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README.md DELETED
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- ---
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- language:
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- - protein sequences
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- datasets:
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- - Swissprot
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- tags:
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- - Protein
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- - Enzyme Commission
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- ---
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-
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- # Dataset
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-
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- Swissprot is a high quality manually annotated protein database. The dataset contains annotations with the functional properties of the proteins. Here we extract proteins with Enzyme Commission labels.
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-
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- The dataset is ported from Protinfer: https://github.com/google-research/proteinfer.
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-
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- The leaf level EC-labels are extracted and indexed, the mapping is provided in `idx_mapping.json`. Proteins without leaf-level-EC tags are removed.
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-
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-
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- ## Example
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- The protein Q87BZ2 have the following EC tags.
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-
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- EC:2.-.-.- (Transferases)
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- EC:2.7.-.- (Transferring phosphorus-containing groups)
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- EC:2.7.1.- (Phosphotransferases with an alcohol group as acceptor)
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- EC:2.7.1.30 (Glycerol kinase)
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-
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- We only extract the leaf level labels, here EC:2.7.1.30, corresponding to glycerol kinase.
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-
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-
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
dataset_infos.json DELETED
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