# Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # TODO: Address all TODOs and remove all explanatory comments """TODO: Add a description here.""" import csv import json import os import datasets # TODO: Add BibTeX citation # Find for instance the citation on arxiv or on the dataset repo/website _CITATION = """\ @InProceedings{huggingface:dataset, title = {A great new dataset}, author={huggingface, Inc. }, year={2020} } """ # TODO: Add description of the dataset here # You can copy an official description _DESCRIPTION = """\ This new dataset is designed to solve this great NLP task and is crafted with a lot of care. """ # TODO: Add a link to an official homepage for the dataset here _HOMEPAGE = "" # TODO: Add the licence for the dataset here if you can find it _LICENSE = "" # TODO: Add link to the official dataset URLs here # The HuggingFace Datasets library doesn't host the datasets but only points to the original files. # This can be an arbitrary nested dict/list of URLs (see below in `_split_generators` method) _URLS = { "first_domain": "https://huggingface.co/great-new-dataset-first_domain.zip", "second_domain": "https://huggingface.co/great-new-dataset-second_domain.zip", } # TODO: Name of the dataset usually matches the script name with CamelCase instead of snake_case class NewDataset(datasets.GeneratorBasedBuilder): """TODO: Short description of my dataset.""" VERSION = datasets.Version("1.1.0") # This is an example of a dataset with multiple configurations. # If you don't want/need to define several sub-sets in your dataset, # just remove the BUILDER_CONFIG_CLASS and the BUILDER_CONFIGS attributes. # If you need to make complex sub-parts in the datasets with configurable options # You can create your own builder configuration class to store attribute, inheriting from datasets.BuilderConfig # BUILDER_CONFIG_CLASS = MyBuilderConfig # You will be able to load one or the other configurations in the following list with # data = datasets.load_dataset('my_dataset', 'first_domain') # data = datasets.load_dataset('my_dataset', 'second_domain') BUILDER_CONFIGS = [ datasets.BuilderConfig(name="first_domain", version=VERSION, description="This part of my dataset covers a first domain"), datasets.BuilderConfig(name="second_domain", version=VERSION, description="This part of my dataset covers a second domain"), ] DEFAULT_CONFIG_NAME = "first_domain" # It's not mandatory to have a default configuration. Just use one if it make sense. def _info(self): # TODO: This method specifies the datasets.DatasetInfo object which contains informations and typings for the dataset if self.config.name == "first_domain": # This is the name of the configuration selected in BUILDER_CONFIGS above features = datasets.Features( { "year": datasets.Value("int32"), "locationabbr": datasets.Value("string"), "locationdesc": datasets.Value("string"), "geolocation": datasets.Features({"latitude": datasets.Value("float32"), "longitude": datasets.Value("float32")}), "disease_type": datasets.Value("int32"), "data_value_type": datasets.Value("int32"), "data_value": datasets.Value("float32"), "break_out_category": datasets.Value("string"), "break_out_details": datasets.Value("string"), "break_out_type": datasets.Value("int32"), "life_expectancy": datasets.Value("float32") # These are the features of your dataset like images, labels ... } ) return datasets.DatasetInfo( # This is the description that will appear on the datasets page. description=_DESCRIPTION, # This defines the different columns of the dataset and their types features=features, # Here we define them above because they are different between the two configurations # If there's a common (input, target) tuple from the features, uncomment supervised_keys line below and # specify them. They'll be used if as_supervised=True in builder.as_dataset. # supervised_keys=("sentence", "label"), # Homepage of the dataset for documentation homepage=_HOMEPAGE, # License for the dataset if available license=_LICENSE, # Citation for the dataset citation=_CITATION, ) def _split_generators(self, dl_manager): # TODO: This method is tasked with downloading/extracting the data and defining the splits depending on the configuration # If several configurations are possible (listed in BUILDER_CONFIGS), the configuration selected by the user is in self.config.name # dl_manager is a datasets.download.DownloadManager that can be used to download and extract URLS # It can accept any type or nested list/dict and will give back the same structure with the url replaced with path to local files. # By default the archives will be extracted and a path to a cached folder where they are extracted is returned instead of the archive dl_paths = dl_manager.download_and_extract({ 'train_csv': 'https://drive.google.com/file/d/1eChYmZ3RMq1v-ek1u6DD2m_dGIrz3sbi/view?usp=sharing' }) return [ datasets.SplitGenerator( name=datasets.Split.TRAIN, gen_kwargs={ "csvpath": dl_paths['train_csv'], }, ), ] def _generate_examples(self, csvpath): with open(csvpath, encoding="utf-8") as f: reader = csv.DictReader(f) for key, row in enumerate(reader): yield key, { "year": int(row["Year"]), "location_abbr": row["LocationAbbr"], "location_desc": row["LocationDesc"], "geolocation": { "latitude": float(row["latitude"]), "longitude": float(row["longitude"]) }, "disease_type": int(row["Disease_Type"]), "data_value_type": int(row["Data_Value_Type"]), "data_value": float(row["Data_Value"]), "break_out_category": row["Break_Out_Category"], "break_out_details": row["Break_Out_Details"], "break_out_type": int(row["Break_Out_Type"]), "life_expectancy": float(row["Life_Expectancy"]) if row["Life_Expectancy"] else None } @staticmethod def preprocess_data(filepath): data = pd.read_csv("https://drive.google.com/file/d/1ktRNl7jg0Z83rkymD9gcsGLdVqVaFtd-/view?usp=drive_link") data = data[['YearStart', 'LocationAbbr', 'LocationDesc', 'Geolocation', 'Topic', 'Question', 'Data_Value_Type', 'Data_Value', 'Data_Value_Alt', 'Low_Confidence_Limit', 'High_Confidence_Limit', 'Break_Out_Category', 'Break_Out']] def convert_to_tuple(geo_str): if isinstance(geo_str, str): geo_str = geo_str.replace('POINT (', '').replace(')', '') lon, lat = map(float, geo_str.split()) return (lon, lat) else: return geo_str data['Geolocation'] = data['Geolocation'].apply(convert_to_tuple) disease_columns = [ 'Major cardiovascular disease mortality rate among US adults (18+); NVSS', 'Diseases of the heart (heart disease) mortality rate among US adults (18+); NVSS', 'Acute myocardial infarction (heart attack) mortality rate among US adults (18+); NVSS', 'Coronary heart disease mortality rate among US adults (18+); NVSS', 'Heart failure mortality rate among US adults (18+); NVSS', 'Cerebrovascular disease (stroke) mortality rate among US adults (18+); NVSS', 'Ischemic stroke mortality rate among US adults (18+); NVSS', 'Hemorrhagic stroke mortality rate among US adults (18+); NVSS' ] disease_column_mapping = {column_name: index for index, column_name in enumerate(disease_columns)} data['Question'] = data['Question'].apply(lambda x: disease_column_mapping.get(x, -1)) sex_columns = ['Male', 'Female'] sex_column_mapping = {column_name: index + 1 for index, column_name in enumerate(sex_columns)} age_columns = ['18-24', '25-44', '45-64', '65+'] age_column_mapping = {column_name: index + 1 for index, column_name in enumerate(age_columns)} race_columns = ['Non-Hispanic White', 'Non-Hispanic Black', 'Hispanic', 'Other'] race_column_mapping = {column_name: index + 1 for index, column_name in enumerate(race_columns)} def map_break_out_category(value): if value in sex_column_mapping: return sex_column_mapping[value] elif value in age_column_mapping: return age_column_mapping[value] elif value in race_column_mapping: return race_column_mapping[value] else: return value data['Break_Out_Type'] = data['Break_Out'].apply(map_break_out_category) data.drop(columns=['Topic', 'Low_Confidence_Limit', 'High_Confidence_Limit', 'Data_Value_Alt'], axis=1, inplace=True) data['Data_Value_Type'] = data['Data_Value_Type'].apply(lambda x: 1 if x == 'Age-Standardized' else 0) data.rename(columns={'Question':'Disease_Type', 'YearStart':'Year', 'Break_Out':'Break_Out_Details'}, inplace=True) data['Break_Out_Type'] = data['Break_Out_Type'].replace('Overall', 0) lt2000 = pd.read_csv("https://drive.google.com/file/d/1ktRNl7jg0Z83rkymD9gcsGLdVqVaFtd-/view?usp=drive_link") lt2000 = lt2000[(lt2000['race_name'] == 'Total') & (lt2000['age_name'] == '<1 year')] lt2000 = lt2000[['location_name', 'val']] lt2000.rename(columns={'val':'Life_Expectancy'}, inplace=True) lt2005 = pd.read_csv("https://drive.google.com/file/d/1xZqeOgj32-BkOhDTZVc4k_tp1ddnOEh7/view?usp=drive_link") lt2005 = lt2005[(lt2005['race_name'] == 'Total') & (lt2005['age_name'] == '<1 year')] lt2005 = lt2005[['location_name', 'val']] lt2005.rename(columns={'val':'Life_Expectancy'}, inplace=True) lt2010 = pd.read_csv("https://drive.google.com/file/d/1ItqHBuuUa38PVytfahaAV8NWwbhHMMg8/view?usp=drive_link") lt2010 = lt2010[(lt2010['race_name'] == 'Total') & (lt2010['age_name'] == '<1 year')] lt2010 = lt2010[['location_name', 'val']] lt2010.rename(columns={'val':'Life_Expectancy'}, inplace=True) lt2015 = pd.read_csv("https://drive.google.com/file/d/1rOgQY1RQiry2ionTKM_UWgT8cYD2E0vX/view?usp=drive_link") lt2015 = lt2015[(lt2015['race_name'] == 'Total') & (lt2015['age_name'] == '<1 year')] lt2015 = lt2015[['location_name', 'val']] lt2015.rename(columns={'val':'Life_Expectancy'}, inplace=True) lt_data = pd.concat([lt2000, lt2005, lt2010, lt2015]) lt_data.drop_duplicates(subset=['location_name'], inplace=True) data2 = pd.merge(data, lt_data, how='inner', left_on='LocationDesc', right_on='location_name') data2.drop(columns=['location_name'], axis=1, inplace=True) data2 = data2[(data2['Break_Out_Details'] != '75+') & (data2['Break_Out_Details'] != '35+')] data2.rename(columns={'Question':'Disease_Type'}, inplace=True) data2['Life_Expectancy'] = np.where(data2['Break_Out_Type'] == 0, data2['Life_Expectancy'], np.nan) processed_filepath = '/content/drive/MyDrive/my_processed_data.csv' return processed_filepath