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Update parquet files
Browse files- .gitattributes +0 -37
- README.md +0 -30
- dataset_infos.json +0 -1
- data/dev-00000-of-00001.parquet → lightonai--SwissProt-EC-leaf/parquet-dev.parquet +2 -2
- data/test-00000-of-00001.parquet → lightonai--SwissProt-EC-leaf/parquet-test.parquet +2 -2
- data/train-00000-of-00001.parquet → lightonai--SwissProt-EC-leaf/parquet-train.parquet +2 -2
.gitattributes
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.arrow filter=lfs diff=lfs merge=lfs -text
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*.parquet filter=lfs diff=lfs merge=lfs -text
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saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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# Audio files - uncompressed
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*.pcm filter=lfs diff=lfs merge=lfs -text
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README.md
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---
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language:
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- protein sequences
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datasets:
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- Swissprot
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tags:
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- Protein
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- Enzyme Commission
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---
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# Dataset
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Swissprot is a high quality manually annotated protein database. The dataset contains annotations with the functional properties of the proteins. Here we extract proteins with Enzyme Commission labels.
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The dataset is ported from Protinfer: https://github.com/google-research/proteinfer.
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The leaf level EC-labels are extracted and indexed, the mapping is provided in `idx_mapping.json`. Proteins without leaf-level-EC tags are removed.
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## Example
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The protein Q87BZ2 have the following EC tags.
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EC:2.-.-.- (Transferases)
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EC:2.7.-.- (Transferring phosphorus-containing groups)
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EC:2.7.1.- (Phosphotransferases with an alcohol group as acceptor)
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EC:2.7.1.30 (Glycerol kinase)
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We only extract the leaf level labels, here EC:2.7.1.30, corresponding to glycerol kinase.
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dataset_infos.json
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{"lightonai--SwissProt-EC-leaf": {"description": "", "citation": "", "homepage": "", "license": "", "features": {"seq": {"dtype": "string", "id": null, "_type": "Value"}, "labels": {"feature": {"dtype": "int64", "id": null, "_type": "Value"}, "length": -1, "id": null, "_type": "Sequence"}, "labels_str": {"dtype": "string", "id": null, "_type": "Value"}, "id": {"dtype": "string", "id": null, "_type": "Value"}}, "post_processed": null, "supervised_keys": null, "task_templates": null, "builder_name": "json", "config_name": "default", "version": {"version_str": "0.0.0", "description": null, "major": 0, "minor": 0, "patch": 0}, "splits": {"dev": {"name": "dev", "num_bytes": 10451839, "num_examples": 23010, "dataset_name": "SwissProt-EC-leaf"}, "test": {"name": "test", "num_bytes": 10132087, "num_examples": 22183, "dataset_name": "SwissProt-EC-leaf"}, "train": {"name": "train", "num_bytes": 81585258, "num_examples": 178302, "dataset_name": "SwissProt-EC-leaf"}}, "download_checksums": null, "download_size": 89964475, "post_processing_size": null, "dataset_size": 102169184, "size_in_bytes": 192133659}}
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data/dev-00000-of-00001.parquet → lightonai--SwissProt-EC-leaf/parquet-dev.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:
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size
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version https://git-lfs.github.com/spec/v1
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oid sha256:6da29f763c39a82f359d543805347321759613d6cdaf837eb78c62bac2649a9f
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size 8583963
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data/test-00000-of-00001.parquet → lightonai--SwissProt-EC-leaf/parquet-test.parquet
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oid sha256:269a156516a80f09b00eb25a374b66858bdd81e84d93025bb1bc1f2fb82b34dd
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size 8458939
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data/train-00000-of-00001.parquet → lightonai--SwissProt-EC-leaf/parquet-train.parquet
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oid sha256:d4bcf334d6f27cb47ffa85c3f9ef149d06b3e7e056f128c73a85de3c5cf79819
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size 68038848
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