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Parent(s):
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Update installation instructions to include git lfs install and ssh method
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README.md
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@@ -49,7 +49,8 @@ Example applications demonstrated in [our manuscript](https://rdcu.be/ddrx0) inc
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In addition to the pretrained model, contained herein are functions for tokenizing and collating data specific to single cell transcriptomics, pretraining the model, fine-tuning the model, extracting and plotting cell embeddings, and performing in silico pertrubation with either the pretrained or fine-tuned models. To install:
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```bash
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git
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cd Geneformer
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pip install .
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```
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In addition to the pretrained model, contained herein are functions for tokenizing and collating data specific to single cell transcriptomics, pretraining the model, fine-tuning the model, extracting and plotting cell embeddings, and performing in silico pertrubation with either the pretrained or fine-tuned models. To install:
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```bash
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git lfs install
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git clone [email protected]:ctheodoris/Geneformer
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cd Geneformer
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pip install .
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```
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