Christina Theodoris
commited on
Commit
•
996d3e5
1
Parent(s):
1c2f864
Add example input labels for distinguishing bivalent promoters.
Browse files- examples/example_input_files/bivalent_promoters/bivalent_gene_labels.txt +107 -0
- examples/example_input_files/bivalent_promoters/lys4_only_gene_labels.txt +80 -0
- examples/example_input_files/bivalent_promoters/no_methylation_gene_labels.txt +42 -0
- examples/example_input_files/{dosage_sens_tf_labels.csv → dosage_sensitive_tfs/dosage_sens_tf_labels.csv} +0 -0
examples/example_input_files/bivalent_promoters/bivalent_gene_labels.txt
ADDED
@@ -0,0 +1,107 @@
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ENSG00000005073
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ENSG00000007372
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ENSG00000007372
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ENSG00000043355
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ENSG00000068120
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ENSG00000075891
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ENSG00000078399
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ENSG00000105991
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ENSG00000105996
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ENSG00000105997
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ENSG00000106004
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ENSG00000106006
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ENSG00000106031
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ENSG00000106038
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ENSG00000107807
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ENSG00000107821
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ENSG00000107831
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ENSG00000107859
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ENSG00000107862
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ENSG00000108511
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ENSG00000108786
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ENSG00000108797
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ENSG00000110693
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ENSG00000110693
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ENSG00000113430
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ENSG00000115844
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ENSG00000117707
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ENSG00000117707
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ENSG00000119915
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ENSG00000120068
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ENSG00000120075
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ENSG00000120093
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ENSG00000120093
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ENSG00000120094
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ENSG00000122592
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ENSG00000125285
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ENSG00000125798
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ENSG00000125813
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ENSG00000125813
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ENSG00000125816
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ENSG00000125820
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ENSG00000128573
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ENSG00000128645
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ENSG00000128652
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ENSG00000128709
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ENSG00000128710
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ENSG00000128713
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ENSG00000128714
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ENSG00000129514
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ENSG00000131196
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ENSG00000131196
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ENSG00000136327
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ENSG00000136944
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ENSG00000138083
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ENSG00000139800
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ENSG00000143013
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ENSG00000143632
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ENSG00000144355
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ENSG00000148680
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ENSG00000148826
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ENSG00000151615
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ENSG00000152192
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ENSG00000152977
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ENSG00000159184
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ENSG00000159387
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ENSG00000163412
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ENSG00000163421
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ENSG00000163623
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ENSG00000164330
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ENSG00000164438
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ENSG00000164690
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ENSG00000164778
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ENSG00000165588
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ENSG00000165588
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ENSG00000165588
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ENSG00000166407
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ENSG00000166407
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ENSG00000168505
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ENSG00000168875
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ENSG00000169946
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ENSG00000170166
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ENSG00000170178
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ENSG00000170549
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ENSG00000170561
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ENSG00000170577
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ENSG00000170689
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ENSG00000173917
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ENSG00000174279
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ENSG00000174963
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ENSG00000174963
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ENSG00000175879
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ENSG00000176842
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ENSG00000177508
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ENSG00000178573
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ENSG00000182568
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ENSG00000182742
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ENSG00000185551
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ENSG00000185551
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ENSG00000187140
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ENSG00000196092
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ENSG00000197576
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ENSG00000198807
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ENSG00000253293
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ENSG00000256463
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ENSG00000260027
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ENSG00000276644
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ENSG00000285708
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examples/example_input_files/bivalent_promoters/lys4_only_gene_labels.txt
ADDED
@@ -0,0 +1,80 @@
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ENSG00000012048
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ENSG00000033627
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ENSG00000037042
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ENSG00000055950
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ENSG00000067596
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ENSG00000069248
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ENSG00000072682
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ENSG00000085274
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ENSG00000088035
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ENSG00000088930
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ENSG00000095539
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ENSG00000102471
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ENSG00000102967
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ENSG00000104313
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ENSG00000105146
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ENSG00000105379
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ENSG00000105982
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ENSG00000105983
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ENSG00000107816
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ENSG00000107819
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ENSG00000107829
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ENSG00000107833
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ENSG00000108784
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ENSG00000108799
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ENSG00000108828
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ENSG00000108830
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ENSG00000109911
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ENSG00000113522
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ENSG00000119487
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ENSG00000120049
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ENSG00000125347
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ENSG00000126581
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ENSG00000131374
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ENSG00000131437
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ENSG00000131462
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ENSG00000131467
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ENSG00000131469
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ENSG00000131470
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ENSG00000131475
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ENSG00000131477
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ENSG00000135272
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ENSG00000135776
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ENSG00000135801
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ENSG00000136158
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ENSG00000140262
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ENSG00000140450
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ENSG00000140563
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ENSG00000140829
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ENSG00000140830
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ENSG00000145494
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ENSG00000146909
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ENSG00000147905
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ENSG00000148688
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ENSG00000148840
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ENSG00000148950
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ENSG00000151332
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ENSG00000151338
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ENSG00000165637
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ENSG00000165644
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ENSG00000166135
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ENSG00000166136
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ENSG00000166167
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ENSG00000166169
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ENSG00000166189
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ENSG00000166197
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ENSG00000166377
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ENSG00000167081
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ENSG00000168118
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ENSG00000171421
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ENSG00000175832
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ENSG00000186480
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ENSG00000187098
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ENSG00000188554
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ENSG00000196628
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ENSG00000196628
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ENSG00000198728
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ENSG00000198728
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ENSG00000198863
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ENSG00000285283
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ENSG00000285708
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examples/example_input_files/bivalent_promoters/no_methylation_gene_labels.txt
ADDED
@@ -0,0 +1,42 @@
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ENSG00000068079
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ENSG00000068383
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ENSG00000075290
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ENSG00000104313
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ENSG00000105370
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ENSG00000105374
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ENSG00000105383
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ENSG00000106536
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ENSG00000113520
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ENSG00000113525
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ENSG00000118557
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ENSG00000125257
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ENSG00000128573
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ENSG00000131471
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ENSG00000131480
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ENSG00000131482
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ENSG00000134532
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ENSG00000136319
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ENSG00000138792
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ENSG00000140262
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ENSG00000140718
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ENSG00000147488
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ENSG00000147488
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ENSG00000148677
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ENSG00000151322
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ENSG00000151322
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ENSG00000156113
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ENSG00000164399
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ENSG00000164400
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ENSG00000167749
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ENSG00000167754
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ENSG00000167755
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ENSG00000169035
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ENSG00000170927
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ENSG00000182177
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ENSG00000186153
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ENSG00000187098
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ENSG00000204764
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ENSG00000213022
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ENSG00000213822
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ENSG00000261701
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ENSG00000285708
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examples/example_input_files/{dosage_sens_tf_labels.csv → dosage_sensitive_tfs/dosage_sens_tf_labels.csv}
RENAMED
File without changes
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