRAP	8295					No	No	1	No	No	No	No	No	No	Yes	PAF400, TR-AP, Tra1
TTL	150465					No	No	1	No	No	No	No	Yes	No	No	MGC46235
TUSC3	7991					No	No	1	No	No	No	No	Yes	No	No	MGC13453, MRT22, MRT7, MagT2, N33, OST3A, SLC58A2
TYRO3	7301					No	No	1	No	No	No	Yes	No	No	No	Brt, Dtk, Etk-2, RSE, Rek, Sky, Tif
UBA1	7317					Yes	No	1	Yes	No	No	No	No	No	No	A1S9T, CFAP124, GXP1, POC20, UBE1, UBE1X
UBE2A	7319	ENST00000371558	NM_003336	ENST00000371558	NM_003336	Yes	No	1	Yes	No	No	No	No	No	No	HHR6A, HR6A, RAD6A, UBC2
UBTF	7343					Yes	No	1	Yes	No	No	No	No	No	No	NOR-90, UBF, UBF1, UBF2
UCHL1	7345	ENST00000284440	NM_004181	ENST00000284440	NM_004181	Yes	No	1	Yes	No	No	No	No	No	No	PARK5, PGP9.5, Uch-L1
USP1	7398	ENST00000339950	NM_003368.4	ENST00000339950	NM_003368.5	Yes	No	1	Yes	No	No	No	No	No	No	
WAS	7454					No	No	1	No	No	No	No	No	No	Yes	IMD2, THC, WASP, WASPA
WDCP	80304					No	No	1	No	No	No	No	No	No	Yes	C2orf44, FLJ21945, MMAP
WDR90	197335					No	No	1	No	No	No	No	Yes	No	No	C16orf15, C16orf16, C16orf17, C16orf18, C16orf19, FLJ36483, KIAA1924, POC16
WWP1	11059	ENST00000265428	NM_007013.3	ENST00000265428	NM_007013.3	Yes	No	1	Yes	No	No	No	No	No	No	AIP5, DKFZP434D2111
XRCC1	7515	ENST00000262887	NM_006297	ENST00000262887	NM_006297	No	Yes	1	Yes	No	No	No	No	No	No	RCC
YPEL5	51646					No	No	1	No	No	No	No	Yes	No	No	CGI-127
YWHAE	7531					No	No	1	No	No	No	No	No	No	Yes	FLJ45465
YY1	7528	ENST00000262238	NM_003403.4	ENST00000262238	NM_003403.4	Yes	No	1	Yes	No	No	No	No	No	No	INO80S, UCRBP, YIN-YANG-1
YY1AP1	55249					No	No	1	No	No	No	No	Yes	No	No	HCCA2, YAP, YY1AP
ZBTB20	26137	ENST00000474710	NM_001164342.2	ENST00000474710	NM_001164342.2	Yes	Yes	1	Yes	No	No	No	No	No	No	DKFZp566F123, DPZF, ODA-8S, ZNF288
ZFP36L1	677	ENST00000336440	NM_001244698.1	ENST00000336440	NM_001244698.1	No	Yes	1	Yes	No	No	No	No	No	No	Berg36, RNF162B, TIS11B, cMG1
ZFP36L2	678	ENST00000282388	NM_006887.4	ENST00000282388	NM_006887.4	No	Yes	1	Yes	No	No	No	No	No	No	ERF2, RNF162C, TIS11D
ZNF24	7572					No	No	1	No	No	No	No	Yes	No	No	KOX17, ZNF191, ZSCAN3, Zfp191
ZNF331	55422					No	No	1	No	No	No	No	No	No	Yes	RITA, ZNF361, ZNF463
ZNF750	79755	ENST00000269394	NM_024702.2	ENST00000269394	NM_024702.2	No	Yes	1	Yes	No	No	No	No	No	No	FLJ13841, Zfp750